1
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Zigon N, Duplan V, Wada N, Fujita M. Crystalline Sponge Method: X‐ray Structure Analysis of Small Molecules by Post‐Orientation within Porous Crystals—Principle and Proof‐of‐Concept Studies. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202106265] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Nicolas Zigon
- Department of Applied Chemistry Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Vincent Duplan
- Department of Applied Chemistry Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Naoki Wada
- Department of Applied Chemistry Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Makoto Fujita
- Department of Applied Chemistry Graduate School of Engineering The University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113-8656 Japan
- Division of Advanced Molecular Science Institute for Molecular Science (IMS) 5-1 Higashiyama Myodaiji Okazaki Aichi 444-8787 Japan
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2
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Taniguchi Y, Kikuchi T, Sato S, Fujita M. Comprehensive Structural Analysis of the Bitter Components in Beer by the HPLC-Assisted Crystalline Sponge Method. Chemistry 2021; 28:e202103339. [PMID: 34755407 DOI: 10.1002/chem.202103339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Indexed: 11/10/2022]
Abstract
Trans-iso-α-acid is one of the main contributors to the bitter taste of fresh beer and is known to transform into various derivatives during beer aging. However, structural characterization of the derivatives has been a challenging task because of the formation of too many components. Herein, we report that most of the transformation products of trans-iso-α-acid, isolated in this study in only small quantities by HPLC, can be structurally analyzed with the crystalline sponge method. Thirteen compounds, including eight that were previously unreported, have been successfully isolated and analyzed with complete assignment of their absolute configuration. This provides an improved understanding of the chemical transformations that occur during beer aging.
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Affiliation(s)
- Yoshimasa Taniguchi
- Kirin Central Research Institute, Research & Development Division, Kirin Holdings Company, Ltd., 26-1, Muraoka-Higashi 2-chome, Fujisawa, Kanagawa, 251-8555, Japan
| | - Takashi Kikuchi
- Rigaku Corporation, 3-9-12 Matsubara-cho, Akishima-shi, Tokyo, 196-8666, Japan
| | - Sota Sato
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.,Integrated Molecular Structure Analysis Laboratory Social Cooperation Program, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Makoto Fujita
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.,Integrated Molecular Structure Analysis Laboratory Social Cooperation Program, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.,Division of Advanced Molecular Science, Institute for Molecular Science (IMS), National Institutes of Natural Sciences, 5-1 Higashiyama, Myodaiji-cho, Okazaki, Aichi, 444-8787, Japan
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3
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Verma G, Mehta R, Kumar S, Ma S. Metal‐Organic Frameworks as a New Platform for Enantioselective Separations. Isr J Chem 2021. [DOI: 10.1002/ijch.202100073] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Gaurav Verma
- Department of Chemistry University of North Texas 1508 W Mulberry St Denton, TX 76201 USA
| | - Ruhi Mehta
- Department of Chemistry Multani Mal Modi College Patiala 147001 Punjab India
| | - Sanjay Kumar
- Department of Chemistry Multani Mal Modi College Patiala 147001 Punjab India
| | - Shengqian Ma
- Department of Chemistry University of North Texas 1508 W Mulberry St Denton, TX 76201 USA
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4
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Rosenberger L, von Essen C, Khutia A, Kühn C, Georgi K, Hirsch AKH, Hartmann RW, Badolo L. Crystalline sponge affinity screening: A fast tool for soaking condition optimization without the need of X-ray diffraction analysis. Eur J Pharm Sci 2021; 164:105884. [PMID: 34161782 DOI: 10.1016/j.ejps.2021.105884] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 04/07/2021] [Accepted: 05/14/2021] [Indexed: 11/28/2022]
Abstract
Structural elucidation of small molecules only available in low quantity (nanogram) is one of the big advantages of the crystalline sponge method. The optimization of various soaking parameters is crucial for effective analyte absorption and repetitive positioning in the pores of the crystal. Time-consuming X-ray diffraction measurements are necessary for data collection and confirmation of successful guest inclusion. In this work, we report a screening method to select optimal soaking conditions without the need of single-crystal X-ray diffraction analysis for individual compounds and mixtures. 14 substances were chosen as test compounds. Parallel guest soaking of individual compounds and mixtures was conducted using various soaking conditions. After evaporation of solvent, excessive material was removed, and guest molecules released through dissolution of the framework. Liquid chromatography-tandem mass spectrometry allowed the estimation of analyte trapped in the pores and the selection of optimal soaking condition dependent on the highest amount of analyte to crystal size (affinity factor). The tool allowed subsequent crystallographic analysis of ten compounds with minimal experiment time. Additionally, a study to examine the lower limit of detection of the crystalline sponge method was conducted. Determination of two target analytes was possible using only 5 ng of sample. Our study shows the potential of an affinity screening to prioritize soaking parameters by estimation of the guest concentration in a single crystal for one or multiple target compounds within a short period of time.
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Affiliation(s)
- Lara Rosenberger
- Discovery and Development Technologies (DDTech), Merck KGaA, Frankfurter Strasse 250, 64293 Darmstadt, Germany; Department of Drug Design and Optimization (DDOP), Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus E8.1, 66123 Saarbrücken, Germany; Department of Pharmacy, Saarland University, Campus E8.1, 66123 Saarbrücken, Germany
| | - Carolina von Essen
- Innovation Center, Merck KGaA, Frankfurter Strasse 250, 64293 Darmstadt, Germany
| | - Anupam Khutia
- Innovation Center, Merck KGaA, Frankfurter Strasse 250, 64293 Darmstadt, Germany
| | - Clemens Kühn
- Innovation Center, Merck KGaA, Frankfurter Strasse 250, 64293 Darmstadt, Germany.
| | - Katrin Georgi
- Discovery and Development Technologies (DDTech), Merck KGaA, Frankfurter Strasse 250, 64293 Darmstadt, Germany
| | - Anna K H Hirsch
- Department of Drug Design and Optimization (DDOP), Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus E8.1, 66123 Saarbrücken, Germany; Department of Pharmacy, Saarland University, Campus E8.1, 66123 Saarbrücken, Germany
| | - Rolf W Hartmann
- Department of Drug Design and Optimization (DDOP), Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS) - Helmholtz Centre for Infection Research (HZI), Campus E8.1, 66123 Saarbrücken, Germany; Department of Pharmacy, Saarland University, Campus E8.1, 66123 Saarbrücken, Germany
| | - Lassina Badolo
- Discovery and Development Technologies (DDTech), Merck KGaA, Frankfurter Strasse 250, 64293 Darmstadt, Germany
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5
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Zigon N, Duplan V, Wada N, Fujita M. Crystalline Sponge Method: X-ray Structure Analysis of Small Molecules by Post-Orientation within Porous Crystals-Principle and Proof-of-Concept Studies. Angew Chem Int Ed Engl 2021; 60:25204-25222. [PMID: 34109717 DOI: 10.1002/anie.202106265] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Indexed: 01/05/2023]
Abstract
This Review discusses, along with the historical background, the principles as well as proof-of-concept studies of the crystalline sponge (CS) method, a new single-crystal X-ray diffraction (SCXRD) method for the analysis of the structures of small molecules without sample crystallization. The method uses single-crystalline porous coordination networks (crystalline sponges) that can absorb small guest molecules within their pores. The absorbed guest molecules are ordered in the pores through molecular recognition and become observable by conventional SCXRD analysis. The complex {[(ZnI2 )3 (tpt)2 ]⋅x(solvent)}n (tpt=tris(4-pyridyl)-1,3,5-triazine) was first proposed as a crystalline sponge and has been most generally used. Crystalline sponges developed later are also discussed here. The principle of the CS method can be described as "post-crystallization" of the absorbed guest, whose ordering is templated by the pre-latticed cavities. The method has been widely applied to synthetic chemistry as well as natural product studies, for which proof-of-concept examples will be shown here.
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Affiliation(s)
- Nicolas Zigon
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Vincent Duplan
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Naoki Wada
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan
| | - Makoto Fujita
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.,Division of Advanced Molecular Science, Institute for Molecular Science (IMS), 5-1 Higashiyama Myodaiji, Okazaki, Aichi, 444-8787, Japan
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6
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Okur S, Qin P, Chandresh A, Li C, Zhang Z, Lemmer U, Heinke L. An Enantioselective e-Nose: An Array of Nanoporous Homochiral MOF Films for Stereospecific Sensing of Chiral Odors. Angew Chem Int Ed Engl 2021; 60:3566-3571. [PMID: 33156561 PMCID: PMC7898876 DOI: 10.1002/anie.202013227] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 11/02/2020] [Indexed: 11/24/2022]
Abstract
Chirality is essential in nature and often pivotal for biological information transfer, for example, via odor messenger molecules. While the human nose can distinguish the enantiomers of many chiral odors, the technical realization by an artificial sensor or an electronic nose, e-nose, remains a challenge. Herein, we present an array of six sensors coated with nanoporous metal-organic framework (MOF) films of different homochiral and achiral structures, working as an enantioselective e-nose. While the achiral-MOF-film sensors show identical responses for both isomers of one chiral odor molecule, the responses of the homochiral MOF films differ for different enantiomers. By machine learning algorithms, the combined array data allow the stereoselective identification of all compounds, here tested for five pairs of chiral odor molecules. We foresee the chiral-MOF-e-nose, able to enantioselectively detect and discriminate chiral odors, to be a powerful approach towards advanced odor sensing.
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Affiliation(s)
- Salih Okur
- Karlsruhe Institute of Technology (KIT)Light Technology Institute (LTI)Engesserstrasse 1376131KarlsruheGermany
| | - Peng Qin
- Karlsruhe Institute of Technology (KIT)Institute of Functional Interfaces (IFG)Hermann-von-Helmholtz-Platz 176344Eggenstein-LeopoldshafenGermany
| | - Abhinav Chandresh
- Karlsruhe Institute of Technology (KIT)Institute of Functional Interfaces (IFG)Hermann-von-Helmholtz-Platz 176344Eggenstein-LeopoldshafenGermany
| | - Chun Li
- Karlsruhe Institute of Technology (KIT)Institute of Functional Interfaces (IFG)Hermann-von-Helmholtz-Platz 176344Eggenstein-LeopoldshafenGermany
| | - Zejun Zhang
- Karlsruhe Institute of Technology (KIT)Institute of Functional Interfaces (IFG)Hermann-von-Helmholtz-Platz 176344Eggenstein-LeopoldshafenGermany
| | - Ulrich Lemmer
- Karlsruhe Institute of Technology (KIT)Light Technology Institute (LTI)Engesserstrasse 1376131KarlsruheGermany
- Karlsruhe Institute of Technology (KIT)Institute of Microstructure Technology (IMT)76128KarlsruheGermany
| | - Lars Heinke
- Karlsruhe Institute of Technology (KIT)Institute of Functional Interfaces (IFG)Hermann-von-Helmholtz-Platz 176344Eggenstein-LeopoldshafenGermany
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7
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Wu D, Zhou K, Tian J, Liu C, Tian J, Jiang F, Yuan D, Zhang J, Chen Q, Hong M. Induction of Chirality in a Metal–Organic Framework Built from Achiral Precursors. Angew Chem Int Ed Engl 2020; 60:3087-3094. [DOI: 10.1002/anie.202013885] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Indexed: 01/10/2023]
Affiliation(s)
- Dong Wu
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- Department of Chemistry University of Science and Technology of China Hefei Anhui 230026 China
| | - Kang Zhou
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Jindou Tian
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- Department of Chemistry University of Science and Technology of China Hefei Anhui 230026 China
| | - Caiping Liu
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Jiayue Tian
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- Henan Provincial Key Laboratory of Surface & Interface Science Zhengzhou University of Light Industry Zhengzhou 450001 China
| | - Feilong Jiang
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Daqiang Yuan
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Jian Zhang
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Qihui Chen
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Maochun Hong
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
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8
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Wu D, Zhou K, Tian J, Liu C, Tian J, Jiang F, Yuan D, Zhang J, Chen Q, Hong M. Induction of Chirality in a Metal–Organic Framework Built from Achiral Precursors. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202013885] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Dong Wu
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- Department of Chemistry University of Science and Technology of China Hefei Anhui 230026 China
| | - Kang Zhou
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Jindou Tian
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- Department of Chemistry University of Science and Technology of China Hefei Anhui 230026 China
| | - Caiping Liu
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Jiayue Tian
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- Henan Provincial Key Laboratory of Surface & Interface Science Zhengzhou University of Light Industry Zhengzhou 450001 China
| | - Feilong Jiang
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Daqiang Yuan
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Jian Zhang
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Qihui Chen
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Maochun Hong
- State Key Laboratory of Structure Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
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9
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Okur S, Qin P, Chandresh A, Li C, Zhang Z, Lemmer U, Heinke L. Eine enantioselektive elektronische Nase: Ein Array nanoporöser homochiraler MOF‐Filme zur stereospezifischen Erkennung chiraler Geruchsmoleküle. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202013227] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Salih Okur
- Karlsruhe Institute of Technology (KIT) Light Technology Institute (LTI) Engesserstraße 13 76131 Karlsruhe Deutschland
| | - Peng Qin
- Karlsruhe Institute of Technology (KIT) Institute of Functional Interfaces (IFG) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Deutschland
| | - Abhinav Chandresh
- Karlsruhe Institute of Technology (KIT) Institute of Functional Interfaces (IFG) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Deutschland
| | - Chun Li
- Karlsruhe Institute of Technology (KIT) Institute of Functional Interfaces (IFG) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Deutschland
| | - Zejun Zhang
- Karlsruhe Institute of Technology (KIT) Institute of Functional Interfaces (IFG) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Deutschland
| | - Ulrich Lemmer
- Karlsruhe Institute of Technology (KIT) Light Technology Institute (LTI) Engesserstraße 13 76131 Karlsruhe Deutschland
- Karlsruhe Institute of Technology (KIT) Institute of Microstructure Technology (IMT) 76128 Karlsruhe Deutschland
| | - Lars Heinke
- Karlsruhe Institute of Technology (KIT) Institute of Functional Interfaces (IFG) Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Deutschland
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