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Solomon JB, Tanifuji K, Lee CC, Jasniewski AJ, Hedman B, Hodgson KO, Hu Y, Ribbe MW. Characterization of a Nitrogenase Iron Protein Substituted with a Synthetic [Fe 4 Se 4 ] Cluster. Angew Chem Int Ed Engl 2022; 61:e202202271. [PMID: 35218104 PMCID: PMC9038695 DOI: 10.1002/anie.202202271] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Indexed: 11/08/2022]
Abstract
The Fe protein of nitrogenase plays multiple roles in substrate reduction and cluster maturation via its redox-active [Fe4 S4 ] cluster. Here we report the synthesis and characterization of a water-soluble [Fe4 Se4 ] cluster that is used to substitute the [Fe4 S4 ] cluster of the Azotobacter vinelandii Fe protein (AvNifH). Biochemical, EPR and XAS/EXAFS analyses demonstrate the ability of the [Fe4 Se4 ] cluster to adopt the super-reduced, all-ferrous state upon its incorporation into AvNifH. Moreover, these studies reveal that the [Fe4 Se4 ] cluster in AvNifH already assumes a partial all-ferrous state ([Fe4 Se4 ]0 ) in the presence of dithionite, where its [Fe4 S4 ] counterpart in AvNifH exists solely in the reduced state ([Fe4 S4 ]1+ ). Such a discrepancy in the redox properties of the AvNifH-associated [Fe4 Se4 ] and [Fe4 S4 ] clusters can be used to distinguish the differential redox requirements for the substrate reduction and cluster maturation of nitrogenase, pointing to the utility of chalcogen-substituted FeS clusters in future mechanistic studies of nitrogenase catalysis and assembly.
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Affiliation(s)
- Joseph B Solomon
- Department of Molecular Biology and Biochemistry, University of Califronia, Irvine, Irvine, CA 92697-3900, USA
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697-2025, USA
| | - Kazuki Tanifuji
- Department of Molecular Biology and Biochemistry, University of Califronia, Irvine, Irvine, CA 92697-3900, USA
- Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto, 611-0011, Japan
| | - Chi Chung Lee
- Department of Molecular Biology and Biochemistry, University of Califronia, Irvine, Irvine, CA 92697-3900, USA
| | - Andrew J Jasniewski
- Department of Molecular Biology and Biochemistry, University of Califronia, Irvine, Irvine, CA 92697-3900, USA
| | - Britt Hedman
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
| | - Keith O Hodgson
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94025, USA
- Department of Chemistry, Stanford University, Stanford, CA 94305, USA
| | - Yilin Hu
- Department of Molecular Biology and Biochemistry, University of Califronia, Irvine, Irvine, CA 92697-3900, USA
| | - Markus W Ribbe
- Department of Molecular Biology and Biochemistry, University of Califronia, Irvine, Irvine, CA 92697-3900, USA
- Department of Chemistry, University of California, Irvine, Irvine, CA 92697-2025, USA
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Oehlmann NN, Rebelein JG. The Conversion of Carbon Monoxide and Carbon Dioxide by Nitrogenases. Chembiochem 2022; 23:e202100453. [PMID: 34643977 PMCID: PMC9298215 DOI: 10.1002/cbic.202100453] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 10/13/2021] [Indexed: 12/02/2022]
Abstract
Nitrogenases are the only known family of enzymes that catalyze the reduction of molecular nitrogen (N2 ) to ammonia (NH3 ). The N2 reduction drives biological nitrogen fixation and the global nitrogen cycle. Besides the conversion of N2 , nitrogenases catalyze a whole range of other reductions, including the reduction of the small gaseous substrates carbon monoxide (CO) and carbon dioxide (CO2 ) to hydrocarbons. However, it remains an open question whether these 'side reactivities' play a role under environmental conditions. Nonetheless, these reactivities and particularly the formation of hydrocarbons have spurred the interest in nitrogenases for biotechnological applications. There are three different isozymes of nitrogenase: the molybdenum and the alternative vanadium and iron-only nitrogenase. The isozymes differ in their metal content, structure, and substrate-dependent activity, despite their homology. This minireview focuses on the conversion of CO and CO2 to methane and higher hydrocarbons and aims to specify the differences in activity between the three nitrogenase isozymes.
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Affiliation(s)
- Niels N. Oehlmann
- Max Planck Institute for Terrestrial MicrobiologyKarl-von-Frisch-Straße 1035043MarburgGermany
| | - Johannes G. Rebelein
- Max Planck Institute for Terrestrial MicrobiologyKarl-von-Frisch-Straße 1035043MarburgGermany
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Solomon J, Tanifuji K, Lee CC, Jasniewski A, Hedman B, Hodgson K, Hu Y, Ribbe M. Characterization of a Nitrogenase Iron Protein Substituted with a Synthetic [Fe4Se4] Cluster. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202202271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Kazuki Tanifuji
- Kyoto University Institute for Chemical Research UNITED STATES
| | - Chi Chung Lee
- University of California Irvine Molecular Biology and Biochemistry UNITED STATES
| | - Andrew Jasniewski
- University of California Irvine Molecular Biology and Biochemistry UNITED STATES
| | - Britt Hedman
- Stanford University Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory UNITED STATES
| | | | - Yilin Hu
- University of California Irvine Molecular Biology and Biochemistry UNITED STATES
| | - Markus Ribbe
- Irvine Molecular Biology & Biochemistry 2236 McGaugh Hall 92697 Irvine UNITED STATES
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Newcomb MP, Lee CC, Tanifuji K, Jasniewski AJ, Liedtke J, Ribbe MW, Hu Y. A V‐Nitrogenase Variant Containing a Citrate‐Substituted Cofactor. Chembiochem 2019; 21:1742-1748. [DOI: 10.1002/cbic.201900654] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Indexed: 11/12/2022]
Affiliation(s)
- Megan P. Newcomb
- Department of Chemistry University of California, Irvine Natural Sciences II Irvine CA 92697-2025 USA
| | - Chi Chung Lee
- Department of Molecular Biology and Biochemistry University of California, Irvine 3205 McGaugh Hall Irvine CA 92697-3900 USA
| | - Kazuki Tanifuji
- Department of Molecular Biology and Biochemistry University of California, Irvine 3205 McGaugh Hall Irvine CA 92697-3900 USA
| | - Andrew J. Jasniewski
- Department of Molecular Biology and Biochemistry University of California, Irvine 3205 McGaugh Hall Irvine CA 92697-3900 USA
| | - Jasper Liedtke
- Department of Molecular Biology and Biochemistry University of California, Irvine 3205 McGaugh Hall Irvine CA 92697-3900 USA
| | - Markus W. Ribbe
- Department of Chemistry University of California, Irvine Natural Sciences II Irvine CA 92697-2025 USA
- Department of Molecular Biology and Biochemistry University of California, Irvine 3205 McGaugh Hall Irvine CA 92697-3900 USA
| | - Yilin Hu
- Department of Molecular Biology and Biochemistry University of California, Irvine 3205 McGaugh Hall Irvine CA 92697-3900 USA
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Lee CC, Tanifuji K, Newcomb M, Liedtke J, Hu Y, Ribbe MW. A Comparative Analysis of the CO-Reducing Activities of MoFe Proteins Containing Mo- and V-Nitrogenase Cofactors. Chembiochem 2018; 19:649-653. [PMID: 29363247 DOI: 10.1002/cbic.201800035] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Indexed: 11/12/2022]
Abstract
The Mo and V nitrogenases are structurally homologous yet catalytically distinct in their abilities to reduce CO to hydrocarbons. Here we report a comparative analysis of the CO-reducing activities of the Mo- and V-nitrogenase cofactors (i.e., the M and V clusters) upon insertion of the respective cofactor into the same, cofactor-deficient MoFe protein scaffold. Our data reveal a combined contribution from the protein environment and cofactor properties to the reactivity of nitrogenase toward CO, thus laying a foundation for further mechanistic investigation of the enzymatic CO reduction, while suggesting the potential of targeting both the protein scaffold and the cofactor species for nitrogenase-based applications in the future.
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Affiliation(s)
- Chi Chung Lee
- Department of Molecular Biology and Biochemistry, University of California, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA
| | - Kazuki Tanifuji
- Department of Molecular Biology and Biochemistry, University of California, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA
| | - Megan Newcomb
- Department of Molecular Biology and Biochemistry, University of California, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA.,Department of Chemistry, University of California, 2236 McGaugh Hall, Irvine, CA, 92697-2025, USA
| | - Jasper Liedtke
- Department of Molecular Biology and Biochemistry, University of California, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA
| | - Yilin Hu
- Department of Molecular Biology and Biochemistry, University of California, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA
| | - Markus W Ribbe
- Department of Molecular Biology and Biochemistry, University of California, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA.,Department of Chemistry, University of California, 2236 McGaugh Hall, Irvine, CA, 92697-2025, USA
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Sickerman NS, Hu Y, Ribbe MW. Activation of CO
2
by Vanadium Nitrogenase. Chem Asian J 2017; 12:1985-1996. [DOI: 10.1002/asia.201700624] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Nathaniel S. Sickerman
- Department of Molecular Biology and Biochemistry University of California, Irvine Irvine CA 92697-3900 USA
| | - Yilin Hu
- Department of Molecular Biology and Biochemistry University of California, Irvine Irvine CA 92697-3900 USA
| | - Markus W. Ribbe
- Department of Molecular Biology and Biochemistry University of California, Irvine Irvine CA 92697-3900 USA
- Department of Chemistry University of California, Irvine Irvine CA 92697-2025 USA
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Rebelein JG, Hu Y, Ribbe MW. Widening the Product Profile of Carbon Dioxide Reduction by Vanadium Nitrogenase. Chembiochem 2015; 16:1993-6. [PMID: 26266490 DOI: 10.1002/cbic.201500305] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Indexed: 11/12/2022]
Abstract
Two reaction systems based on vanadium nitrogenase were previously shown to reduce CO2 to hydrocarbons: 1) an enzyme-based system that used both components of V nitrogenase for ATP-dependent reduction of CO2 to ≤C2 hydrocarbons; and 2) a cofactor-based system that employed SmI2 to supply electrons to the isolated V cluster for an ATP-independent reduction of CO2 to ≤C3 hydrocarbons. Here, we report ATP-independent reduction of CO2 to hydrocarbons by a reaction system comprising Eu(II) DTPA and the VFe protein of V nitrogenase. Combining features of both enzyme- and cofactor-based systems, this system exhibits improved C-C coupling and a broader product profile of ≤C4 hydrocarbons. The C-C coupling does not employ CO2 -derived CO, and it is significantly enhanced in D2 O. These observations afford initial insights into the characteristics of this unique reaction and provide a potential template for future design of catalysts to recycle the greenhouse gas CO2 into useful products.
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Affiliation(s)
- Johannes G Rebelein
- Department of Molecular Biology and Biochemistry, University of California in Irvine, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA
| | - Yilin Hu
- Department of Molecular Biology and Biochemistry, University of California in Irvine, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA.
| | - Markus W Ribbe
- Department of Molecular Biology and Biochemistry, University of California in Irvine, 2230/2236 McGaugh Hall, Irvine, CA, 92697-3900, USA. .,Department of Chemistry, University of California in Irvine, 2236 McGaugh Hall, Irvine, CA, 92697-2025, USA.
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Gerlach DL, Lehnert N. Fischer-Tropsch chemistry at room temperature? Angew Chem Int Ed Engl 2011; 50:7984-6. [PMID: 21761528 DOI: 10.1002/anie.201102979] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2011] [Indexed: 11/06/2022]
Abstract
The unique catalytic activity of vanadium nitrogenase suggests a new direction for the direct production of biofuels from CO with either synthetic catalysts or nitrogenase-containing bacteria. The reduction of CO by V nitrogenase to light hydrocarbons shows striking similarities to the established Fischer-Tropsch process; however, the enzyme does not use H(2) directly for this reaction. ADP=adenosine diphosphate, ATP= adenosine triphosphate.
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Affiliation(s)
- Deidra L Gerlach
- Department of Chemistry, University of Michigan, Ann Arbor, 48109, USA
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