1
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Elvers BJ, Fischer C, Schulzke C. Dynamics and Coordination of a P 2N 2 Ligand - from Twisted Conformation to Chelation. Chemistry 2024; 30:e202304103. [PMID: 38372510 DOI: 10.1002/chem.202304103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 02/10/2024] [Accepted: 02/19/2024] [Indexed: 02/20/2024]
Abstract
Based on their general spacial flexibility, their Lewis and Brønsted basicity, and ability to mimic second sphere effects the 1,5-diaza-3,7-diphosphacyclooctane ligand family and their complexes have regained substantial scientific interest. It was now possible to structurally analyze a recently reported member of this family with p-tolyl and t-butyl substituents on P and N, respectively, (P2 p-tolN2 tBu). Notably, the ligand crystallizes with a 'twisted' backbone. This compound is the very first of its kind to have been unambiguously characterized with regard to its chemical and molecular structure as being in this conformation. A temperature-dependent NMR study provides insight into the molecular dynamics of two isomers in solution, which are most likely also both twisted, as judged by the observed limited reactivity. Despite the in principle unfavorable conformation of the free ligand, it was successfully chelated to tungsten and molybdenum centers in mononuclear carbonyl complexes. The ligand, a derivative thereof and four new complexes were comprehensively characterized and analyzed in comparison. This includes single crystal XRD molecular structures of P2 p-tolN2 tBu and all four complexes. P2 p-tolN2 tBu, regardless of its twisted conformation, is able to coordinate to metal centers given that enough energy (heat) for a conformational change is provided.
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Affiliation(s)
- Benedict J Elvers
- Bioinorganic Chemistry, Institute of Biochemistry, University of Greifswald, 17489, Greifswald, Germany
| | - Christian Fischer
- Bioinorganic Chemistry, Institute of Biochemistry, University of Greifswald, 17489, Greifswald, Germany
| | - Carola Schulzke
- Bioinorganic Chemistry, Institute of Biochemistry, University of Greifswald, 17489, Greifswald, Germany
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2
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Karasik AA, Heinicke JW, Balueva AS, Thede G, Jones PG, Sinyashin OG. Pt‐ and Pd‐Complexes with Acyclic and Heterocyclic
P
‐Hydroxyaryl‐Substituted
N
‐Phosphanylmethyl Amino Acids RP(CH
2
NHR')
2
and (RPCH
2
NR'CH
2
)
2
– Evaluation of (P
^
O)M Chelate Formation. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000551] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Andrey A. Karasik
- A.E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Science Arbuzov Str. 8 420088 Kazan Russia
| | - Joachim W. Heinicke
- Institut für Biochemie Universität Greifswald Felix‐Hausdorff‐Str. 4 17487 Greifswald Germany
| | - Anna S. Balueva
- A.E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Science Arbuzov Str. 8 420088 Kazan Russia
| | - Gabriele Thede
- Institut für Biochemie Universität Greifswald Felix‐Hausdorff‐Str. 4 17487 Greifswald Germany
| | - Peter G. Jones
- Institut für Anorganische und Analytische Chemie Technische Universität Braunschweig Hagenring 30 38106 Braunschweig Germany
| | - Oleg G. Sinyashin
- A.E. Arbuzov Institute of Organic and Physical Chemistry of Kazan Scientific Center of Russian Academy of Science Arbuzov Str. 8 420088 Kazan Russia
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3
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Prasad P, Selvan D, Chakraborty S. Biosynthetic Approaches towards the Design of Artificial Hydrogen-Evolution Catalysts. Chemistry 2020; 26:12494-12509. [PMID: 32449989 DOI: 10.1002/chem.202001338] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Indexed: 11/07/2022]
Abstract
Hydrogen is a clean and sustainable form of fuel that can minimize our heavy dependence on fossil fuels as the primary energy source. The need of finding greener ways to generate H2 gas has ignited interest in the research community to synthesize catalysts that can produce H2 by the reduction of H+ . The natural H2 producing enzymes hydrogenases have served as an inspiration to produce catalytic metal centers akin to these native enzymes. In this article we describe recent advances in the design of a unique class of artificial hydrogen evolving catalysts that combine the features of the active site metal(s) surrounded by a polypeptide component. The examples of these biosynthetic catalysts discussed here include i) assemblies of synthetic cofactors with native proteins; ii) peptide-appended synthetic complexes; iii) substitution of native cofactors with non-native cofactors; iv) metal substitution from rubredoxin; and v) a reengineered Cu storage protein into a Ni binding protein. Aspects of key design considerations in the construction of these artificial biocatalysts and insights gained into their chemical reactivity are discussed.
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Affiliation(s)
- Pallavi Prasad
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS, 38677, USA
| | - Dhanashree Selvan
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS, 38677, USA
| | - Saumen Chakraborty
- Department of Chemistry and Biochemistry, University of Mississippi, University, MS, 38677, USA
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4
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Affiliation(s)
- Normen Peulecke
- Leibniz Institute for Catalysis at the University of Rostock 18059 Rostock Germany
| | - Dmitry G. Yakhvarov
- Arbuzov Institute of Organic and Physical Chemistry of FRC Kazan Scientific Center of RAS Russia
| | - Joachim W. Heinicke
- Institut für Biochemie Universität Greifswald Felix‐Hausdorff‐Str. 4 17487 Greifswald Germany
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5
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Chambers GM, Wiedner ES, Bullock RM. H
2
Oxidation Electrocatalysis Enabled by Metal‐to‐Metal Hydrogen Atom Transfer: A Homolytic Approach to a Heterolytic Reaction. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201807510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Geoffrey M. Chambers
- Center for Molecular Electrocatalysis Pacific Northwest National Laboratory Richland WA 99352 USA
| | - Eric S. Wiedner
- Center for Molecular Electrocatalysis Pacific Northwest National Laboratory Richland WA 99352 USA
| | - R. Morris Bullock
- Center for Molecular Electrocatalysis Pacific Northwest National Laboratory Richland WA 99352 USA
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6
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Chambers GM, Wiedner ES, Bullock RM. H
2
Oxidation Electrocatalysis Enabled by Metal‐to‐Metal Hydrogen Atom Transfer: A Homolytic Approach to a Heterolytic Reaction. Angew Chem Int Ed Engl 2018; 57:13523-13527. [DOI: 10.1002/anie.201807510] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Indexed: 02/03/2023]
Affiliation(s)
- Geoffrey M. Chambers
- Center for Molecular Electrocatalysis Pacific Northwest National Laboratory Richland WA 99352 USA
| | - Eric S. Wiedner
- Center for Molecular Electrocatalysis Pacific Northwest National Laboratory Richland WA 99352 USA
| | - R. Morris Bullock
- Center for Molecular Electrocatalysis Pacific Northwest National Laboratory Richland WA 99352 USA
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7
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Schnidrig S, Bachmann C, Müller P, Weder N, Spingler B, Joliat-Wick E, Mosberger M, Windisch J, Alberto R, Probst B. Structure-Activity and Stability Relationships for Cobalt Polypyridyl-Based Hydrogen-Evolving Catalysts in Water. CHEMSUSCHEM 2017; 10:4570-4580. [PMID: 29052339 DOI: 10.1002/cssc.201701511] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Revised: 10/14/2017] [Indexed: 06/07/2023]
Abstract
A series of eight new and three known cobalt polypyridyl-based hydrogen-evolving catalysts (HECs) with distinct electronic and structural differences are benchmarked in photocatalytic runs in water. Methylene-bridged bis-bipyridyl is the preferred scaffold, both in terms of stability and rate. For a cobalt complex of the tetradentate methanol-bridged bispyridyl-bipyridyl complex [CoII Br(tpy)]Br, a detailed mechanistic picture is obtained by combining electrochemistry, spectroscopy, and photocatalysis. In the acidic branch, a proton-coupled electron transfer, assigned to formation of CoIII -H, is found upon reduction of CoII , in line with a pKa (CoIII -H) of approximately 7.25. Subsequent reduction (-0.94 V vs. NHE) and protonation close the catalytic cycle. Methoxy substitution on the bipyridyl scaffold results in the expected cathodic shift of the reduction, but fails to change the pKa (CoIII -H). An analysis of the outcome of the benchmarking in view of this postulated mechanism is given along with an outlook for design criteria for new generations of catalysts.
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Affiliation(s)
- Stephan Schnidrig
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Cyril Bachmann
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Peter Müller
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Nicola Weder
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Bernhard Spingler
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Evelyne Joliat-Wick
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Mathias Mosberger
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Johannes Windisch
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Roger Alberto
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
| | - Benjamin Probst
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, Switzerland
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8
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Yuki M, Sakata K, Kikuchi S, Kawai H, Takahashi T, Ando M, Nakajima K, Nishibayashi Y. Catalytic Activity of Thiolate-Bridged Diruthenium Complexes Bearing Pendent Ether Moieties in the Oxidation of Molecular Dihydrogen. Chemistry 2017; 23:1007-1012. [PMID: 27779798 DOI: 10.1002/chem.201604974] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Indexed: 11/06/2022]
Abstract
Thiolate-bridged diruthenium complexes bearing pendent ethers have been found to work as effective catalysts toward the oxidation of molecular dihydrogen into protons and electrons in water. The pendent ether moiety in the complex plays an important role to facilitate the proton transfer between the metal center and the external proton acceptor.
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Affiliation(s)
- Masahiro Yuki
- Department of Systems Innovation, School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Ken Sakata
- Faculty of Pharmaceutical Sciences, Hoshi University, Ebara, Shinagawa-ku, Tokyo, 142-8501, Japan
| | - Shoma Kikuchi
- Faculty of Pharmaceutical Sciences, Hoshi University, Ebara, Shinagawa-ku, Tokyo, 142-8501, Japan
| | - Hiroyuki Kawai
- Fuel Cell System Development Center, Toyota Motor Corporation, Mishuku, Susono, Shizuoka, 410-1193, Japan
| | - Tsuyoshi Takahashi
- Fuel Cell System Development Center, Toyota Motor Corporation, Mishuku, Susono, Shizuoka, 410-1193, Japan
| | - Masaki Ando
- Fuel Cell System Development Center, Toyota Motor Corporation, Mishuku, Susono, Shizuoka, 410-1193, Japan
| | - Kazunari Nakajima
- Department of Systems Innovation, School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Yoshiaki Nishibayashi
- Department of Systems Innovation, School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
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9
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Gentil S, Lalaoui N, Dutta A, Nedellec Y, Cosnier S, Shaw WJ, Artero V, Le Goff A. Carbon-Nanotube-Supported Bio-Inspired Nickel Catalyst and Its Integration in Hybrid Hydrogen/Air Fuel Cells. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201611532] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Solène Gentil
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
- Laboratoire de Chimie et Biologie des Métaux; Univ. Grenoble Alpes, CNRS UMR5249, CEA; 38000 Grenoble France
| | - Noémie Lalaoui
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
| | - Arnab Dutta
- Pacific Northwest National Laboratory; Richland WA 99532 USA
- Current address: Chemistry Department; IIT Gandhinagar; Gujarat 382355 India
| | - Yannig Nedellec
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
| | - Serge Cosnier
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
| | - Wendy J. Shaw
- Pacific Northwest National Laboratory; Richland WA 99532 USA
| | - Vincent Artero
- Laboratoire de Chimie et Biologie des Métaux; Univ. Grenoble Alpes, CNRS UMR5249, CEA; 38000 Grenoble France
| | - Alan Le Goff
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
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10
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Gentil S, Lalaoui N, Dutta A, Nedellec Y, Cosnier S, Shaw WJ, Artero V, Le Goff A. Carbon-Nanotube-Supported Bio-Inspired Nickel Catalyst and Its Integration in Hybrid Hydrogen/Air Fuel Cells. Angew Chem Int Ed Engl 2017; 56:1845-1849. [DOI: 10.1002/anie.201611532] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2016] [Revised: 12/12/2016] [Indexed: 12/25/2022]
Affiliation(s)
- Solène Gentil
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
- Laboratoire de Chimie et Biologie des Métaux; Univ. Grenoble Alpes, CNRS UMR5249, CEA; 38000 Grenoble France
| | - Noémie Lalaoui
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
| | - Arnab Dutta
- Pacific Northwest National Laboratory; Richland WA 99532 USA
- Current address: Chemistry Department; IIT Gandhinagar; Gujarat 382355 India
| | - Yannig Nedellec
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
| | - Serge Cosnier
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
| | - Wendy J. Shaw
- Pacific Northwest National Laboratory; Richland WA 99532 USA
| | - Vincent Artero
- Laboratoire de Chimie et Biologie des Métaux; Univ. Grenoble Alpes, CNRS UMR5249, CEA; 38000 Grenoble France
| | - Alan Le Goff
- Univ. Grenoble Alpes, CNRS, DCM UMR 5250; 38000 Grenoble France
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11
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Rodriguez-Maciá P, Dutta A, Lubitz W, Shaw WJ, Rüdiger O. Direkter Leistungsvergleich eines bioinspirierten synthetischen Ni-Katalysators und einer [NiFe]-Hydrogenase, beide kovalent an eine Elektrode gebunden. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201502364] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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12
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Rodriguez-Maciá P, Dutta A, Lubitz W, Shaw WJ, Rüdiger O. Direct Comparison of the Performance of a Bio-inspired Synthetic Nickel Catalyst and a [NiFe]-Hydrogenase, Both Covalently Attached to Electrodes. Angew Chem Int Ed Engl 2015; 54:12303-7. [DOI: 10.1002/anie.201502364] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Indexed: 11/07/2022]
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13
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Kochem A, O'Hagan M, Wiedner ES, van Gastel M. Combined Spectroscopic and Electrochemical Detection of a NiI⋅⋅⋅HN Bonding Interaction with Relevance to Electrocatalytic H2Production. Chemistry 2015; 21:10338-47. [DOI: 10.1002/chem.201500954] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2015] [Indexed: 11/11/2022]
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14
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Bhagi-Damodaran A, Petrik ID, Marshall NM, Robinson H, Lu Y. Systematic tuning of heme redox potentials and its effects on O2 reduction rates in a designed oxidase in myoglobin. J Am Chem Soc 2014; 136:11882-5. [PMID: 25076049 PMCID: PMC4151708 DOI: 10.1021/ja5054863] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2014] [Indexed: 11/28/2022]
Abstract
Cytochrome c Oxidase (CcO) is known to catalyze the reduction of O2 to H2O efficiently with a much lower overpotential than most other O2 reduction catalysts. However, methods by which the enzyme fine-tunes the reduction potential (E°) of its active site and the corresponding influence on the O2 reduction activity are not well understood. In this work, we report systematic tuning of the heme E° in a functional model of CcO in myoglobin containing three histidines and one tyrosine in the distal pocket of heme. By removing hydrogen-bonding interactions between Ser92 and the proximal His ligand and a heme propionate, and increasing hydrophobicity of the heme pocket through Ser92Ala mutation, we have increased the heme E° from 95 ± 2 to 123 ± 3 mV. Additionally, replacing the native heme b in the CcO mimic with heme a analogs, diacetyl, monoformyl, and diformyl hemes, that posses electron-withdrawing groups, resulted in higher E° values of 175 ± 5, 210 ± 6, and 320 ± 10 mV, respectively. Furthermore, O2 consumption studies on these CcO mimics revealed a strong enhancement in O2 reduction rates with increasing heme E°. Such methods of tuning the heme E° through a combination of secondary sphere mutations and heme substitutions can be applied to tune E° of other heme proteins, allowing for comprehensive investigations of the relationship between E° and enzymatic activity.
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Affiliation(s)
- Ambika Bhagi-Damodaran
- Department
of Chemistry, University of Illinois, Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Igor D. Petrik
- Department
of Chemistry, University of Illinois, Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Nicholas M. Marshall
- Department
of Chemistry, University of Illinois, Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Howard Robinson
- Department
of Biology, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Yi Lu
- Department
of Chemistry, University of Illinois, Urbana−Champaign, Urbana, Illinois 61801, United States
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