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Heppner DE, Dustin CM, Liao C, Hristova M, Veith C, Little AC, Ahlers BA, White SL, Deng B, Lam YW, Li J, van der Vliet A. Direct cysteine sulfenylation drives activation of the Src kinase. Nat Commun 2018; 9:4522. [PMID: 30375386 PMCID: PMC6207713 DOI: 10.1038/s41467-018-06790-1] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 09/19/2018] [Indexed: 01/17/2023] Open
Abstract
The Src kinase controls aspects of cell biology and its activity is regulated by intramolecular structural changes induced by protein interactions and tyrosine phosphorylation. Recent studies indicate that Src is additionally regulated by redox-dependent mechanisms, involving oxidative modification(s) of cysteines within the Src protein, although the nature and molecular-level impact of Src cysteine oxidation are unknown. Using a combination of biochemical and cell-based studies, we establish the critical importance of two Src cysteine residues, Cys-185 and Cys-277, as targets for H2O2-mediated sulfenylation (Cys-SOH) in redox-dependent kinase activation in response to NADPH oxidase-dependent signaling. Molecular dynamics and metadynamics simulations reveal the structural impact of sulfenylation of these cysteines, indicating that Cys-277-SOH enables solvent exposure of Tyr-416 to promote its (auto)phosphorylation, and that Cys-185-SOH destabilizes pTyr-527 binding to the SH2 domain. These redox-dependent Src activation mechanisms offer opportunities for development of Src-selective inhibitors in treatment of diseases where Src is aberrantly activated.
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Affiliation(s)
- David E Heppner
- Department of Pathology and Laboratory Medicine, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA.
- Department of Cancer Biology, Dana-Farber Cancer Institute, 450 Brookline Ave, Boston, MA, 02215, USA.
- Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave, Boston, MA, 02115, USA.
| | - Christopher M Dustin
- Department of Pathology and Laboratory Medicine, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA
| | - Chenyi Liao
- Department of Chemistry, College of Arts and Sciences, University of Vermont, 82 University Place, Burlington, VT, 05405, USA
| | - Milena Hristova
- Department of Pathology and Laboratory Medicine, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA
| | - Carmen Veith
- Department of Pathology and Laboratory Medicine, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA
| | - Andrew C Little
- Department of Pathology and Laboratory Medicine, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA
| | - Bethany A Ahlers
- Department of Biology, College of Arts and Sciences, University of Vermont, 109 Carrigan Drive, Burlington, VT, 05405, USA
| | - Sheryl L White
- Department of Neurological Sciences, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA
| | - Bin Deng
- Department of Biology, College of Arts and Sciences, University of Vermont, 109 Carrigan Drive, Burlington, VT, 05405, USA
| | - Ying-Wai Lam
- Department of Biology, College of Arts and Sciences, University of Vermont, 109 Carrigan Drive, Burlington, VT, 05405, USA
| | - Jianing Li
- Department of Chemistry, College of Arts and Sciences, University of Vermont, 82 University Place, Burlington, VT, 05405, USA.
| | - Albert van der Vliet
- Department of Pathology and Laboratory Medicine, Robert Larner, M.D. College of Medicine University of Vermont, 149 Beaumont Avenue, Burlington, VT, 05405, USA.
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Chen W, Pacheco A, Takano Y, Day JJ, Hanaoka K, Xian M. A Single Fluorescent Probe to Visualize Hydrogen Sulfide and Hydrogen Polysulfides with Different Fluorescence Signals. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201604892] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Wei Chen
- Department of Chemistry; Washington State University; Pullman WA 99164 USA
| | - Armando Pacheco
- Department of Chemistry; Washington State University; Pullman WA 99164 USA
| | - Yoko Takano
- Graduate School of Pharmaceutical Sciences; The University of Tokyo; Tokyo 113-0033 Japan
| | - Jacob J. Day
- Department of Chemistry; Washington State University; Pullman WA 99164 USA
| | - Kenjiro Hanaoka
- Graduate School of Pharmaceutical Sciences; The University of Tokyo; Tokyo 113-0033 Japan
| | - Ming Xian
- Department of Chemistry; Washington State University; Pullman WA 99164 USA
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Chen W, Pacheco A, Takano Y, Day JJ, Hanaoka K, Xian M. A Single Fluorescent Probe to Visualize Hydrogen Sulfide and Hydrogen Polysulfides with Different Fluorescence Signals. Angew Chem Int Ed Engl 2016; 55:9993-6. [PMID: 27410794 DOI: 10.1002/anie.201604892] [Citation(s) in RCA: 198] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2016] [Indexed: 11/11/2022]
Abstract
Hydrogen sulfide (H2 S) and hydrogen polysulfides (H2 Sn , n>1) are endogenous regulators of many physiological processes. In order to better understand the symbiotic relationship and cellular cross-talk between H2 S and H2 Sn , it is highly desirable to develop single fluorescent probes which enable dual-channel discrimination between H2 S and H2 Sn . Herein, we report the rational design, synthesis, and evaluation of the first dual-detection fluorescent probe DDP-1 that can visualize H2 S and H2 Sn with different fluorescence signals. The probe showed high selectivity and sensitivity to H2 S and H2 Sn in aqueous media and in cells.
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Affiliation(s)
- Wei Chen
- Department of Chemistry, Washington State University, Pullman, WA, 99164, USA
| | - Armando Pacheco
- Department of Chemistry, Washington State University, Pullman, WA, 99164, USA
| | - Yoko Takano
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan
| | - Jacob J Day
- Department of Chemistry, Washington State University, Pullman, WA, 99164, USA
| | - Kenjiro Hanaoka
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, 113-0033, Japan
| | - Ming Xian
- Department of Chemistry, Washington State University, Pullman, WA, 99164, USA.
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Chen W, Rosser EW, Matsunaga T, Pacheco A, Akaike T, Xian M. The Development of Fluorescent Probes for Visualizing Intracellular Hydrogen Polysulfides. Angew Chem Int Ed Engl 2015; 54:13961-5. [PMID: 26381762 DOI: 10.1002/anie.201506887] [Citation(s) in RCA: 131] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Indexed: 01/02/2023]
Abstract
Endogenous hydrogen polysulfides (H2Sn; n>1) have been recognized as important regulators in sulfur-related redox biology. H2Sn can activate tumor suppressors, ion channels, and transcription factors with higher potency than H2S. Although H2Sn are drawing increasing attention, their exact mechanisms of action are still poorly understood. A major hurdle in this field is the lack of reliable and convenient methods for H2Sn detection. Herein we report a H2Sn-mediated benzodithiolone formation under mild conditions. This method takes advantage of the unique dual reactivity of H2Sn as both a nucleophile and an electrophile. Based on this reaction, three fluorescent probes (PSP-1, PSP-2, and PSP-3) were synthesized and evaluated. Among the probes prepared, PSP-3 showed a desirable off/on fluorescence response to H2Sn and high specificity. The probe was successfully applied in visualizing intracellular H2Sn.
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Affiliation(s)
- Wei Chen
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
| | - Ethan W Rosser
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
| | - Tetsuro Matsunaga
- Department of Environmental Health Sciences and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai, 980-8575 (Japan)
| | - Armando Pacheco
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
| | - Takaaki Akaike
- Department of Environmental Health Sciences and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai, 980-8575 (Japan)
| | - Ming Xian
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA).
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5
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Chen W, Rosser EW, Matsunaga T, Pacheco A, Akaike T, Xian M. The Development of Fluorescent Probes for Visualizing Intracellular Hydrogen Polysulfides. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201506887] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Wei Chen
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
| | - Ethan W. Rosser
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
| | - Tetsuro Matsunaga
- Department of Environmental Health Sciences and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai, 980‐8575 (Japan)
| | - Armando Pacheco
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
| | - Takaaki Akaike
- Department of Environmental Health Sciences and Molecular Toxicology, Tohoku University Graduate School of Medicine, Sendai, 980‐8575 (Japan)
| | - Ming Xian
- Department of Chemistry, Washington State University, Pullman, WA 99164 (USA)
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Wang YT, Piyankarage SC, Williams DL, Thatcher GRJ. Proteomic profiling of nitrosative stress: protein S-oxidation accompanies S-nitrosylation. ACS Chem Biol 2014; 9:821-30. [PMID: 24397869 PMCID: PMC3985710 DOI: 10.1021/cb400547u] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
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Reversible chemical modifications
of protein cysteine residues by S-nitrosylation and S-oxidation are increasingly recognized as important regulatory
mechanisms for many protein classes associated with cellular signaling
and stress response. Both modifications may theoretically occur under
cellular nitrosative or nitroxidative stress. Therefore, a proteomic
isotope-coded approach to parallel, quantitative analysis of cysteome S-nitrosylation and S-oxidation was developed.
Modifications of cysteine residues of (i) human glutathione-S-transferase
P1-1 (GSTP1) and (ii) the schistosomiasis drug target thioredoxin
glutathione reductase (TGR) were studied. Both S-nitrosylation (SNO) and S-oxidation to disulfide
(SS) were observed for reactive cysteines, dependent on concentration
of added S-nitrosocysteine (CysNO) and independent
of oxygen. SNO and SS modifications of GSTP1 were quantified and compared
for therapeutically relevant NO and HNO donors from different chemical
classes, revealing oxidative modification for all donors. Observations
on GSTP1 were extended to cell cultures, analyzed after lysis and
in-gel digestion. Treatment of living neuronal cells with CysNO, to
induce nitrosative stress, caused levels of S-nitrosylation
and S-oxidation of GSTP1 comparable to those of cell-free
studies. Cysteine modifications of PARK7/DJ-1, peroxiredoxin-2, and
other proteins were identified, quantified, and compared to overall
levels of protein S-nitrosylation. The new methodology
has allowed identification and quantitation of specific cysteome modifications,
demonstrating that nitroxidation to protein disulfides occurs concurrently
with S-nitrosylation to protein-SNO in recombinant
proteins and living cells under nitrosative stress.
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Affiliation(s)
- Yue-Ting Wang
- Department of Medicinal Chemistry and Pharmacognosy, University of Illinois College of Pharmacy, University of Illinois at Chicago, 833 S. Wood Street, Chicago, Illinois 60612-7231, United States
| | - Sujeewa C. Piyankarage
- Department of Medicinal Chemistry and Pharmacognosy, University of Illinois College of Pharmacy, University of Illinois at Chicago, 833 S. Wood Street, Chicago, Illinois 60612-7231, United States
| | - David L. Williams
- Department of Immunology-Microbiology, Rush University Medical Center, 1653 W. Congress Parkway, Chicago, Illinois 60612, United States
| | - Gregory R. J. Thatcher
- Department of Medicinal Chemistry and Pharmacognosy, University of Illinois College of Pharmacy, University of Illinois at Chicago, 833 S. Wood Street, Chicago, Illinois 60612-7231, United States
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Jacob C, Ba LA. Open Season for Hunting and Trapping Post-translational Cysteine Modifications in Proteins and Enzymes. Chembiochem 2011; 12:841-4. [DOI: 10.1002/cbic.201100068] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2011] [Indexed: 11/06/2022]
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