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Bosveli A, Griboura N, Kampouropoulos I, Kalaitzakis D, Montagnon T, Vassilikogiannakis G. The Rapid Synthesis of Colibactin Warhead Model Compounds Using New Metal-Free Photocatalytic Cyclopropanation Reactions Facilitates the Investigation of Biological Mechanisms. Chemistry 2023; 29:e202301713. [PMID: 37452669 DOI: 10.1002/chem.202301713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/06/2023] [Accepted: 07/11/2023] [Indexed: 07/18/2023]
Abstract
Herein, we report the synthesis of a series of colibactin warhead model compounds using two newly developed metal-free photocatalytic cyclopropanation reactions. These mild cyclopropanations expand the known applications of eosin within synthesis. A halogen atom transfer reaction mode has been harnessed so that dihalides can be used as the cyclopropanating agents. The colibactin warhead models were then used to provide new insight into two key mechanisms in colibactin chemistry. An explanation is provided for why the colibactin warhead sometimes undergoes a ring expansion-addition reaction to give fused cyclobutyl products while at other times nucleophiles add directly to the cyclopropyl unit (as when DNA adds to colibactin). Finally, we provide some evidence that Cu(II) chelated to colibactin may catalyze an important oxidation of the colibactin-DNA adduct. The Cu(I) generated as a result could then also play a role in inducing double strand breaks in DNA.
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Affiliation(s)
- Artemis Bosveli
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
| | - Nefeli Griboura
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
| | | | - Dimitris Kalaitzakis
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
| | - Tamsyn Montagnon
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete
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Olivier WJ, Smith JA, Bissember AC. Synthesis of Pyrrolidine- and γ-Lactam-Containing Natural Products and Related Compounds from Pyrrole Scaffolds. CHEM REC 2021; 22:e202100277. [PMID: 34862727 DOI: 10.1002/tcr.202100277] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 11/18/2021] [Indexed: 11/11/2022]
Abstract
Polycyclic alkaloid natural products featuring pyrrolidine and pyrrolidinone motifs remain enduring targets of total synthesis endeavors. Pyrrole and its derivatives have been exploited to access many such frameworks, including alkaloids belonging to the Aspidosperma, Stemona, and batzelladine families. In this article, a selection of exemplars that highlight the utility of pyrrole-based approaches to facilitate total syntheses of pyrrolidine- and pyrrolidinone-containing alkaloids and related molecules are showcased.
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Affiliation(s)
- Wesley J Olivier
- School of Natural Sciences-Chemistry, University of Tasmania Hobart, Tasmania, Australia
| | - Jason A Smith
- School of Natural Sciences-Chemistry, University of Tasmania Hobart, Tasmania, Australia
| | - Alex C Bissember
- School of Natural Sciences-Chemistry, University of Tasmania Hobart, Tasmania, Australia
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3
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De Geyter E, Antonatou E, Kalaitzakis D, Smolen S, Iyer A, Tack L, Ongenae E, Vassilikogiannakis G, Madder A. 5-Hydroxy-pyrrolone based building blocks as maleimide alternatives for protein bioconjugation and single-site multi-functionalization. Chem Sci 2021; 12:5246-5252. [PMID: 34163760 PMCID: PMC8179572 DOI: 10.1039/d0sc05881e] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2020] [Accepted: 02/15/2021] [Indexed: 11/23/2022] Open
Abstract
Recent dramatic expansion in potential uses of protein conjugates has fueled the development of a wide range of protein modification methods; however, the desirable single-site multi-functionalization of proteins has remained a particularly intransigent challenge. Herein, we present the application of 5-hydroxy-1,5-dihydro-2H-pyrrol-2-ones (5HP2Os) as advantageous alternatives to widely used maleimides for the chemo- and site-selective labeling of cysteine residues within proteins. A variety of 5HP2O building blocks have been synthesized using a one-pot photooxidation reaction starting from simple and readily accessible furans and using visible light and oxygen. These novel reagents display excellent cysteine selectivity and also yield thiol conjugates with superior stability. 5HP2O building blocks offer a unique opportunity to introduce multiple new functionalities into a protein at a single site and in a single step, thus, significantly enhancing the resultant conjugate's properties.
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Affiliation(s)
- Ewout De Geyter
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
| | - Eirini Antonatou
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
| | - Dimitris Kalaitzakis
- Department of Chemistry, University of Crete Vasilika Vouton 71003 Iraklion Crete Greece
| | - Sabina Smolen
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
| | - Abhishek Iyer
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
| | - Laure Tack
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
| | - Emiel Ongenae
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
| | | | - Annemieke Madder
- Organic and Biomimetic Chemistry Research Group OBCR, Department of Organic and Macromolecular Chemistry, Faculty of Sciences, Ghent University Krijgslaan 281 S4 9000 Ghent Belgium
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Kalaitzakis D, Bosveli A, Sfakianaki K, Montagnon T, Vassilikogiannakis G. Multi-Photocatalyst Cascades: Merging Singlet Oxygen Photooxygenations with Photoredox Catalysis for the Synthesis of Alkaloid Frameworks. Angew Chem Int Ed Engl 2021; 60:4335-4341. [PMID: 33119205 DOI: 10.1002/anie.202012379] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 10/02/2020] [Indexed: 12/13/2022]
Abstract
The development of photocascades that rapidly transform simple and readily accessible furan substrates into polycyclic alkaloid frameworks or erythrina natural products is described. Each of the sequences developed makes use of photocatalyzed energy transfer processes, which generate singlet oxygen, to set up the substrates for the second photocatalyzed reaction, wherein electron transfer generates carbon-centered radicals for the cyclizations that give the final complex frameworks. A chemical switch has been developed that can "switch off" one photocatalyst; thus, allowing a second photocatalyst to take over control of the sequence. As a corollary, this strategy represents the first time it has been possible to use multiple photocatalysts in photocascades, and, as such, it expands significantly the reactions that can be included in such cascades and the order in which they can be initiated.
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Affiliation(s)
- Dimitris Kalaitzakis
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete, Greece
| | - Artemis Bosveli
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete, Greece
| | - Kalliopi Sfakianaki
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete, Greece
| | - Tamsyn Montagnon
- Department of Chemistry, University of Crete, Vasilika Vouton, 71003, Iraklion, Crete, Greece
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Kalaitzakis D, Bosveli A, Sfakianaki K, Montagnon T, Vassilikogiannakis G. Multi‐Photocatalyst Cascades: Merging Singlet Oxygen Photooxygenations with Photoredox Catalysis for the Synthesis of Alkaloid Frameworks. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202012379] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Dimitris Kalaitzakis
- Department of Chemistry University of Crete Vasilika Vouton 71003 Iraklion Crete Greece
| | - Artemis Bosveli
- Department of Chemistry University of Crete Vasilika Vouton 71003 Iraklion Crete Greece
| | - Kalliopi Sfakianaki
- Department of Chemistry University of Crete Vasilika Vouton 71003 Iraklion Crete Greece
| | - Tamsyn Montagnon
- Department of Chemistry University of Crete Vasilika Vouton 71003 Iraklion Crete Greece
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He Y, Lou J, Zhou YG, Yu Z. ZnCl 2 -Catalyzed [4+1] Annulation of Alkylthio-Substituted Enaminones and Enaminothiones with Sulfur Ylides. Chemistry 2020; 26:4941-4946. [PMID: 31943441 DOI: 10.1002/chem.201905483] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 01/04/2020] [Indexed: 11/09/2022]
Abstract
Concise construction of furan and thiophene units has played an important role in the synthesis of potentially bioactive compounds and functional materials. Herein, an efficient Lewis acid ZnCl2 catalyzed [4+1] annulation of alkylthio-substituted enaminones is reported, that is, α-oxo ketene N,S-acetals with sulfur ylides to afford 2-acyl-3-aminofuran derivatives. In a similar fashion, [4+1] annulation of the corresponding enaminothiones, that is, α-thioxo ketene N,S-acetals, with sulfur ylides efficiently proceeded to give multisubstituted 3-aminothiophenes. This method features wide substrate scopes as well as broad functional group tolerance, offering a concise route to highly functionalized furans and thiophenes.
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Affiliation(s)
- Yuan He
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Jiang Lou
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P. R. China.,University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Yong-Gui Zhou
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P. R. China
| | - Zhengkun Yu
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P. R. China.,State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 354 Fenglin Road, Shanghai, 200032, P. R. China
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Fischer J, Mele L, Serier-Brault H, Nun P, Coeffard V. Controlling Photooxygenation with a Bifunctional Quinine-BODIPY Catalyst: towards Asymmetric Hydroxylation of β-Dicarbonyl Compounds. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900984] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jérôme Fischer
- Université de Nantes; CEISAM UMR CNRS 6230; 44000 Nantes France
| | - Lucas Mele
- Université de Nantes; CEISAM UMR CNRS 6230; 44000 Nantes France
| | - Hélène Serier-Brault
- Institut des Matériaux Jean Rouxel; Université de Nantes; CNRS; 2 rue de la Houssinière, BP 32229 44322 Nantes France
| | - Pierrick Nun
- Université de Nantes; CEISAM UMR CNRS 6230; 44000 Nantes France
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Ioannou GI, Montagnon T, Kalaitzakis D, Pergantis SA, Vassilikogiannakis G. One-Pot Synthesis of Diverse γ-Lactam Scaffolds Facilitated by a Nebulizer-Based Continuous Flow Photoreactor. CHEMPHOTOCHEM 2018; 2:860-864. [PMID: 30393758 PMCID: PMC6197048 DOI: 10.1002/cptc.201800068] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Indexed: 11/11/2022]
Abstract
The use of a modified prototype continuous flow reactor (CFR) as a pivotal part of a number of versatile singlet oxygen-mediated reaction sequences is presented herein. These sequences target rapid access to structural complexity and diversity. The prototype reactor achieves high conversions and productivities by attaining large specific surface areas for these biphasic reactions. In the reactor, the reaction solution is nebulized (using either oxygen or air) and the resulting aerosol is irradiated by an LED jacket that surrounds the Pyrex reaction chamber. The one pot procedures developed herein are, according to many different criteria, both highly efficient and green. The key common intermediates and the source of both the complexity and variety of the final products are N-acyl imminium ions (NAI; protonated N-acyl enamines). The initial substrates are simple and readily accessible furans and the diverse array of products is composed of different complex γ-lactams. Many of the products are of particular interest due to their close relationships to known biologically active molecules.
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Affiliation(s)
| | - Tamsyn Montagnon
- Department of ChemistryUniversity of CreteVasilika Vouton71003CreteGreece
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Sofiadis M, Sarris J, Montagnon T, Kalaitzakis D, Vassilikogiannakis G. Rapid Access to 3-Acyl-5-alkoxybutyrolactams Using Triplet and Singlet Oxygen. European J Org Chem 2018. [DOI: 10.1002/ejoc.201800832] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Manolis Sofiadis
- Department of Chemistry; University of Crete; Vasilika Vouton 71003 Iraklion Crete Greece
| | - John Sarris
- Department of Chemistry; University of Crete; Vasilika Vouton 71003 Iraklion Crete Greece
| | - Tamsyn Montagnon
- Department of Chemistry; University of Crete; Vasilika Vouton 71003 Iraklion Crete Greece
| | - Dimitris Kalaitzakis
- Department of Chemistry; University of Crete; Vasilika Vouton 71003 Iraklion Crete Greece
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10
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Mahida AK, Kale SB, Das U. Synthesis Route to Pyrrolones from α-Cyano α,β-Unsaturated Ketones and α-Isocyano Esters by Oxidative Dearomatization of 2-Aminofuran Intermediates. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701194] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Anil K. Mahida
- Division of Organic Chemistry; CSIR - National Chemical Laboratory; 411008 Pune India
- Academy of Scientific and Innovative Research (AcSIR); 110020 New Delhi India
| | - Someshwar B. Kale
- Division of Organic Chemistry; CSIR - National Chemical Laboratory; 411008 Pune India
- Academy of Scientific and Innovative Research (AcSIR); 110020 New Delhi India
| | - Utpal Das
- Division of Organic Chemistry; CSIR - National Chemical Laboratory; 411008 Pune India
- Academy of Scientific and Innovative Research (AcSIR); 110020 New Delhi India
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