1
|
Moge B, Schindler B, Yeni O, Compagnon I. Fucose Migration Pathways Identified Using Infrared Spectroscopy. Angew Chem Int Ed Engl 2023; 62:e202300538. [PMID: 36825496 DOI: 10.1002/anie.202300538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 02/23/2023] [Accepted: 02/23/2023] [Indexed: 02/25/2023]
Abstract
Fucose is a ubiquitous monosaccharide associated to major classes of glycans. A main obstacle to the sequencing of fucosylated glycans is the migration of fucose, which leads to misinterpretations in mass spectrometry analysis. Here, using ion vibrational spectroscopy, we resolve the structure of fucosylated fragments of Lewis and blood group H antigen trisaccharides and we unveil the position and linkage of the fucose after migration. Our findings demonstrate that the structure of fragment ions resulting from fucose migration can be characterized. Additionally, we report a new type of fucose migration, which does not feature any change of mass and therefore had not been previously reported: it consists of a local migration where the fucose changes its position remaining on the initial residue. Our approach allows the characterization of glycans, an essential step to interpret glycomics data, as well as to understand underlying processes at play in mass spectrometry.
Collapse
Affiliation(s)
- Baptiste Moge
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622, Villeurbanne, France
| | - Baptiste Schindler
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622, Villeurbanne, France
| | - Oznur Yeni
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622, Villeurbanne, France
| | - Isabelle Compagnon
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622, Villeurbanne, France
| |
Collapse
|
2
|
Greis K, Kirschbaum C, Taccone MI, Götze M, Gewinner S, Schöllkopf W, Meijer G, von Helden G, Pagel K. Studying the Key Intermediate of RNA Autohydrolysis by Cryogenic Gas-Phase Infrared Spectroscopy. Angew Chem Int Ed Engl 2022; 61:e202115481. [PMID: 35231141 PMCID: PMC9314874 DOI: 10.1002/anie.202115481] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Indexed: 11/09/2022]
Abstract
Over the course of the COVID-19 pandemic, mRNA-based vaccines have gained tremendous importance. The development and analysis of modified RNA molecules benefit from advanced mass spectrometry and require sufficient understanding of fragmentation processes. Analogous to the degradation of RNA in solution by autohydrolysis, backbone cleavage of RNA strands was equally observed in the gas phase; however, the fragmentation mechanism remained elusive. In this work, autohydrolysis-like intermediates were generated from isolated RNA dinucleotides in the gas phase and investigated using cryogenic infrared spectroscopy in helium nanodroplets. Data from both experiment and density functional theory provide evidence for the formation of a five-membered cyclic phosphate intermediate and rule out linear or six-membered structures. Furthermore, the experiments show that another prominent condensed-phase reaction of RNA nucleotides can be induced in the gas phase: the tautomerization of cytosine. Both observed reactions are therefore highly universal and intrinsic properties of the investigated molecules.
Collapse
Affiliation(s)
- Kim Greis
- Institut für Chemie und BiochemieFreie Universität BerlinArnimallee 2214195BerlinGermany
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Carla Kirschbaum
- Institut für Chemie und BiochemieFreie Universität BerlinArnimallee 2214195BerlinGermany
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Martín I. Taccone
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Michael Götze
- Institut für Chemie und BiochemieFreie Universität BerlinArnimallee 2214195BerlinGermany
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Sandy Gewinner
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Wieland Schöllkopf
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Kevin Pagel
- Institut für Chemie und BiochemieFreie Universität BerlinArnimallee 2214195BerlinGermany
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| |
Collapse
|
3
|
Greis K, Kirschbaum C, Taccone MI, Götze M, Gewinner S, Schöllkopf W, Meijer G, Helden G, Pagel K. Untersuchung des reaktiven Intermediats der RNA Autohydrolyse mittels kryogener Infrarotspektroskopie in der Gasphase. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202115481] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kim Greis
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Carla Kirschbaum
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Martín I. Taccone
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Michael Götze
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Sandy Gewinner
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Wieland Schöllkopf
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Gert Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Kevin Pagel
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| |
Collapse
|
4
|
Liou SW, Fang JL, Lin HW, Tsai TW, Huang HH, Liang CY, Yang CR, Wei GT, Yu CC. Effective Separation of Human Milk Glycosides using Carbon Dioxide Supercritical Fluid Chromatography. Chem Asian J 2021; 16:492-497. [PMID: 33417290 DOI: 10.1002/asia.202001404] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Revised: 12/30/2020] [Indexed: 01/13/2023]
Abstract
Carbohydrate purification remains problematic due to the intrinsic diversity of structural isomers present in nature. Although liquid chromatography-based techniques are suitable for analyzing or preparing most glycan structures acquired either from natural sources or through chemical or enzymatic synthesis, the separation of regioisomers or linkage isomers with a clear resolution remains challenging. Herein, a carbon dioxide supercritical fluid chromatography (SFC) method was devised to resolve 18 human milk glycosides: oligomers (disaccharides to hexasaccharides), fucosylated regioisomers (lacto-N-fucopentaose I, III, and V; lacto-N-neofucopentaose V; lacto-N-difucohexaose III; blood group H1 antigen; and TF-LNnT), and connectivity isomers (lacto-N-tetraose/lacto-N-neotetraose and para-lacto-N-hexaose/para-lacto-N-neohexaose/type-1 hexasaccharide). The analysis of these glycosides represents a major limitation associated with conventional carbohydrate analysis. The unprecedented resolution achieved by the SFC method indicates the suitability of this key technology for revealing complex human milk glycomes.
Collapse
Affiliation(s)
- Shih-Wei Liou
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Jia-Lin Fang
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Hung-Wei Lin
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Teng-Wei Tsai
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Hsin-Hui Huang
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Chin-Yu Liang
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Cheng-Ruel Yang
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Guor-Tzo Wei
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| | - Ching-Ching Yu
- Department of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chiayi, 62102, Taiwan
| |
Collapse
|
5
|
Kirschbaum C, Saied EM, Greis K, Mucha E, Gewinner S, Schöllkopf W, Meijer G, Helden G, Poad BLJ, Blanksby SJ, Arenz C, Pagel K. Unterscheidung von isomeren Sphingolipiden mittels kryogener Infrarotspektroskopie. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202002459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Carla Kirschbaum
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Essa M. Saied
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Deutschland
- Chemistry Department Faculty of Science Suez Canal University Ismailia Ägypten
| | - Kim Greis
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Eike Mucha
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Sandy Gewinner
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Wieland Schöllkopf
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Gerard Meijer
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Gert Helden
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Berwyck L. J. Poad
- Central Analytical Research Facility Institute for Future Environments Queensland University of Technology Brisbane QLD 4000 Australien
| | - Stephen J. Blanksby
- Central Analytical Research Facility Institute for Future Environments Queensland University of Technology Brisbane QLD 4000 Australien
| | - Christoph Arenz
- Institut für Chemie Humboldt-Universität zu Berlin Brook-Taylor-Straße 2 12489 Berlin Deutschland
| | - Kevin Pagel
- Institut für Chemie und Biochemie Freie Universität Berlin Arnimallee 22 14195 Berlin Deutschland
- Abteilung Molekülphysik Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| |
Collapse
|
6
|
Kirschbaum C, Saied EM, Greis K, Mucha E, Gewinner S, Schöllkopf W, Meijer G, von Helden G, Poad BLJ, Blanksby SJ, Arenz C, Pagel K. Resolving Sphingolipid Isomers Using Cryogenic Infrared Spectroscopy. Angew Chem Int Ed Engl 2020; 59:13638-13642. [PMID: 32291895 PMCID: PMC7496694 DOI: 10.1002/anie.202002459] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 03/23/2020] [Indexed: 12/21/2022]
Abstract
1‐Deoxysphingolipids are a recently described class of sphingolipids that have been shown to be associated with several disease states including diabetic and hereditary neuropathy. The identification and characterization of 1‐deoxysphingolipids and their metabolites is therefore highly important. However, exact structure determination requires a combination of sophisticated analytical techniques due to the presence of various isomers, such as ketone/alkenol isomers, carbon–carbon double‐bond (C=C) isomers and hydroxylation regioisomers. Here we demonstrate that cryogenic gas‐phase infrared (IR) spectroscopy of ionized 1‐deoxysphingolipids enables the identification and differentiation of isomers by their unique spectroscopic fingerprints. In particular, C=C bond positions and stereochemical configurations can be distinguished by specific interactions between the charged amine and the double bond. The results demonstrate the power of gas‐phase IR spectroscopy to overcome the challenge of isomer resolution in conventional mass spectrometry and pave the way for deeper analysis of the lipidome.
Collapse
Affiliation(s)
- Carla Kirschbaum
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany.,Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Essa M Saied
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489, Berlin, Germany.,Chemistry Department, Faculty of Science, Suez Canal University, Ismailia, Egypt
| | - Kim Greis
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany.,Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Eike Mucha
- Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Sandy Gewinner
- Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Wieland Schöllkopf
- Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Gerard Meijer
- Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Gert von Helden
- Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Berwyck L J Poad
- Central Analytical Research Facility, Institute for Future Environments, Queensland University of Technology, Brisbane, QLD, 4000, Australia
| | - Stephen J Blanksby
- Central Analytical Research Facility, Institute for Future Environments, Queensland University of Technology, Brisbane, QLD, 4000, Australia
| | - Christoph Arenz
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489, Berlin, Germany
| | - Kevin Pagel
- Institut für Chemie und Biochemie, Freie Universität Berlin, Arnimallee 22, 14195, Berlin, Germany.,Abteilung Molekülphysik, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| |
Collapse
|
7
|
Marianski M, Mucha E, Greis K, Moon S, Pardo A, Kirschbaum C, Thomas DA, Meijer G, von Helden G, Gilmore K, Seeberger PH, Pagel K. Remote Participation during Glycosylation Reactions of Galactose Building Blocks: Direct Evidence from Cryogenic Vibrational Spectroscopy. Angew Chem Int Ed Engl 2020; 59:6166-6171. [PMID: 31944510 PMCID: PMC7187407 DOI: 10.1002/anie.201916245] [Citation(s) in RCA: 61] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Indexed: 12/19/2022]
Abstract
The stereoselective formation of 1,2-cis-glycosidic bonds is challenging. However, 1,2-cis-selectivity can be induced by remote participation of C4 or C6 ester groups. Reactions involving remote participation are believed to proceed via a key ionic intermediate, the glycosyl cation. Although mechanistic pathways were postulated many years ago, the structure of the reaction intermediates remained elusive owing to their short-lived nature. Herein, we unravel the structure of glycosyl cations involved in remote participation reactions via cryogenic vibrational spectroscopy and first principles theory. Acetyl groups at C4 ensure α-selective galactosylations by forming a covalent bond to the anomeric carbon in dioxolenium-type ions. Unexpectedly, also benzyl ether protecting groups can engage in remote participation and promote the stereoselective formation of 1,2-cis-glycosidic bonds.
Collapse
Affiliation(s)
- Mateusz Marianski
- Department of Chemistry and BiochemistryHunter College695 Park Ave10065New YorkNYUSA
- The Ph.D. Program in ChemistryThe Graduate Center of the City University of New York365 5th AveNew YorkNY10016USA
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Kim Greis
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
- Institut für Chemie und BiochemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Sooyeon Moon
- Max-Planck-Institut für Kolloid und GrenzflächenforschungAm Mühlenberg 114476PotsdamGermany
- Institut für Chemie und BiochemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Alonso Pardo
- Max-Planck-Institut für Kolloid und GrenzflächenforschungAm Mühlenberg 114476PotsdamGermany
- Institut für Chemie und BiochemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Carla Kirschbaum
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
- Institut für Chemie und BiochemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
| | - Kerry Gilmore
- Max-Planck-Institut für Kolloid und GrenzflächenforschungAm Mühlenberg 114476PotsdamGermany
| | - Peter H. Seeberger
- Max-Planck-Institut für Kolloid und GrenzflächenforschungAm Mühlenberg 114476PotsdamGermany
- Institut für Chemie und BiochemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| | - Kevin Pagel
- Fritz-Haber-Institut der Max-Planck-GesellschaftFaradayweg 4–614195BerlinGermany
- Institut für Chemie und BiochemieFreie Universität BerlinTakustrasse 314195BerlinGermany
| |
Collapse
|
8
|
Marianski M, Mucha E, Greis K, Moon S, Pardo A, Kirschbaum C, Thomas DA, Meijer G, Helden G, Gilmore K, Seeberger PH, Pagel K. Fernpartizipation in Glykosylierungen von Galaktose‐Bausteinen: Direktnachweis durch kryogene Schwingungsspektroskopie. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201916245] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Mateusz Marianski
- Department of Chemistry and BiochemistryHunter College 695 Park Ave 10065 New York NY USA
- The Ph.D. Program in ChemistryThe Graduate Center of the City University of New York 365 5th Ave New York NY 10016 USA
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Kim Greis
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
- Institut für Chemie und BiochemieFreie Universität Berlin Takustraße 3 14195 Berlin Deutschland
| | - Sooyeon Moon
- Max-Planck-Institut für Kolloid und Grenzflächenforschung Am Mühlenberg 1 14476 Potsdam Deutschland
- Institut für Chemie und BiochemieFreie Universität Berlin Takustraße 3 14195 Berlin Deutschland
| | - Alonso Pardo
- Max-Planck-Institut für Kolloid und Grenzflächenforschung Am Mühlenberg 1 14476 Potsdam Deutschland
- Institut für Chemie und BiochemieFreie Universität Berlin Takustraße 3 14195 Berlin Deutschland
| | - Carla Kirschbaum
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
- Institut für Chemie und BiochemieFreie Universität Berlin Takustraße 3 14195 Berlin Deutschland
| | - Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Gert Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
| | - Kerry Gilmore
- Max-Planck-Institut für Kolloid und Grenzflächenforschung Am Mühlenberg 1 14476 Potsdam Deutschland
| | - Peter H. Seeberger
- Max-Planck-Institut für Kolloid und Grenzflächenforschung Am Mühlenberg 1 14476 Potsdam Deutschland
- Institut für Chemie und BiochemieFreie Universität Berlin Takustraße 3 14195 Berlin Deutschland
| | - Kevin Pagel
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Deutschland
- Institut für Chemie und BiochemieFreie Universität Berlin Takustraße 3 14195 Berlin Deutschland
| |
Collapse
|
9
|
Tsai S, Liew CY, Hsu C, Huang S, Weng W, Kuo Y, Ni C. Automatic Full Glycan Structural Determination through Logically Derived Sequence Tandem Mass Spectrometry. Chembiochem 2019; 20:2351-2359. [DOI: 10.1002/cbic.201900228] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Shang‐Ting Tsai
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
| | - Chia Yen Liew
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
- Molecular Science and Technology International Graduate ProgramAcademia Sinica and National University Taipei 10617 Taiwan
| | - Chen Hsu
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
| | - Shih‐Pei Huang
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
| | - Wei‐Chien Weng
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
| | - Yu‐Hsiang Kuo
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
| | - Chi‐Kung Ni
- Institute of Atomic and Molecular SciencesAcademia Sinica P. O. Box 23-166 Taipei 10617 Taiwan
- Department of ChemistryNational Tsing Hua University Hsinchu 30013 Taiwan
| |
Collapse
|
10
|
Saparbaev E, Kopysov V, Yamaletdinov R, Pereverzev AY, Boyarkin OV. Interplay of H‐Bonds with Aromatics in Isolated Complexes Identifies Isomeric Carbohydrates. Angew Chem Int Ed Engl 2019; 58:7346-7350. [DOI: 10.1002/anie.201902377] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 03/20/2019] [Indexed: 02/06/2023]
Affiliation(s)
- Erik Saparbaev
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Vladimir Kopysov
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Ruslan Yamaletdinov
- Nikolaev Institute of Inorganic Chemistry Novosibirsk 630090 Russian Federation
| | - Aleksandr Y. Pereverzev
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Oleg V. Boyarkin
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| |
Collapse
|
11
|
Saparbaev E, Kopysov V, Yamaletdinov R, Pereverzev AY, Boyarkin OV. Interplay of H‐Bonds with Aromatics in Isolated Complexes Identifies Isomeric Carbohydrates. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902377] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Erik Saparbaev
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Vladimir Kopysov
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Ruslan Yamaletdinov
- Nikolaev Institute of Inorganic Chemistry Novosibirsk 630090 Russian Federation
| | - Aleksandr Y. Pereverzev
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| | - Oleg V. Boyarkin
- Laboratoire de Chimie Physique MoléculaireÉcole Polytechnique Fédérale de Lausanne 1015 Lausanne Switzerland
| |
Collapse
|
12
|
Thomas DA, Marianski M, Mucha E, Meijer G, Johnson MA, von Helden G. Ground‐State Structure of the Proton‐Bound Formate Dimer by Cold‐Ion Infrared Action Spectroscopy. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201805436] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mark A. Johnson
- Sterling Chemistry Laboratory Yale University 225 Prospect Street New Haven CT 06520 USA
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| |
Collapse
|
13
|
Thomas DA, Marianski M, Mucha E, Meijer G, Johnson MA, von Helden G. Ground‐State Structure of the Proton‐Bound Formate Dimer by Cold‐Ion Infrared Action Spectroscopy. Angew Chem Int Ed Engl 2018; 57:10615-10619. [DOI: 10.1002/anie.201805436] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| | - Mark A. Johnson
- Sterling Chemistry Laboratory Yale University 225 Prospect Street New Haven CT 06520 USA
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft Faradayweg 4–6 14195 Berlin Germany
| |
Collapse
|
14
|
Mucha E, Lettow M, Marianski M, Thomas DA, Struwe WB, Harvey DJ, Meijer G, Seeberger PH, von Helden G, Pagel K. Fucose-Migration in intakten protonierten Glykan-Ionen - ein universelles Phänomen in der Massenspektrometrie. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201801418] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
- Institut für Chemie und Biochemie, der; Freien Universität Berlin; Takustraße 3 14195 Berlin Deutschland
| | - Maike Lettow
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
- Institut für Chemie und Biochemie, der; Freien Universität Berlin; Takustraße 3 14195 Berlin Deutschland
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
| | - Daniel A. Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
| | - Weston B. Struwe
- Oxford Glycobiology Institute; Department of Biochemistry; University of Oxford; Großbritannien
| | - David J. Harvey
- Target Discovery Institute; Nuffield Department of Medicine; University of Oxford; Großbritannien
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
| | - Peter H. Seeberger
- Max-Planck-Institut für Kolloid- und Grenzflächenforschung; Potsdam Deutschland
- Institut für Chemie und Biochemie; der Freien Universität Berlin; Deutschland
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
| | - Kevin Pagel
- Fritz-Haber-Institut der Max-Planck-Gesellschaft; Faradayweg 4-6 14195 Berlin Deutschland
- Institut für Chemie und Biochemie, der; Freien Universität Berlin; Takustraße 3 14195 Berlin Deutschland
| |
Collapse
|
15
|
Mucha E, Lettow M, Marianski M, Thomas DA, Struwe WB, Harvey DJ, Meijer G, Seeberger PH, von Helden G, Pagel K. Fucose Migration in Intact Protonated Glycan Ions: A Universal Phenomenon in Mass Spectrometry. Angew Chem Int Ed Engl 2018; 57:7440-7443. [PMID: 29688603 DOI: 10.1002/anie.201801418] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Revised: 03/23/2018] [Indexed: 11/10/2022]
Abstract
Fucose is an essential deoxysugar that is found in a wide range of biologically relevant glycans and glycoconjugates. A recurring problem in mass spectrometric analyses of fucosylated glycans is the intramolecular migration of fucose units, which can lead to erroneous sequence assignments. This migration reaction is typically assigned to activation during collision-induced dissociation (CID) in tandem mass spectrometry (MS). In this work, we utilized cold-ion spectroscopy and show for the first time that fucose migration is not limited to fragments obtained in tandem MS and can also be observed in intact glycan ions. This observation suggests a possible low-energy barrier for this transfer reaction and generalizes fucose migration to an issue that may universally occur in any type of mass spectrometry experiment.
Collapse
Affiliation(s)
- Eike Mucha
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany.,Institut für Chemie und Biochemie, der Freien Universität Berlin, Takustraße 3, 14195, Berlin, Germany
| | - Maike Lettow
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany.,Institut für Chemie und Biochemie, der Freien Universität Berlin, Takustraße 3, 14195, Berlin, Germany
| | - Mateusz Marianski
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Daniel A Thomas
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Weston B Struwe
- Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK
| | - David J Harvey
- Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Roosevelt Drive, Oxford, OX3 7FZ, UK
| | - Gerard Meijer
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Peter H Seeberger
- Max-Planck-Institut für Kolloid- und Grenzflächenforschung, Am Mühlenberg 1, 14476, Potsdam, Germany.,Institut für Chemie und Biochemie, der Freien Universität Berlin, Arnimallee 22, 14195, Berlin, Germany
| | - Gert von Helden
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany
| | - Kevin Pagel
- Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195, Berlin, Germany.,Institut für Chemie und Biochemie, der Freien Universität Berlin, Takustraße 3, 14195, Berlin, Germany
| |
Collapse
|