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Li H, Dickschat JS. Enzymatic Synthesis of Diterpenoids from iso-GGPP III: A Geranylgeranyl Diphosphate Analog with a Shifted Double Bond. Chemistry 2024; 30:e202303560. [PMID: 37947363 DOI: 10.1002/chem.202303560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 11/10/2023] [Accepted: 11/10/2023] [Indexed: 11/12/2023]
Abstract
The analog of the diterpene precursor geranylgeranyl diphosphate with a double bond shifted from C14=C15 to C15=C16 (named iso-GGPP III) has been synthesized and enzymatically converted with six bacterial diterpene synthases; this allowed the isolation of nine unnatural diterpenes. For some of the enzyme-substrate combinations, the different reactivity implemented in the substrate analog iso-GGPP III opened reaction pathways that are not observed with natural GGPP, resulting in the formation of diterpenes with novel skeletons. A stereoselective deuteration strategy was used to assign the absolute configurations of the isolated diterpenes.
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Affiliation(s)
- Heng Li
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Jeroen S Dickschat
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
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2
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Taizoumbe KA, Steiner ST, Dickschat JS. Mechanistic Characterisation of Collinodiene Synthase, a Diterpene Synthase from Streptomyces collinus. Chemistry 2023; 29:e202302469. [PMID: 37579200 DOI: 10.1002/chem.202302469] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/14/2023] [Accepted: 08/14/2023] [Indexed: 08/16/2023]
Abstract
Two homologs of the diterpene synthase CotB2 from Streptomyces collinus (ScCotB2) and Streptomyces iakyrus (SiCotB2) were investigated for their products by in vitro incubations of the recombinant enzymes with geranylgeranyl pyrophosphate, followed by compound isolation and structure elucidation by NMR. ScCotB2 produced the new compound collinodiene, besides the canonical CotB2 product cyclooctat-9-en-7-ol, dolabella-3,7,18-triene and dolabella-3,7,12-triene, while SiCotB2 gave mainly cyclooctat-9-en-7-ol and only traces of dolabella-3,7,18-triene. The cyclisation mechanism towards the ScCotB2 products and their absolute configurations were investigated through isotopic labelling experiments.
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Affiliation(s)
- Kizerbo A Taizoumbe
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Simon T Steiner
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Jeroen S Dickschat
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
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3
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Li H, Dickschat JS. Diterpene Biosynthesis from Geranylgeranyl Diphosphate Analogues with Changed Reactivities Expands Skeletal Diversity. Angew Chem Int Ed Engl 2022; 61:e202211054. [PMID: 36066489 PMCID: PMC9826473 DOI: 10.1002/anie.202211054] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Indexed: 01/11/2023]
Abstract
Two analogues of the diterpene precursor geranylgeranyl diphosphate with shifted double bonds, named iso-GGPP I and iso-GGPP II, were enzymatically converted with twelve diterpene synthases from bacteria, fungi and protists. The changed reactivity in the substrate analogues resulted in the formation of 28 new diterpenes, many of which exhibit novel skeletons.
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Affiliation(s)
- Heng Li
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
| | - Jeroen S. Dickschat
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
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4
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Li H, Dickschat JS. Diterpene Biosynthesis from Geranylgeranyl Diphosphate Analogues with Changed Reactivities Expands Skeletal Diversity. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202211054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Heng Li
- University of Bonn: Rheinische Friedrich-Wilhelms-Universitat Bonn Kekulé-Institute for Organic Chemistry and Biochemistry GERMANY
| | - Jeroen S. Dickschat
- University of Bonn: Rheinische Friedrich-Wilhelms-Universitat Bonn Kekulé Institute for Organic Chemistry and Biochemistry Gerhard-Domagk-Straße 1 53121 Bonn GERMANY
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5
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Gong K, Yong D, Fu J, Li A, Zhang Y, Li R. Diterpenoids from Streptomyces: Structures, Biosyntheses and Bioactivities. Chembiochem 2022; 23:e202200231. [PMID: 35585772 DOI: 10.1002/cbic.202200231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 05/16/2022] [Indexed: 11/09/2022]
Abstract
Bacteria, especially Streptomyces spp., have been emerging as rich sources of natural diterpenoids with diverse structures and broad bioactivities. Here, we review diterpenoids biosynthesized by Streptomyces , with an emphasis on their structures, biosyntheses, and bioactivities. Although diterpenoids from Streptomyces are relatively rare compared to those from plants and fungi, their novel skeletons, biosyntheses and bioactivities present opportunities for discovering new drugs, enzyme mechanisms, and applications in bio-catalysis and metabolic pathway engineering.
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Affiliation(s)
- Kai Gong
- Shandong University, State Key Laboratory of Microbial Technology, CHINA
| | - Daojing Yong
- Shandong University, State Key Laboratory of Microbial Technology, CHINA
| | - Jun Fu
- Shandong University, State Key Laboratory of Microbial Technology, CHINA
| | - Aiying Li
- Shandong University, State Key Laboratory of Microbial Technology, CHINA
| | - Youming Zhang
- Shandong University, State Key Laboratory of Microbial Technology, CHINA
| | - Ruijuan Li
- Shandong University, State Key Laboratory of Microbial Technology, Binhai Road 72, 266237, Qingdao, CHINA
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6
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Chen B, Wu Q, Xu D, Zhang X, Ding Y, Bao S, Zhang X, Wang L, Chen Y. A Two-Phase Approach to Fusicoccane Synthesis To Uncover a Compound That Reduces Tumourigenesis in Pancreatic Cancer Cells. Angew Chem Int Ed Engl 2022; 61:e202117476. [PMID: 35166433 DOI: 10.1002/anie.202117476] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Indexed: 12/19/2022]
Abstract
Alterbrassicicene D (1) and 3(11)-epoxyhypoestenone (2) were synthesised via a two-phase approach featuring concise construction of the 5-8-5 tricyclic intermediate and a tandem base-mediated epoxide opening-transannular oxa-Michael addition cascade to forge the complex skeleton of 2. The route is scalable and we generated 15 g of the tricyclic intermediate in 8 steps from (R)-limonene and 720 mg of the penultimate bioactive intermediate in a protecting-group-free manner. Our synthesis enabled the structural determination of 2 and provided materials for preliminary anticancer evaluation. The penultimate intermediate showed therapeutic potential in terms of its ability to dramatically reduce the tumourigenic potential of PANC-1 pancreatic cancer cells according to a limiting dilution tumour-initiating assay. Our synthetic approach will facilitate unified access to naturally occurring fusicoccanes and their derivatives for anticancer evaluation.
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Affiliation(s)
- Bolin Chen
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, Nankai University, 38 Tongyan Road, Tianjin, 300353, P. R. China
| | - Qianwei Wu
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, Nankai University, 38 Tongyan Road, Tianjin, 300353, P. R. China
| | - Dongdong Xu
- State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, Nankai University, 38 Tongyan Road, Tianjin, 300353, P. R. China
| | - Xijing Zhang
- College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, P. R. China
| | - Yahui Ding
- College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, P. R. China
| | - Shiqi Bao
- Accendatech Company, Ltd, 7 Fengze Road, Tianjin, 300384, P. R. China
| | - Xuemei Zhang
- Accendatech Company, Ltd, 7 Fengze Road, Tianjin, 300384, P. R. China
| | - Liang Wang
- College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, P. R. China
| | - Yue Chen
- College of Chemistry, Nankai University, 94 Weijin Road, Tianjin, 300071, P. R. China
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7
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Chen B, Wu Q, Xu D, Zhang X, Ding Y, Bao S, Zhang X, Wang L, Chen Y. A Two‐Phase Approach to Fusicoccane Synthesis To Uncover a Compound That Reduces Tumourigenesis in Pancreatic Cancer Cells. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202117476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Bolin Chen
- State Key Laboratory of Medicinal Chemical Biology College of Pharmacy Nankai University 38 Tongyan Road Tianjin 300353 P. R. China
| | - Qianwei Wu
- State Key Laboratory of Medicinal Chemical Biology College of Pharmacy Nankai University 38 Tongyan Road Tianjin 300353 P. R. China
| | - Dongdong Xu
- State Key Laboratory of Medicinal Chemical Biology College of Pharmacy Nankai University 38 Tongyan Road Tianjin 300353 P. R. China
| | - Xijing Zhang
- College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 P. R. China
| | - Yahui Ding
- College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 P. R. China
| | - Shiqi Bao
- Accendatech Company, Ltd 7 Fengze Road Tianjin 300384 P. R. China
| | - Xuemei Zhang
- Accendatech Company, Ltd 7 Fengze Road Tianjin 300384 P. R. China
| | - Liang Wang
- College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 P. R. China
| | - Yue Chen
- College of Chemistry Nankai University 94 Weijin Road Tianjin 300071 P. R. China
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8
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Mitschke N, Christoffers J, Wilkes H. A Straightforward Synthesis of Trideuterated α‐Terpinene for Mechanistic Studies. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000684] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Nico Mitschke
- Institut für Chemie und Biologie des Meeres (ICBM) Carl von Ossietzky Universität Oldenburg 26111 Oldenburg Germany
| | - Jens Christoffers
- Institut für Chemie Carl von Ossietzky Universität Oldenburg 26111 Oldenburg Germany
| | - Heinz Wilkes
- Institut für Chemie und Biologie des Meeres (ICBM) Carl von Ossietzky Universität Oldenburg 26111 Oldenburg Germany
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9
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Lauterbach L, Goldfuss B, Dickschat JS. Two Diterpene Synthases from Chryseobacterium: Chryseodiene Synthase and Wanjudiene Synthase. Angew Chem Int Ed Engl 2020; 59:11943-11947. [PMID: 32342621 PMCID: PMC7383580 DOI: 10.1002/anie.202004691] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Indexed: 01/11/2023]
Abstract
Two bacterial diterpene synthases (DTSs) from Chryseobacterium were characterised. The first enzyme yielded the new compound chryseodiene that closely resembles the known fusicoccane diterpenes from fungi, but its experimentally and computationally studied cyclisation mechanism is fundamentally different to the mechanism of fusicoccadiene synthase. The second enzyme produced wanjudiene, a diterpene hydrocarbon with a new skeleton, besides traces of the enantiomer of bonnadiene that was recently discovered from Allokutzneria albata.
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Affiliation(s)
- Lukas Lauterbach
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
| | - Bernd Goldfuss
- Institute for Organic ChemistryUniversity of CologneGreinstraße 450939CologneGermany
| | - Jeroen S. Dickschat
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
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10
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Lauterbach L, Goldfuss B, Dickschat JS. Zwei Diterpensynthasen aus
Chryseobacterium
: Chryseodien‐Synthase und Wanjudien‐Synthase. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202004691] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Lukas Lauterbach
- Kekulé-Institut für Organische Chemie und Biochemie Universität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Bernd Goldfuss
- Institut für Organische Chemie, Universität zu Köln Greinstraße 4 50939 Köln Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie Universität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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11
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Murai K, Lauterbach L, Teramoto K, Quan Z, Barra L, Yamamoto T, Nonaka K, Shiomi K, Nishiyama M, Kuzuyama T, Dickschat JS. An Unusual Skeletal Rearrangement in the Biosynthesis of the Sesquiterpene Trichobrasilenol from Trichoderma. Angew Chem Int Ed Engl 2019; 58:15046-15050. [PMID: 31418991 PMCID: PMC7687074 DOI: 10.1002/anie.201907964] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 08/13/2019] [Indexed: 11/08/2022]
Abstract
The skeletons of some classes of terpenoids are unusual in that they contain a larger number of Me groups (or their biosynthetic equivalents such as olefinic methylene groups, hydroxymethyl groups, aldehydes, or carboxylic acids and their derivatives) than provided by their oligoprenyl diphosphate precursor. This is sometimes the result of an oxidative ring-opening reaction at a terpene-cyclase-derived molecule containing the regular number of Me group equivalents, as observed for picrotoxan sesquiterpenes. In this study a sesquiterpene cyclase from Trichoderma spp. is described that can convert farnesyl diphosphate (FPP) directly via a remarkable skeletal rearrangement into trichobrasilenol, a new brasilane sesquiterpene with one additional Me group equivalent compared to FPP. A mechanistic hypothesis for the formation of the brasilane skeleton is supported by extensive isotopic labelling studies.
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Affiliation(s)
- Keiichi Murai
- Graduate School of Agricultural and Life SciencesThe University of Tokyo1-1-1 Yayoi, Bunkyu-kuTokyo113-8657Japan
| | - Lukas Lauterbach
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
| | - Kazuya Teramoto
- Biotechnology Research CenterThe University of Tokyo1-1-1 Yayoi, Bunkyu-kuTokyo113-8657Japan
| | - Zhiyang Quan
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
| | - Lena Barra
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
| | - Tsuyoshi Yamamoto
- Kitasato Institute for Life SciencesKitasato University5-9-1 Shirokane, Minato-kuTokyo108-8641Japan
| | - Kenichi Nonaka
- Kitasato Institute for Life SciencesKitasato University5-9-1 Shirokane, Minato-kuTokyo108-8641Japan
| | - Kazuro Shiomi
- Kitasato Institute for Life SciencesKitasato University5-9-1 Shirokane, Minato-kuTokyo108-8641Japan
| | - Makoto Nishiyama
- Biotechnology Research CenterThe University of Tokyo1-1-1 Yayoi, Bunkyu-kuTokyo113-8657Japan
- Collaborative Research Institute for Innovative MicrobiologyThe University of Tokyo1-1-1 Yayoi, Bunkyu-kuTokyo113-8657Japan
| | - Tomohisa Kuzuyama
- Graduate School of Agricultural and Life SciencesThe University of Tokyo1-1-1 Yayoi, Bunkyu-kuTokyo113-8657Japan
- Collaborative Research Institute for Innovative MicrobiologyThe University of Tokyo1-1-1 Yayoi, Bunkyu-kuTokyo113-8657Japan
| | - Jeroen S. Dickschat
- Kekulé-Institute for Organic Chemistry and BiochemistryUniversity of BonnGerhard-Domagk-Straße 153121BonnGermany
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12
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Murai K, Lauterbach L, Teramoto K, Quan Z, Barra L, Yamamoto T, Nonaka K, Shiomi K, Nishiyama M, Kuzuyama T, Dickschat JS. Eine ungewöhnliche Gerüstumlagerung in der Biosynthese des Sesquiterpens Trichobrasilenol aus Trichoderma. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201907964] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Keiichi Murai
- Graduate School of Agricultural and Life Sciences The University of Tokyo 1-1-1 Yayoi, Bunkyu-ku Tokyo 113-8657 Japan
| | - Lukas Lauterbach
- Kekulé-Institute for Organic Chemistry and Biochemistry University of Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Kazuya Teramoto
- Biotechnology Research Center The University of Tokyo 1-1-1 Yayoi, Bunkyu-ku Tokyo 113-8657 Japan
| | - Zhiyang Quan
- Kekulé-Institute for Organic Chemistry and Biochemistry University of Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Lena Barra
- Kekulé-Institute for Organic Chemistry and Biochemistry University of Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Tsuyoshi Yamamoto
- Kitasato Institute for Life Sciences Kitasato University 5-9-1 Shirokane, Minato-ku Tokyo 108-8641 Japan
| | - Kenichi Nonaka
- Kitasato Institute for Life Sciences Kitasato University 5-9-1 Shirokane, Minato-ku Tokyo 108-8641 Japan
| | - Kazuro Shiomi
- Kitasato Institute for Life Sciences Kitasato University 5-9-1 Shirokane, Minato-ku Tokyo 108-8641 Japan
| | - Makoto Nishiyama
- Biotechnology Research Center The University of Tokyo 1-1-1 Yayoi, Bunkyu-ku Tokyo 113-8657 Japan
- Collaborative Research Institute for Innovative Microbiology The University of Tokyo 1-1-1 Yayoi, Bunkyu-ku Tokyo 113-8657 Japan
| | - Tomohisa Kuzuyama
- Graduate School of Agricultural and Life Sciences The University of Tokyo 1-1-1 Yayoi, Bunkyu-ku Tokyo 113-8657 Japan
- Collaborative Research Institute for Innovative Microbiology The University of Tokyo 1-1-1 Yayoi, Bunkyu-ku Tokyo 113-8657 Japan
| | - Jeroen S. Dickschat
- Kekulé-Institute for Organic Chemistry and Biochemistry University of Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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13
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Greule A, Stok JE, De Voss JJ, Cryle MJ. Unrivalled diversity: the many roles and reactions of bacterial cytochromes P450 in secondary metabolism. Nat Prod Rep 2019; 35:757-791. [PMID: 29667657 DOI: 10.1039/c7np00063d] [Citation(s) in RCA: 140] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Covering: 2000 up to 2018 The cytochromes P450 (P450s) are a superfamily of heme-containing monooxygenases that perform diverse catalytic roles in many species, including bacteria. The P450 superfamily is widely known for the hydroxylation of unactivated C-H bonds, but the diversity of reactions that P450s can perform vastly exceeds this undoubtedly impressive chemical transformation. Within bacteria, P450s play important roles in many biosynthetic and biodegradative processes that span a wide range of secondary metabolite pathways and present diverse chemical transformations. In this review, we aim to provide an overview of the range of chemical transformations that P450 enzymes can catalyse within bacterial secondary metabolism, with the intention to provide an important resource to aid in understanding of the potential roles of P450 enzymes within newly identified bacterial biosynthetic pathways.
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Affiliation(s)
- Anja Greule
- The Monash Biomedicine Discovery Institute, Department of Biochemistry and Molecular Biology, ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia. and EMBL Australia, Monash University, Clayton, Victoria 3800, Australia
| | - Jeanette E Stok
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia.
| | - James J De Voss
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia.
| | - Max J Cryle
- The Monash Biomedicine Discovery Institute, Department of Biochemistry and Molecular Biology, ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia. and EMBL Australia, Monash University, Clayton, Victoria 3800, Australia and Department of Biomolecular Mechanisms, Max Planck Institute for Medical Research, Jahnstrasse 29, 69120 Heidelberg, Germany.
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14
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Affiliation(s)
- Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und BiochemieRheinische Friedrich-Wilhelms-Universität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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15
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Abstract
This Minireview summarises recent developments in the biosynthesis of diterpenes by diterpene synthases in bacteria. It is structured by the class of enzyme involved in the first committed step towards diterpenes, starting with type I diterpene synthases, followed by type II enzymes and the more recently discovered UbiA-related diterpene synthases. A special emphasis lies on the reaction mechanisms of diterpene synthases that convert simple linear precursors through cationic cascades into structurally complex, usually polycyclic carbon skeletons with multiple stereogenic centres. A further main focus of this Minireview is a discussion of how these mechanisms can be unravelled. Downstream modifications to bioactive molecules are also covered.
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Affiliation(s)
- Jeroen S Dickschat
- Kekulé-Institute for Organic Chemistry and Biochemistry, Rheinische Friedrich-Wilhelms University of Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
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16
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Rinkel J, Steiner ST, Dickschat JS. Diterpenbiosynthese in Actinomyceten: Studien an Cattleyensynthase und Phomopsensynthase. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902950] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institut für Organische Chemie und BiochemieUniversität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Simon T. Steiner
- Kekulé-Institut für Organische Chemie und BiochemieUniversität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und BiochemieUniversität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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17
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Rinkel J, Steiner ST, Dickschat JS. Diterpene Biosynthesis in Actinomycetes: Studies on Cattleyene Synthase and Phomopsene Synthase. Angew Chem Int Ed Engl 2019; 58:9230-9233. [PMID: 31034729 DOI: 10.1002/anie.201902950] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Revised: 04/18/2019] [Indexed: 12/20/2022]
Abstract
Three diterpene synthases from actinomycetes have been studied. The first enzyme from Streptomyces cattleya produced the novel compound cattleyene. The other two enzymes from Nocardia testacea and Nocardia rhamnosiphila were identified as phomopsene synthases. The cyclisation mechanism of cattleyene synthase and the EIMS fragmentation mechanism of its product were extensively studied by incubation experiments with isotopically labelled precursors. Oxidative transformations expanded the chemical space of these unique diterpenes.
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Affiliation(s)
- Jan Rinkel
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Simon T Steiner
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Jeroen S Dickschat
- Kekulé-Institute for Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
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18
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Rinkel J, Lauterbach L, Dickschat JS. Eine verzweigte Diterpenkaskade: der Mechanismus der Spinodien-Synthase aus Saccharopolyspora spinosa. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201812216] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Lukas Lauterbach
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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19
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Rinkel J, Lauterbach L, Dickschat JS. A Branched Diterpene Cascade: The Mechanism of Spinodiene Synthase from Saccharopolyspora spinosa. Angew Chem Int Ed Engl 2018; 58:452-455. [DOI: 10.1002/anie.201812216] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2018] [Indexed: 11/10/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
| | - Lukas Lauterbach
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
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20
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Lauterbach L, Rinkel J, Dickschat JS. Zwei bakterielle Diterpensynthasen aus
Allokutzneria albata
für Bonnadien sowie für Phomopsen und Allokutzneren. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201803800] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Lukas Lauterbach
- Kekulé-Institut für Organische Chemie und BiochemieRheinische Friedrich-Wilhelms-Universität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jan Rinkel
- Kekulé-Institut für Organische Chemie und BiochemieRheinische Friedrich-Wilhelms-Universität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und BiochemieRheinische Friedrich-Wilhelms-Universität Bonn Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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21
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Lauterbach L, Rinkel J, Dickschat JS. Two Bacterial Diterpene Synthases from Allokutzneria albata Produce Bonnadiene, Phomopsene, and Allokutznerene. Angew Chem Int Ed Engl 2018; 57:8280-8283. [PMID: 29758116 DOI: 10.1002/anie.201803800] [Citation(s) in RCA: 81] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Indexed: 11/08/2022]
Abstract
Two diterpene synthases from Allokutzneria albata were studied for their products, resulting in the identification of the new compound bonnadiene from the first enzyme. Although phylogenetically unrelated to fungal phomopsene synthase, the second enzyme produced a mixture of phomopsene and a biosynthetically linked new compound, allokutznerene, as well as spiroviolene. Both enzymes were subjected to in-depth mechanistic studies involving isotopic labelling experiments, metal-cofactor variation, and site-directed mutagenesis. Oxidation products of phomopsene and allokutznerene are also discussed.
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Affiliation(s)
- Lukas Lauterbach
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Jeroen S Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
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22
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Mitsuhashi T, Abe I. Chimeric Terpene Synthases Possessing both Terpene Cyclization and Prenyltransfer Activities. Chembiochem 2018; 19:1106-1114. [PMID: 29675947 DOI: 10.1002/cbic.201800120] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Indexed: 12/12/2022]
Abstract
Prenyltransferase (PT) and terpene synthase (TPS) are key enzymes in the formation of the basic carbon skeletons of terpenoids. The PTs determine the prenyl carbon chain length, whereas TPSs generate the structural complexity of the molecular scaffolds, forming various ring structures. Normally, PTs and TPSs are separate, independent enzymes. However, in 2007, a chimeric enzyme, in which the PT was fused with the TPS, was found in a fungus. Recent studies have revealed that such chimeric TPSs are widely distributed in fungi and function in the biosyntheses of various terpene natural products, including sesterterpenes, which are a relatively rare group of terpenoids. This review summarizes the accumulated knowledge of these recently discovered, unique, chimeric TPSs.
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Affiliation(s)
- Takaaki Mitsuhashi
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Ikuro Abe
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
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23
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Rinkel J, Lauterbach L, Rabe P, Dickschat JS. Zwei Diterpensynthasen für Spiroalbaten und Cembren A aus Allokutzneria albata. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800385] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie; Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Lukas Lauterbach
- Kekulé-Institut für Organische Chemie und Biochemie; Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie; Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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24
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Rinkel J, Lauterbach L, Rabe P, Dickschat JS. Two Diterpene Synthases for Spiroalbatene and Cembrene A from Allokutzneria albata. Angew Chem Int Ed Engl 2018; 57:3238-3241. [DOI: 10.1002/anie.201800385] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Revised: 01/26/2018] [Indexed: 12/30/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
| | - Lukas Lauterbach
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
| | - Patrick Rabe
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
| | - Jeroen S. Dickschat
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
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25
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Rinkel J, Lauterbach L, Dickschat JS. Spata-13,17-diene Synthase-An Enzyme with Sesqui-, Di-, and Sesterterpene Synthase Activity from Streptomyces xinghaiensis. Angew Chem Int Ed Engl 2017; 56:16385-16389. [DOI: 10.1002/anie.201711142] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Indexed: 11/06/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
| | - Lukas Lauterbach
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
| | - Jeroen S. Dickschat
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
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26
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Spata-13,17-dien-Synthase - ein Enzym mit Sesqui-, Di- und Sesterterpen-Synthase-Aktivität aus Streptomyces xinghaiensis. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201711142] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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27
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Rinkel J, Rabe P, Chen X, Köllner TG, Chen F, Dickschat JS. Mechanisms of the Diterpene Cyclases β-Pinacene Synthase fromDictyostelium discoideumand Hydropyrene Synthase fromStreptomyces clavuligerus. Chemistry 2017; 23:10501-10505. [DOI: 10.1002/chem.201702704] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
| | - Patrick Rabe
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
| | - Xinlu Chen
- Department of Plant Sciences; University of Tennessee; 2431 Joe Johnson Drive Knoxville TN 37996-4561 USA
| | - Tobias G. Köllner
- Max Planck Institute for Chemical Ecology; Hans-Knöll-Straße 8 07745 Jena Germany
| | - Feng Chen
- Department of Plant Sciences; University of Tennessee; 2431 Joe Johnson Drive Knoxville TN 37996-4561 USA
| | - Jeroen S. Dickschat
- Kekulé-Institute of Organic Chemistry and Biochemistry; University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
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28
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Tantillo DJ. Bedeutung der inhärenten Substratreaktivität bei enzymvermittelten Cyclisierungen/Umlagerungen von Carbokationen. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201702363] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Dean J. Tantillo
- Department of Chemistry University of California—Davis 1 Shields Avenue Davis CA 95616 USA
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29
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Tantillo DJ. Importance of Inherent Substrate Reactivity in Enzyme-Promoted Carbocation Cyclization/Rearrangements. Angew Chem Int Ed Engl 2017; 56:10040-10045. [PMID: 28349600 DOI: 10.1002/anie.201702363] [Citation(s) in RCA: 115] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2017] [Indexed: 11/08/2022]
Abstract
The importance of inherent substrate reactivity for terpene synthase enzymes is discussed, with a focus on recent experimental tests of predictions derived from computations on gas-phase reactivity of carbocations.
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Affiliation(s)
- Dean J Tantillo
- Department of Chemistry, University of California-Davis, 1 Shields Avenue, Davis, CA, 95616, USA
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30
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Affiliation(s)
- Jeroen S. Dickschat
- Kekulé-Institute of Organic Chemistry and Biochemistry; Rheinische Friedrich Wilhelms University of Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Germany
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31
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Yang YL, Zhang S, Ma K, Xu Y, Tao Q, Chen Y, Chen J, Guo S, Ren J, Wang W, Tao Y, Yin WB, Liu H. Discovery and Characterization of a New Family of Diterpene Cyclases in Bacteria and Fungi. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201700565] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Yan-long Yang
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Shasha Zhang
- Chinese Academy of Sciences Key Laboratory of Microbial, Physiological, and Metabolic Engineering; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Ke Ma
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
| | - Yuxing Xu
- Key Laboratory of Economic Plants and Biotechnology; Yunnan Key Laboratory for Wild Plant Resources; Kunming Institute of Botany; Chinese Academy of Sciences; Kunming 650201 Yunnan China
| | - Qiaoqiao Tao
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
| | - Yihua Chen
- State Key Laboratory of Microbial Resources, Yunnan Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Juan Chen
- Institute of Medicinal Plant Development; Chinese Academy of Medical Sciences & Peking Union Medical College; Beijing 100193 China
| | - Shunxing Guo
- Institute of Medicinal Plant Development; Chinese Academy of Medical Sciences & Peking Union Medical College; Beijing 100193 China
| | - Jinwei Ren
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Wenzhao Wang
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Yong Tao
- Chinese Academy of Sciences Key Laboratory of Microbial, Physiological, and Metabolic Engineering; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Wen-Bing Yin
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
| | - Hongwei Liu
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
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32
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Yang YL, Zhang S, Ma K, Xu Y, Tao Q, Chen Y, Chen J, Guo S, Ren J, Wang W, Tao Y, Yin WB, Liu H. Discovery and Characterization of a New Family of Diterpene Cyclases in Bacteria and Fungi. Angew Chem Int Ed Engl 2017; 56:4749-4752. [DOI: 10.1002/anie.201700565] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Revised: 03/05/2017] [Indexed: 01/09/2023]
Affiliation(s)
- Yan-long Yang
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Shasha Zhang
- Chinese Academy of Sciences Key Laboratory of Microbial, Physiological, and Metabolic Engineering; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Ke Ma
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
| | - Yuxing Xu
- Key Laboratory of Economic Plants and Biotechnology; Yunnan Key Laboratory for Wild Plant Resources; Kunming Institute of Botany; Chinese Academy of Sciences; Kunming 650201 Yunnan China
| | - Qiaoqiao Tao
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
| | - Yihua Chen
- State Key Laboratory of Microbial Resources, Yunnan Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Juan Chen
- Institute of Medicinal Plant Development; Chinese Academy of Medical Sciences & Peking Union Medical College; Beijing 100193 China
| | - Shunxing Guo
- Institute of Medicinal Plant Development; Chinese Academy of Medical Sciences & Peking Union Medical College; Beijing 100193 China
| | - Jinwei Ren
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Wenzhao Wang
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Yong Tao
- Chinese Academy of Sciences Key Laboratory of Microbial, Physiological, and Metabolic Engineering; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
| | - Wen-Bing Yin
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
| | - Hongwei Liu
- State Key Laboratory of Mycology; Institute of Microbiology; Chinese Academy of Sciences; Beijing 100101 China
- Savaid Medical School; University of Chinese Academy of Sciences; Beijing 100049 China
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33
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Rabe P, Rinkel J, Dolja E, Schmitz T, Nubbemeyer B, Luu TH, Dickschat JS. Mechanistische Studien an zwei bakteriellen Diterpencyclasen: Spiroviolen-Synthase und Tsukubadien-Synthase. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201612439] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Etilia Dolja
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Thomas Schmitz
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Britta Nubbemeyer
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - T. Hoang Luu
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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34
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Rabe P, Rinkel J, Dolja E, Schmitz T, Nubbemeyer B, Luu TH, Dickschat JS. Mechanistic Investigations of Two Bacterial Diterpene Cyclases: Spiroviolene Synthase and Tsukubadiene Synthase. Angew Chem Int Ed Engl 2017; 56:2776-2779. [PMID: 28146322 DOI: 10.1002/anie.201612439] [Citation(s) in RCA: 102] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Indexed: 01/14/2023]
Abstract
The mechanisms of two diterpene cyclases from streptomycetes-one with an unknown product that was identified as the spirocyclic hydrocarbon spiroviolene and one with the known product tsukubadiene-were investigated in detail by isotope labeling experiments. Although the structures of the products were very different, the cyclization mechanisms of both enzymes proceed through the same initial cyclization reactions, before they diverge towards the individual products, which is reflected in the close phylogenetic relationship of the enzymes.
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Affiliation(s)
- Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Etilia Dolja
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Thomas Schmitz
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Britta Nubbemeyer
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - T Hoang Luu
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Jeroen S Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
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35
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Rinkel J, Rabe P, Garbeva P, Dickschat JS. Über 1,3-Hydridverschiebungen in Sesquiterpen-Cyclisierungen. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201608042] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Paolina Garbeva
- Nederlands Instituut voor Ecologie; Koninklijke Nederlandse Akademie van Wetenschappen; Droevendaalsesteeg 10 6708 PB Wageningen Niederlande
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
- Nederlands Instituut voor Ecologie; Koninklijke Nederlandse Akademie van Wetenschappen; Droevendaalsesteeg 10 6708 PB Wageningen Niederlande
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36
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Rinkel J, Rabe P, Garbeva P, Dickschat JS. Lessons from 1,3-Hydride Shifts in Sesquiterpene Cyclizations. Angew Chem Int Ed Engl 2016; 55:13593-13596. [PMID: 27666571 DOI: 10.1002/anie.201608042] [Citation(s) in RCA: 50] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Indexed: 11/09/2022]
Abstract
Stereospecifically labelled precursors were subjected to conversion by seven bacterial sesquiterpene cyclases to investigate the stereochemistry of their initial 1,10-cyclisation-1,3-hydride shift cascades. Enzymes with products of known absolute configuration showed a coherent stereochemical course, except for (-)-α-amorphene synthase, for which the obtained results are better explained by an initial 1,6-cyclisation. The link between the absolute configuration of the product and the stereochemical course of the 1,3-hydride shifts enabled assignment of the absolute configurations of three enzyme products, which were confirmed independently through the absolute configuration of the common byproduct germacrene D-4-ol.
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Affiliation(s)
- Jan Rinkel
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Paolina Garbeva
- Nederlands Instituut voor Ecologie, Koninklijke Nederlandse Akademie van Wetenschappen, Droevendaalsesteeg 10, 6708 PB, Wageningen, The Netherlands
| | - Jeroen S Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany. .,Nederlands Instituut voor Ecologie, Koninklijke Nederlandse Akademie van Wetenschappen, Droevendaalsesteeg 10, 6708 PB, Wageningen, The Netherlands.
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37
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Klapschinski TA, Rabe P, Dickschat JS. Pristinol, a Sesquiterpene Alcohol with an Unusual Skeleton from Streptomyces pristinaespiralis. Angew Chem Int Ed Engl 2016; 55:10141-4. [PMID: 27403888 DOI: 10.1002/anie.201605425] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Indexed: 11/11/2022]
Abstract
A terpene cyclase from Streptomyces pristinaespiralis was characterized as the synthase for (+)-(2S,3S,9R)-pristinol. The structure of this sesquiterpene alcohol, which has a new carbon skeleton, was established by NMR spectroscopy and single-wavelength anomalous-dispersion X-ray crystallography. Extensive isotopic labelling experiments were performed to distinguish between various possible cyclization mechanisms of the terpene cyclase and to decipher the EI-MS fragmentation mechanism for pristinol.
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Affiliation(s)
- Tim A Klapschinski
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany
| | - Jeroen S Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Straße 1, 53121, Bonn, Germany.
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Klapschinski TA, Rabe P, Dickschat JS. Pristinol, ein Sesquiterpen-Alkohol mit ungewöhnlichem Gerüst ausStreptomyces pristinaespiralis. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605425] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Tim A. Klapschinski
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Straße 1 53121 Bonn Deutschland
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Identification, characterization and molecular adaptation of class I redox systems for the production of hydroxylated diterpenoids. Microb Cell Fact 2016; 15:86. [PMID: 27216162 PMCID: PMC4877809 DOI: 10.1186/s12934-016-0487-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 05/11/2016] [Indexed: 12/31/2022] Open
Abstract
Background De novo production of multi-hydroxylated diterpenoids is challenging due to the lack of efficient redox systems. Results In this study a new reductase/ferredoxin system from Streptomyces afghaniensis (AfR·Afx) was identified, which allowed the Escherichia coli-based production of the trihydroxylated diterpene cyclooctatin, a potent inhibitor of human lysophospholipase. This production system provides a 43-fold increase in cyclooctatin yield (15 mg/L) compared to the native producer. AfR·Afx is superior in activating the cylcooctatin-specific class I P450s CotB3/CotB4 compared to the conventional Pseudomonas putida derived PdR·Pdx model. To enhance the activity of the PdR·Pdx system, the molecular basis for these activity differences, was examined by molecular engineering. Conclusion We demonstrate that redox system engineering can boost and harmonize the catalytic efficiency of class I hydroxylase enzyme cascades. Enhancing CotB3/CotB4 activities also provided for identification of CotB3 substrate promiscuity and sinularcasbane D production, a functionalized diterpenoid originally isolated from the soft coral Sinularia sp. Electronic supplementary material The online version of this article (doi:10.1186/s12934-016-0487-6) contains supplementary material, which is available to authorized users.
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Rabe P, Janusko A, Goldfuss B, Dickschat JS. Experimental and Theoretical Studies on Corvol Ether Biosynthesis. Chembiochem 2015; 17:146-9. [DOI: 10.1002/cbic.201500543] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Indexed: 11/10/2022]
Affiliation(s)
- Patrick Rabe
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
| | - Aron Janusko
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
| | - Bernd Goldfuss
- Department für Chemie; Universität zu Köln; Greinstrasse 4 50939 Köln Germany
| | - Jeroen S. Dickschat
- Kekulé-Institut für Organische Chemie und Biochemie; Rheinische Friedrich-Wilhelms-Universität Bonn; Gerhard-Domagk-Strasse 1 53121 Bonn Germany
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Görner C, Hirte M, Huber S, Schrepfer P, Brück T. Stereoselective chemo-enzymatic oxidation routes for (1R,3E,7E,11S,12S)-3,7,18-dolabellatriene. Front Microbiol 2015; 6:1115. [PMID: 26528263 PMCID: PMC4602142 DOI: 10.3389/fmicb.2015.01115] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Accepted: 09/28/2015] [Indexed: 11/13/2022] Open
Abstract
The diterpene (1R,3E,7E,11S,12S)-3,7,18-dolabellatriene from the marine brown alga Dilophus spiralis belongs to the dolabellanes natural product family and has antimicrobial activity against multi-drug resistant Staphylococcus aureus. Recently, we generated a CotB2 diterpene synthase mutant (W288G), which instead of its native product cyclooctat-9-en-7-ol, generates (1R,3E,7E,11S,12S)-3,7,18-dolabellatriene. In vivo CotB2 W288G reconstitution in an Escherichia coli based terpene production system, allowed efficient production of this olefinic macrocycle. To diversify the 3,7,18-dolabellatriene bioactivity we evaluated chemical and enzymatic methods for selective oxidation. Epoxidation by acetic peracid, which was formed in situ by a lipase catalyzed reaction of acetic acid with H2O2, provided efficient access to two monooxidized dolabellanes and to a novel di-epoxidated dolabellane species. These compounds could act as synthons en-route to new dolabellanes with diversified bioactivities. Furthermore, we demonstrate the almost quantitative 3,7,18-dolabellatriene conversion into the new, non-natural compound (1R,3E,7E,11S,12S,18R)-dolabella-3,7-diene-20-ol by hydroboration-oxidation with an enantiomeric excess of 94%, for the first time.
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Affiliation(s)
- Christian Görner
- Fachgebiet für Industrielle Biokatalyse, Department für Chemie, Technische Universität München Garching, Germany
| | - Max Hirte
- Fachgebiet für Industrielle Biokatalyse, Department für Chemie, Technische Universität München Garching, Germany
| | - Stephanie Huber
- Fachgebiet für Industrielle Biokatalyse, Department für Chemie, Technische Universität München Garching, Germany
| | - Patrick Schrepfer
- Fachgebiet für Industrielle Biokatalyse, Department für Chemie, Technische Universität München Garching, Germany
| | - Thomas Brück
- Fachgebiet für Industrielle Biokatalyse, Department für Chemie, Technische Universität München Garching, Germany
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