1
|
Opdam LV, Goetzfried SK, Polanco E, Bonnet S, Pandit A. Design and characterization of porphyrin-based photosensitizing metalloproteins integrated with artificial metalloenzymes for photocatalytic hydrogen production. J Inorg Biochem 2025; 267:112855. [PMID: 39986136 DOI: 10.1016/j.jinorgbio.2025.112855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Revised: 01/28/2025] [Accepted: 02/11/2025] [Indexed: 02/24/2025]
Abstract
Hydrogen is regarded as a promising alternative to fossil fuels. A desirable method of its generation is via photocatalysis, combining photosensitizers and hydrogen-evolution catalysts in the presence of an electron donor. Inspired by natural photosynthesis, we designed photosensitizing artificial metalloproteins (ArMs) and integrated them with ArM-based catalysts for photocatalytic hydrogen production from water. Metal porphyrins based on protoporphyrin IX (PPIX) were employed as they are naturally abundant and are effective both as photosensitizers and hydrogen-evolution catalysts. Photosensitizing proteins were created by binding zinc (Zn)PPIX or ruthenium (Ru)PPIX to the haem acquisition system A from Pseudomonas aeruginosa (HasAp). The photosensitizer ArMs were combined with cobalt (Co)PPIX-myoglobin (Mb) or free CoPPIX as hydrogen evolution catalysts. We found that free CoPPIX could replace ZnPPIX or RuPPIX in HasAp, forming CoPPIX-HasAp or RuPPIX-CoPPIX-HasAp complexes with enhanced stability compared to CoPPIX-Mb. Photocatalytic hydrogen production was achieved upon irradiation at 435 nm (ZnPPIX) or 385 nm (RuPPIX), using methyl viologen as an electron carrier and triethanolamine as an electron donor. The ZnPPIX-HasAp/CoPPIX-HasAp system remained intact and active for approximately 42 h, while Ru-based systems that were excited by UV light, exhibited signs of protein cleavage upon prolonged irradiation. These results demonstrate the potential of integrating porphyrin-based ArMs for photosensitization and hydrogen evolution, with HasAp providing a robust scaffold for sustained photocatalytic activity.
Collapse
Affiliation(s)
- L V Opdam
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden, the Netherlands; Bioénergétique et Ingénierie des Protéines, 13402 Marseille, France
| | - S K Goetzfried
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden, the Netherlands; Stratingh Institute for Chemistry, University of Groningen, 9747 AG Groningen, The Netherlands
| | - E Polanco
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden, the Netherlands
| | - S Bonnet
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden, the Netherlands
| | - A Pandit
- Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2300 RA Leiden, the Netherlands.
| |
Collapse
|
2
|
Opdam LV, Polanco EA, de Regt B, Lambertina N, Bakker C, Bonnet S, Pandit A. A screening method for binding synthetic metallo-complexes to haem proteins. Anal Biochem 2022; 653:114788. [PMID: 35732212 DOI: 10.1016/j.ab.2022.114788] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 06/08/2022] [Accepted: 06/11/2022] [Indexed: 11/17/2022]
Abstract
The introduction of a second coordination sphere, in the form of a protein scaffold, to synthetic catalysts can be beneficial for their reactivity and substrate selectivity. Here we present semi-native polyacrylamide gel electrophoresis (semi-native PAGE) as a rapid screening method for studying metal complex-protein interactions. Such a screening is generally performed using electron spray ionization mass spectrometry (ESI-MS) and/or UV-Vis spectroscopy. Semi-native PAGE analysis has the advantage that it does not rely on spectral changes of the metal complex upon protein interaction and can be applied for high-throughput screening and optimization of complex binding. In semi-native PAGE non-denatured protein samples are loaded on a gel containing sodium dodecyl sulphate (SDS), leading to separation based on differences in structural stability. Semi-native PAGE gel runs of catalyst-protein mixtures were compared to gel runs obtained with native and denaturing PAGE. ESI-MS was additionally realised to confirm protein-complex binding. The general applicability of semi-native PAGE was investigated by screening the binding of various cobalt- and ruthenium-based compounds to three types of haem proteins.
Collapse
Affiliation(s)
- Laura V Opdam
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Ehider A Polanco
- MCBIM Departments, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Boyd de Regt
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | | | - Cas Bakker
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Sylvestre Bonnet
- MCBIM Departments, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden, the Netherlands
| | - Anjali Pandit
- SSNMR/BPOC, Einsteinweg 55, 2333 CC, Leiden, the Netherlands.
| |
Collapse
|
3
|
Takiguchi A, Sakakibara E, Sugimoto H, Shoji O, Shinokubo H. A Heme‐Acquisition Protein Reconstructed with a Cobalt 5‐Oxaporphyrinium Cation and Its Growth‐Inhibition Activity Toward Multidrug‐Resistant
Pseudomonas aeruginosa. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202112456] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Asahi Takiguchi
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-cho, Chikusa-ku Nagoya 464-8603 Japan
| | - Erika Sakakibara
- Department of Chemistry Graduate School of Science Nagoya University Furo-cho, Chikusa-ku Nagoya 464-8602 Japan
| | | | - Osami Shoji
- Department of Chemistry Graduate School of Science Nagoya University Furo-cho, Chikusa-ku Nagoya 464-8602 Japan
| | - Hiroshi Shinokubo
- Department of Molecular and Macromolecular Chemistry Graduate School of Engineering Nagoya University Furo-cho, Chikusa-ku Nagoya 464-8603 Japan
| |
Collapse
|
4
|
Takiguchi A, Sakakibara E, Sugimoto H, Shoji O, Shinokubo H. A Heme-Acquisition Protein Reconstructed with a Cobalt 5-Oxaporphyrinium Cation and Its Growth-Inhibition Activity Toward Multidrug-Resistant Pseudomonas aeruginosa. Angew Chem Int Ed Engl 2021; 61:e202112456. [PMID: 34913238 DOI: 10.1002/anie.202112456] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Indexed: 11/05/2022]
Abstract
Using artificial hemes for the reconstruction of natural heme proteins represents a fascinating approach to enhance the bioactivity of the latter. Here, we report the synthesis of various metal 5-oxaporphyrinium cations as cofactors, and a cobalt 5-oxaporphyrinium cation was successfully incorporated into the heme-acquisition protein (HasA) secreted by Pseudomonas aeruginosa. We hypothesize that the oxaporphyrinium cation strongly bound to the HasA-specific outer membrane receptor (HasR) due to its cationic charge, which prevents the subsequent acquisition of heme. In fact, the reconstructed HasA inhibited the growth of Pseudomonas aeruginosa and even of multidrug-resistant P. aeruginosa.
Collapse
Affiliation(s)
- Asahi Takiguchi
- Nagoya University Graduate School of Engineering School of Engineering: Nagoya Daigaku Kogakubu Daigakuin Kogaku Kenkyuka, Department of Molecular and Macromolecular Chemistry, 464-8603, Nagoya, JAPAN
| | - Erika Sakakibara
- Nagoya University School of Science Graduate School of Science: Nagoya Daigaku Rigakubu Daigakuin Rigaku Kenkyuka, Department of Chemistry, 464-8602, Nagoya, JAPAN
| | | | - Osami Shoji
- Nagoya University School of Science Graduate School of Science: Nagoya Daigaku Rigakubu Daigakuin Rigaku Kenkyuka, Department of Chemistry, 464-8602, Nagoya, JAPAN
| | - Hiroshi Shinokubo
- Graduate School of Engineering, Nagoya University, Department of Molecular and Macromolecular Chemistry, Furo-cho, Chikusa-ku, 464-8603, Nagoya, JAPAN
| |
Collapse
|
5
|
Uehara H, Shisaka Y, Nishimura T, Sugimoto H, Shiro Y, Miyake Y, Shinokubo H, Watanabe Y, Shoji O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201707212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Hiromu Uehara
- Department of Chemistry; Graduate School of Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
| | - Yuma Shisaka
- Department of Chemistry; Graduate School of Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
| | - Tsubasa Nishimura
- Department of Molecular and Macromolecular Chemistry; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Hiroshi Sugimoto
- Core Research for Evolutional Science and Technology; Japan Science and Technology Agency; 5 Sanbancho Chiyoda-ku Tokyo 102-0075 Japan
- RIKEN SPring-8 Center; 1-1-1 Kouto Sayo Hyogo 679-5148 Japan
| | - Yoshitsugu Shiro
- Guraduate School of Life Science; University of Hyogo; 3-2-1 Kouto Sayo Hyogo 678-1297 Japan
| | - Yoshihiro Miyake
- Department of Molecular and Macromolecular Chemistry; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Hiroshi Shinokubo
- Department of Molecular and Macromolecular Chemistry; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Yoshihito Watanabe
- Research Center for Materials Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
| | - Osami Shoji
- Department of Chemistry; Graduate School of Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
- Core Research for Evolutional Science and Technology; Japan Science and Technology Agency; 5 Sanbancho Chiyoda-ku Tokyo 102-0075 Japan
| |
Collapse
|
6
|
Bilitewski U, Blodgett JAV, Duhme-Klair AK, Dallavalle S, Laschat S, Routledge A, Schobert R. Chemical and Biological Aspects of Nutritional Immunity-Perspectives for New Anti-Infectives that Target Iron Uptake Systems. Angew Chem Int Ed Engl 2017; 56:14360-14382. [PMID: 28439959 DOI: 10.1002/anie.201701586] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Indexed: 12/22/2022]
Abstract
Upon bacterial infection, one of the defense mechanisms of the host is the withdrawal of essential metal ions, in particular iron, which leads to "nutritional immunity". However, bacteria have evolved strategies to overcome iron starvation, for example, by stealing iron from the host or other bacteria through specific iron chelators with high binding affinity. Fortunately, these complex interactions between the host and pathogen that lead to metal homeostasis provide several opportunities for interception and, thus, allow the development of novel antibacterial compounds. This Review focuses on iron, discusses recent highlights, and gives some future perspectives which are relevant in the fight against antibiotic resistance.
Collapse
Affiliation(s)
- Ursula Bilitewski
- AG Compound Profiling and Screening, Helmholtz Zentrum für Infektionsforschung, Inhoffenstrasse 7, 38124, Braunschweig, Germany
| | - Joshua A V Blodgett
- Department of Biology, Washington University, St. Louis, MO, 63130-4899, USA
| | | | - Sabrina Dallavalle
- Department of Food, Environmental and Nutritional Sciences, Università degli Studi di Milano, I-20133, Milano, Italy
| | - Sabine Laschat
- Institut für Organische Chemie, Universität Stuttgart, Pfaffenwaldring 55, 7, 0569, Stuttgart, Germany
| | - Anne Routledge
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK
| | - Rainer Schobert
- Organische Chemie I, Universität Bayreuth, Universitätsstrasse 30, 95447, Bayreuth, Germany
| |
Collapse
|
7
|
Bilitewski U, Blodgett JAV, Duhme-Klair AK, Dallavalle S, Laschat S, Routledge A, Schobert R. Chemische und biologische Aspekte von “Nutritional Immunity” - Perspektiven für neue Antiinfektiva mit Fokus auf bakterielle Eisenaufnahmesysteme. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201701586] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Ursula Bilitewski
- AG Compound Profiling and Screening; Helmholtz-Zentrum für Infektionsforschung; Inhoffenstraße 7 38124 Braunschweig Deutschland
| | | | | | - Sabrina Dallavalle
- Department of Food, Environmental and Nutritional Sciences; Università degli Studi di Milano; I-20133 Milano Italien
| | - Sabine Laschat
- Institut für Organische Chemie; Universität Stuttgart; Pfaffenwaldring 55, 7 0569 Stuttgart Deutschland
| | - Anne Routledge
- Department of Chemistry; University of York, Heslington; York YO10 5DD Großbritannien
| | - Rainer Schobert
- Organische Chemie I; Universität Bayreuth; Universitätsstraße 30 95447 Bayreuth Deutschland
| |
Collapse
|
8
|
Uehara H, Shisaka Y, Nishimura T, Sugimoto H, Shiro Y, Miyake Y, Shinokubo H, Watanabe Y, Shoji O. Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group. Angew Chem Int Ed Engl 2017; 56:15279-15283. [DOI: 10.1002/anie.201707212] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2017] [Indexed: 11/07/2022]
Affiliation(s)
- Hiromu Uehara
- Department of Chemistry; Graduate School of Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
| | - Yuma Shisaka
- Department of Chemistry; Graduate School of Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
| | - Tsubasa Nishimura
- Department of Molecular and Macromolecular Chemistry; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Hiroshi Sugimoto
- Core Research for Evolutional Science and Technology; Japan Science and Technology Agency; 5 Sanbancho Chiyoda-ku Tokyo 102-0075 Japan
- RIKEN SPring-8 Center; 1-1-1 Kouto Sayo Hyogo 679-5148 Japan
| | - Yoshitsugu Shiro
- Guraduate School of Life Science; University of Hyogo; 3-2-1 Kouto Sayo Hyogo 678-1297 Japan
| | - Yoshihiro Miyake
- Department of Molecular and Macromolecular Chemistry; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Hiroshi Shinokubo
- Department of Molecular and Macromolecular Chemistry; Graduate School of Engineering; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Yoshihito Watanabe
- Research Center for Materials Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
| | - Osami Shoji
- Department of Chemistry; Graduate School of Science; Nagoya University; Furo-cho Chikusa-ku Nagoya 464-8602 Japan
- Core Research for Evolutional Science and Technology; Japan Science and Technology Agency; 5 Sanbancho Chiyoda-ku Tokyo 102-0075 Japan
| |
Collapse
|