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Salazar Marcano DE, Chen JJ, Moussawi MA, Kalandia G, Anyushin AV, Parac-Vogt TN. Redox-active polyoxovanadates as cofactors in the development of functional protein assemblies. J Inorg Biochem 2024; 260:112687. [PMID: 39142056 DOI: 10.1016/j.jinorgbio.2024.112687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 07/29/2024] [Accepted: 07/30/2024] [Indexed: 08/16/2024]
Abstract
The interactions of polyoxovanadates (POVs) with proteins have increasingly attracted interest in recent years due to their potential biomedical applications. This is especially the case because of their redox and catalytic properties, which make them interesting for developing artificial metalloenzymes. Organic-inorganic hybrid hexavanadates in particular offer several advantages over all-inorganic POVs. However, they have been scarcely investigated in biological systems even though, as shown in this work, hybrid hexavanadates are highly stable in aqueous solutions up to relatively high pH. Therefore, a novel bis-biotinylated hexavanadate was synthesized and shown to selectively interact with two biotin-binding proteins, avidin and streptavidin. Bridging interactions between multiple proteins led to their self-assembly into supramolecular bio-inorganic hybrid systems that have potential as artificial enzymes with the hexavanadate core as a redox-active cofactor. Moreover, the structure and charge of the hexavanadate core were determined to enhance the binding affinity and slightly alter the secondary structure of the proteins, which affected the size and speed of formation of the assemblies. Hence, tuning the polyoxometalate (POM) core of hybrid POMs (HPOMs) with protein-binding ligands has been demonstrated to be a potential strategy for controlling the self-assembly process while also enabling the formation of novel POM-based biomaterials that could be of interest in biomedicine.
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Affiliation(s)
| | - Jieh-Jang Chen
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Mhamad Aly Moussawi
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Givi Kalandia
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
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2
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Salazar Marcano DE, Lentink S, Chen JJ, Anyushin AV, Moussawi MA, Bustos J, Van Meerbeek B, Nyman M, Parac-Vogt TN. Supramolecular Self-Assembly of Proteins Promoted by Hybrid Polyoxometalates. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2312009. [PMID: 38213017 DOI: 10.1002/smll.202312009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Indexed: 01/13/2024]
Abstract
Controlling the formation of supramolecular protein assemblies and endowing them with new properties that can lead to novel functional materials is an important but challenging task. In this work, a new hybrid polyoxometalate is designed to induce controlled intermolecular bridging between biotin-binding proteins. Such bridging interactions lead to the formation of supramolecular protein assemblies incorporating metal-oxo clusters that go from several nanometers in diameter up to the micron range. Insights into the self-assembly process and the nature of the resulting biohybrid materials are obtained by a combination of Small Angle X-ray Scattering (SAXS), Transmission Electron Microscopy (TEM), and Dynamic Light Scattering (DLS), along with fluorescence, UV-vis, and Circular Dichroism (CD) spectroscopy. The formation of hybrid supramolecular assemblies is determined to be driven by biotin binding to the protein and electrostatic interactions between the anionic metal-oxo cluster and the protein, both of which also influence the stability of the resulting assemblies. As a result, the rate of formation, size, and stability of the supramolecular assemblies can be tuned by controlling the electrostatic interactions between the cluster and the protein (e.g., through varying the ionic strength of the solution), thereby paving the way toward biomaterials with tunable assembly and disassembly properties.
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Affiliation(s)
| | - Sarah Lentink
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven, 3001, Belgium
| | - Jieh-Jang Chen
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven, 3001, Belgium
| | | | - Mhamad Aly Moussawi
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven, 3001, Belgium
| | - Jenna Bustos
- Department of Chemistry, Oregon State University, Corvallis, OR, 97331, USA
| | - Bart Van Meerbeek
- Department of Oral Health Sciences, BIOMAT & UZ Leuven, Dentistry, KU Leuven, Kapucijnenvoer 7, Leuven, 3000, Belgium
| | - May Nyman
- Department of Chemistry, Oregon State University, Corvallis, OR, 97331, USA
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3
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Inaba H, Shisaka Y, Ariyasu S, Sakakibara E, Ueda G, Aiba Y, Shimizu N, Sugimoto H, Shoji O. Heme-substituted protein assembly bridged by synthetic porphyrin: achieving controlled configuration while maintaining rotational freedom. RSC Adv 2024; 14:8829-8836. [PMID: 38495978 PMCID: PMC10941265 DOI: 10.1039/d4ra01042f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2024] [Accepted: 03/04/2024] [Indexed: 03/19/2024] Open
Abstract
The use of biological host-guest interactions, specifically the binding of hemoprotein to heme, has attracted significant research interest in the design of artificial protein assemblies. However, because of the inherent flexibility of the propionic acid group of heme, it is difficult to control the positioning and orientation of the protein unit and to construct well-ordered structures. Herein, we report a heme-substituted protein dimer composed of the native hemoprotein HasA, which accommodates a tetraphenylporphyrin bearing an additional metal coordination site. The specific binding of the tetraphenylporphyrin with an additional metal coordination site that protrudes in a fixed direction confines the configuration of the dimer structure to a defined bent form. The small-angle X-ray scattering profile shows the dimer structure with a bent form and suggests dynamic rotational behavior while keeping its bent-core structure, resembling a bevel gear. This unique dimer structure demonstrates that the design of heme-substituted protein assemblies can be expanded to protein assemblies while maintaining the rotational freedom of the individual protein units.
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Affiliation(s)
- Hiroaki Inaba
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
| | - Yuma Shisaka
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
| | - Shinya Ariyasu
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
| | - Erika Sakakibara
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
| | - Garyo Ueda
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
| | - Yuichiro Aiba
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
| | - Nobutaka Shimizu
- Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK) 1-1 Oho Tsukuba Ibaraki 305-0801 Japan
- RIKEN SPring-8 Center 1-1-1 Kouto Sayo Hyogo 679-5148 Japan
| | | | - Osami Shoji
- Department of Chemistry, School of Science, Nagoya University Furo-cho, Chikusa-ku Nagoya Aichi 464-0802 Japan
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4
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Romero-Romero ML, Garcia-Seisdedos H. Agglomeration: when folded proteins clump together. Biophys Rev 2023; 15:1987-2003. [PMID: 38192350 PMCID: PMC10771401 DOI: 10.1007/s12551-023-01172-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 11/25/2023] [Indexed: 01/10/2024] Open
Abstract
Protein self-association is a widespread phenomenon that results in the formation of multimeric protein structures with critical roles in cellular processes. Protein self-association can lead to finite protein complexes or open-ended, and potentially, infinite structures. This review explores the concept of protein agglomeration, a process that results from the infinite self-assembly of folded proteins. We highlight its differences from other better-described processes with similar macroscopic features, such as aggregation and liquid-liquid phase separation. We review the sequence, structural, and biophysical factors influencing protein agglomeration. Lastly, we briefly discuss the implications of agglomeration in evolution, disease, and aging. Overall, this review highlights the need to study protein agglomeration for a better understanding of cellular processes.
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Affiliation(s)
- M. L. Romero-Romero
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Center for Systems Biology, Dresden, Germany
| | - H. Garcia-Seisdedos
- Department of Structural and Molecular Biology, Institut de Biologia Molecular de Barcelona (IBMB-CSIC), Barcelona, Spain
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5
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Alberstein RG, Prelesnik JL, Nakouzi E, Zhang S, De Yoreo JJ, Pfaendtner J, Tezcan FA, Mundy CJ. Discrete Orientations of Interfacial Waters Direct Crystallization of Mica-Binding Proteins. J Phys Chem Lett 2023; 14:80-87. [PMID: 36573690 DOI: 10.1021/acs.jpclett.2c02948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Understanding the basis of templated molecular assembly on a solid surface requires a fundamental comprehension of both short- and long-range aqueous response to the surface under a variety of solution conditions. Herein we provide a detailed picture of how the molecular-scale response to different mica surfaces yields distinct solvent orientations that produce quasi-static directional potentials onto which macromolecules can adsorb. We connect this directionality to observed (a)symmetric epitaxial alignment of designed proteins onto these surfaces, corroborate our findings with 3D atomic force microscopy experiments, and identify slight differences in surface structure as the origin of this effect. Our work provides a detailed picture of the intrinsic electrolyte response in the vicinity of mineral interfaces, with clear predictions for experiment, and highlights the role of solvent on the predictive assembly of hierarchical materials on mineral surfaces.
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Affiliation(s)
- Robert G Alberstein
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
| | - Jesse L Prelesnik
- Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, United States
| | - Elias Nakouzi
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Shuai Zhang
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
- Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195, United States
| | - James J De Yoreo
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99354, United States
- Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195, United States
| | - Jim Pfaendtner
- Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, United States
- Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195, United States
| | - F Akif Tezcan
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, United States
- Materials Science and Engineering, University of California, San Diego, La Jolla, California 92093, United States
| | - Christopher J Mundy
- Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, United States
- Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195, United States
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6
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Oohora K, Hayashi T. Preparation of Cage-Like Micellar Assemblies of Engineered Hemoproteins. Methods Mol Biol 2023; 2671:95-108. [PMID: 37308640 DOI: 10.1007/978-1-0716-3222-2_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Natural protein assemblies have encouraged scientists to create large supramolecular systems consisting of various protein motifs. In the case of hemoproteins containing heme as a cofactor, several approaches have been reported to form artificial assemblies with various structures such as fibers, sheets, networks, and cages. This chapter describes the design, preparation, and characterization of cage-like micellar assemblies for chemically modified hemoproteins including hydrophilic protein units attached to hydrophobic molecules. Detailed procedures are described for constructing specific systems using cytochrome b562 and hexameric tyrosine-coordinated heme protein as hemoprotein units with heme-azobenzene conjugate and poly-N-isopropylacrylamide as attached molecules.
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Affiliation(s)
- Koji Oohora
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Yamadaoka, Suita, Japan.
| | - Takashi Hayashi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Yamadaoka, Suita, Japan.
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7
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Bhullar AS, Zhang L, Burns N, Cheng X, Guo P. Voltage controlled shutter regulates channel size and motion direction of protein aperture as durable nano-electric rectifier-----An opinion in biomimetic nanoaperture. Biomaterials 2022; 291:121863. [PMID: 36356474 PMCID: PMC9766157 DOI: 10.1016/j.biomaterials.2022.121863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 09/30/2022] [Accepted: 10/15/2022] [Indexed: 11/09/2022]
Abstract
In optical devices such as camera or microscope, an aperture is used to regulate light intensity for imaging. Here we report the discovery and construction of a durable bio-aperture at nanometerscale that can regulate current at the pico-ampere scale. The nano-aperture is made of 12 identical protein subunits that form a 3.6-nm channel with a shutter and "one-way traffic" property. This shutter responds to electrical potential differences across the aperture and can be turned off for double stranded DNA translocation. This voltage enables directional control, and three-step regulation for opening and closing. The nano-aperture was constructed in vitro and purified into homogeneity. The aperture was stable at pH2-12, and a temperature of -85C-60C. When an electrical potential was held, three reproducible discrete steps of current flowing through the channel were recorded. Each step reduced 32% of the channel dimension evident by the reduction of the measured current flowing through the aperture. The current change is due to the change of the resistance of aperture size. The transition between these three distinct steps and the direction of the current was controlled via the polarity of the voltage applied across the aperture. When the C-terminal of the aperture was fused to an antigen, the antibody and antigen interaction resulted in a 32% reduction of the channel size. This phenomenon was used for disease diagnosis since the incubation of the antigen-nano-aperture with a specific cancer antibody resulted in a change of 32% of current. The purified truncated cone-shape aperture automatically self-assembled efficiently into a sheet of the tetragonal array via head-to-tail self-interaction. The nano-aperture discovery with a controllable shutter, discrete-step current regulation, formation of tetragonal sheet, and one-way current traffic provides a nanoscale electrical circuit rectifier for nanodevices and disease diagnosis.
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Affiliation(s)
- Abhjeet S Bhullar
- Center for RNA Nanobiotechnology and Nanomedicine; College of Pharmacy; College of Medicine; Dorothy M. Davis Heart and Lung Research Institute; And Comprehensive Cancer Center. The Ohio State University, Columbus, OH, 43210, USA; Biophysics Graduate Program, The Ohio State University, Columbus, OH, 43210, USA
| | - Long Zhang
- Center for RNA Nanobiotechnology and Nanomedicine; College of Pharmacy; College of Medicine; Dorothy M. Davis Heart and Lung Research Institute; And Comprehensive Cancer Center. The Ohio State University, Columbus, OH, 43210, USA
| | - Nicolas Burns
- Center for RNA Nanobiotechnology and Nanomedicine; College of Pharmacy; College of Medicine; Dorothy M. Davis Heart and Lung Research Institute; And Comprehensive Cancer Center. The Ohio State University, Columbus, OH, 43210, USA
| | - Xiaolin Cheng
- Biophysics Graduate Program, The Ohio State University, Columbus, OH, 43210, USA; College of Pharmacy, Translational Data Analytics Institute, The Ohio State University, Columbus, OH, 43210, USA
| | - Peixuan Guo
- Center for RNA Nanobiotechnology and Nanomedicine; College of Pharmacy; College of Medicine; Dorothy M. Davis Heart and Lung Research Institute; And Comprehensive Cancer Center. The Ohio State University, Columbus, OH, 43210, USA; Biophysics Graduate Program, The Ohio State University, Columbus, OH, 43210, USA; College of Pharmacy, Translational Data Analytics Institute, The Ohio State University, Columbus, OH, 43210, USA.
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8
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Lee J, Yang M, Song WJ. The expanded landscape of metalloproteins by genetic incorporation of noncanonical amino acids. B KOREAN CHEM SOC 2022. [DOI: 10.1002/bkcs.12635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Jaehee Lee
- Department of Chemistry Seoul National University Seoul South Korea
| | - Minwoo Yang
- Department of Chemistry Seoul National University Seoul South Korea
| | - Woon Ju Song
- Department of Chemistry Seoul National University Seoul South Korea
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9
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Zhu J, Avakyan N, Kakkis AA, Hoffnagle AM, Han K, Li Y, Zhang Z, Choi TS, Na Y, Yu CJ, Tezcan FA. Protein Assembly by Design. Chem Rev 2021; 121:13701-13796. [PMID: 34405992 PMCID: PMC9148388 DOI: 10.1021/acs.chemrev.1c00308] [Citation(s) in RCA: 100] [Impact Index Per Article: 33.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Proteins are nature's primary building blocks for the construction of sophisticated molecular machines and dynamic materials, ranging from protein complexes such as photosystem II and nitrogenase that drive biogeochemical cycles to cytoskeletal assemblies and muscle fibers for motion. Such natural systems have inspired extensive efforts in the rational design of artificial protein assemblies in the last two decades. As molecular building blocks, proteins are highly complex, in terms of both their three-dimensional structures and chemical compositions. To enable control over the self-assembly of such complex molecules, scientists have devised many creative strategies by combining tools and principles of experimental and computational biophysics, supramolecular chemistry, inorganic chemistry, materials science, and polymer chemistry, among others. Owing to these innovative strategies, what started as a purely structure-building exercise two decades ago has, in short order, led to artificial protein assemblies with unprecedented structures and functions and protein-based materials with unusual properties. Our goal in this review is to give an overview of this exciting and highly interdisciplinary area of research, first outlining the design strategies and tools that have been devised for controlling protein self-assembly, then describing the diverse structures of artificial protein assemblies, and finally highlighting the emergent properties and functions of these assemblies.
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Affiliation(s)
| | | | - Albert A. Kakkis
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Alexander M. Hoffnagle
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Kenneth Han
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Yiying Li
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Zhiyin Zhang
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Tae Su Choi
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Youjeong Na
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - Chung-Jui Yu
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
| | - F. Akif Tezcan
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, United States
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10
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Encoding hierarchical assembly pathways of proteins with DNA. Proc Natl Acad Sci U S A 2021; 118:2106808118. [PMID: 34593642 DOI: 10.1073/pnas.2106808118] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/25/2021] [Indexed: 11/18/2022] Open
Abstract
The structural and functional diversity of materials in nature depends on the controlled assembly of discrete building blocks into complex architectures via specific, multistep, hierarchical assembly pathways. Achieving similar complexity in synthetic materials through hierarchical assembly is challenging due to difficulties with defining multiple recognition areas on synthetic building blocks and controlling the sequence through which those recognition sites direct assembly. Here, we show that we can exploit the chemical anisotropy of proteins and the programmability of DNA ligands to deliberately control the hierarchical assembly of protein-DNA materials. Through DNA sequence design, we introduce orthogonal DNA interactions with disparate interaction strengths ("strong" and "weak") onto specific geometric regions of a model protein, stable protein 1 (Sp1). We show that the spatial encoding of DNA ligands leads to highly directional assembly via strong interactions and that, by design, the first stage of assembly increases the multivalency of weak DNA-DNA interactions that give rise to an emergent second stage of assembly. Furthermore, we demonstrate that judicious DNA design not only directs assembly along a given pathway but can also direct distinct structural outcomes from a single pathway. This combination of protein surface and DNA sequence design allows us to encode the structural and chemical information necessary into building blocks to program their multistep hierarchical assembly. Our findings represent a strategy for controlling the hierarchical assembly of proteins to realize a diverse set of protein-DNA materials by design.
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11
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Breul K, Kissel S, Seiffert S. Sticker Multivalency in Metallo-supramolecular Polymer Networks. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01201] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Katharina Breul
- Department of Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10−14, 55128 Mainz, Germany
| | - Sebastian Kissel
- Department of Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10−14, 55128 Mainz, Germany
| | - Sebastian Seiffert
- Department of Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10−14, 55128 Mainz, Germany
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12
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Adachi R, Suzuki S, Mitsuda T, Morita Y, Komatsu T. Supramolecular linear coordination polymers of human serum albumin and haemoglobin. Chem Commun (Camb) 2020; 56:15585-15588. [PMID: 33245310 DOI: 10.1039/d0cc07167f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
We describe the synthesis, structure, and functionalities of water-soluble linear coordination polymers of human serum albumin and haemoglobin, which are connected via a bis(terpyridyl)-Fe2+ complex. These protein fibres were self-assembled by lyophilisation and were transformed into single-wall nanotubes. The biological activities of the protein units were perfectly preserved in the long fibres.
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Affiliation(s)
- Ryo Adachi
- Department of Applied Chemistry, Faculty of Science and Engineering, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo 112-8551, Japan.
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13
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Sun H, Li Y, Yu S, Liu J. Hierarchical Self-Assembly of Proteins Through Rationally Designed Supramolecular Interfaces. Front Bioeng Biotechnol 2020; 8:295. [PMID: 32426335 PMCID: PMC7212437 DOI: 10.3389/fbioe.2020.00295] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Accepted: 03/19/2020] [Indexed: 12/11/2022] Open
Abstract
With the increasing advances in the basic understanding of pathogenesis mechanism and fabrication of advanced biological materials, protein nanomaterials are being developed for their potential bioengineering research and biomedical applications. Among different fabrication strategies, supramolecular self-assembly provides a versatile approach to construct hierarchical nanostructures from polyhedral cages, filaments, tubules, monolayer sheets to even cubic crystals through rationally designed supramolecular interfaces. In this mini review, we will briefly recall recent progress in reconstituting protein interfaces for hierarchical self-assembly and classify by the types of designed protein-protein interactions into receptor-ligand recognition, electrostatic interaction, metal coordination, and non-specific interaction networks. Moreover, some attempts on functionalization of protein superstructures for bioengineering and/or biomedical applications are also shortly discussed. We believe this mini review will outline the stream of hierarchical self-assembly of proteins through rationally designed supramolecular interfaces, which would open minds in visualizing protein-protein recognition and assembly in living cells and organisms, and even constructing multifarious functional bionanomaterials.
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Affiliation(s)
- Hongcheng Sun
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Yan Li
- Key Laboratory of Organosilicon Chemistry and Material Technology, Ministry of Education, Hangzhou Normal University, Hangzhou, China
| | - Shuangjiang Yu
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Junqiu Liu
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
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14
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Gao C, Chen G. Exploring and Controlling the Polymorphism in Supramolecular Assemblies of Carbohydrates and Proteins. Acc Chem Res 2020; 53:740-751. [PMID: 32174104 DOI: 10.1021/acs.accounts.9b00552] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
In biology, polymorphism is a well-known phenomenon by which a discrete biomacromolecule can adopt multiple specific conformations in response to its environment. This term can be extended to the ability of biomacromolecules to pack into different ordered patterns. Thus, exploration and control of the polymorphism of biomacromolecules via supramolecular methods have been key steps in achieving bioinspired structures, developing bioinspired functional materials, and exploring the mechanisms of these self-assembly processes, which are models for more complex biological systems. This task could be difficult for proteins and carbohydrates due to the complicated multiple noncovalent interactions of these two species which can hardly be manipulated.In this account, dealing with the structural polymorphisms from biomacromolecular assemblies, we will first briefly comment on the problems that carbohydrate/protein assemblies are facing, and then on the basis of our long-term research on carbohydrate self-assemblies, we will summarize the new strategies that we have developed in our laboratory in recent years to explore and control the polymorphism of carbohydrate/protein assemblies.Considering the inherent ability of carbohydrates to recognize lectin, we proposed the "inducing ligand" strategy to assemble natural proteins into various nanostructures with highly ordered packing patterns. The newly developed inducing ligand approach opened a new window for protein assembly where dual noncovalent interactions (i.e., carbohydrate-protein interactions and dimerization of rhodamine) instead of the traditionally used protein-protein interactions direct the assembly pattern of proteins. As a result, various polymorphisms of protein assemblies have been constructed by simply changing the ligand chemical structure and/or the rhodamine dimerization.Another concept that we proposed for glycopolymer self-assembly is DISA (i.e., deprotection-induced glycopolymer self-assembly). It is well known that protection-deprotection chemistry has been employed to construct complex oligosaccharide structures. However, its application in glycopolymer self-assembly has been overlooked. We initiated this new strategy with diblock copolymers. Such copolymers with a carbohydrate block having protected pendent groups exist as single chains in organic media. The self-assembly can be initiated by the deprotection of the pendent groups. The process was nicely controlled by introducing various protective groups with different deprotection rates. Later on, the DISA process has been proven practical in water and even in the cellular environment, which opens a new avenue for the development of polymeric glycomaterials.Finally, the resultant polymeric glyco-materials, as a new type of biomimetic materials, provide a nice platform for investigating the functions of glycocalyx. The glycocalyx-mimicking nanoparticles achieved unprecedent functions which exceed their carbohydrate precursors. Here, the reversion of tumor-associated macrophages induced by glycocalyx-mimicking nanoparticles will be discussed with potential applications in cancer immunotherapy, where such a reversion effect could be combined with other methods (e.g., tumor checkpoint blockade).
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Affiliation(s)
- Chendi Gao
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200438, P. R. China
| | - Guosong Chen
- The State Key Laboratory of Molecular Engineering of Polymers and Department of Macromolecular Science, Fudan University, Shanghai 200438, P. R. China
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15
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Oohora K, Hirayama S, Mashima T, Hayashi T. Supramolecular dimerization of a hexameric hemoprotein via multiple pyrene-pyrene interactions. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424619500949] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Protein assemblies are being investigated as a new-class of biomaterials. A supramolecular assembly of a mutant hexameric tyrosine coordinated hemoprotein (HTHP) modified with a pyrene derivative is described. Cysteine was first introduced as a site-specific reaction point at position V44 which is located at the bottom surface of the cylindrical structure of HTHP. [Formula: see text]-(1-pyrenyl)maleimide was then reacted with the mutant. The modification was confirmed by MALDI-TOF mass spectrometry and UV-vis absorption spectroscopy, indicating that approximately 90% cysteine residues are attached via the pyrene derivative. Size exclusion chromatography (SEC) measurements for pyrene-attached HTHP include a single peak which elutes earlier than the unmodified HTHP. Further investigation by SEC and dynamic light scattering (DLS) measurements indicate the desired size corresponding to the dimer of the hemoprotein hexamers. The multivalent effect of pyrene–pyrene interactions including hydrophobic and [Formula: see text]–[Formula: see text] stacking interactions appears to be responsible for including formation of the stable dimer of the hexamers. Interestingly, the assembly dissociates to the hexamer by removal of heme. In the case of the apo-form of pyrene-attached HTHP, the pyrene moiety appears to be incorporated into the heme pocket because the modification point is located at the adjacent residue of the Tyr45 coordinating to heme in the holo-form of HTHP. Subsequent addition of heme into the apo-form of pyrene-attached HTHP regenerates the dimer of the hexamers. The present study demonstrates a unique heme-dependent system in which HTHP is assembled to form a dimer of hexamers in the presence of heme and disassembled by removal of heme.
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Affiliation(s)
- Koji Oohora
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, 565-0871, Japan
- Frontier Research Base for Global Young Researchers, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Shota Hirayama
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, 565-0871, Japan
| | - Tsuyoshi Mashima
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, 565-0871, Japan
| | - Takashi Hayashi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita, 565-0871, Japan
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16
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Diverse protein assembly driven by metal and chelating amino acids with selectivity and tunability. Nat Commun 2019; 10:5545. [PMID: 31804480 PMCID: PMC6895169 DOI: 10.1038/s41467-019-13491-w] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2019] [Accepted: 11/08/2019] [Indexed: 01/01/2023] Open
Abstract
Proteins are versatile natural building blocks with highly complex and multifunctional architectures, and self-assembled protein structures have been created by the introduction of covalent, noncovalent, or metal-coordination bonding. Here, we report the robust, selective, and reversible metal coordination properties of unnatural chelating amino acids as the sufficient and dominant driving force for diverse protein self-assembly. Bipyridine-alanine is genetically incorporated into a D3 homohexamer. Depending on the position of the unnatural amino acid, 1-directional, crystalline and noncrystalline 2-directional, combinatory, and hierarchical architectures are effectively created upon the addition of metal ions. The length and shape of the structures is tunable by altering conditions related to thermodynamics and kinetics of metal-coordination and subsequent reactions. The crystalline 1-directional and 2-directional biomaterials retain their native enzymatic activities with increased thermal stability, suggesting that introducing chelating ligands provides a specific chemical basis to synthesize diverse protein-based functional materials while retaining their native structures and functions. Precise manipulation of protein self-assembly in vitro is challenging. Here, the authors developed an approach for driving metal-mediated reversible protein assembly by genetically installing a bipyridine residue into an oligomeric (D3) protein.
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17
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Sampani SI, Al-Hilaly YK, Malik S, Serpell LC, Kostakis GE. Zinc-dysprosium functionalized amyloid fibrils. Dalton Trans 2019; 48:15371-15375. [PMID: 31107476 DOI: 10.1039/c9dt01134j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The heterometallic Zn2Dy2 entity bearing partially saturated metal centres covalently decorates a highly ordered amyloid fibril core and the functionalised assembly exhibits catalytic Lewis acid behaviour.
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18
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Wang H, Zhu Z, Ma X, Zou H, Liang F. Metal–Helix Frameworks Formed by
μ
3
‐NO
3
−
with Different Orientations and Connected to a Heterometallic Cu
II
10
Dy
III
2
Folded Cluster. Chemistry 2019; 25:10813-10817. [DOI: 10.1002/chem.201902096] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 07/04/2019] [Indexed: 01/07/2023]
Affiliation(s)
- Hai‐Ling Wang
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal ResourcesSchool of Chemistry & Pharmacy of Guangxi, Normal University Guilin 541004 P. R. China
| | - Zhong‐Hong Zhu
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal ResourcesSchool of Chemistry & Pharmacy of Guangxi, Normal University Guilin 541004 P. R. China
| | - Xiong‐Feng Ma
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal ResourcesSchool of Chemistry & Pharmacy of Guangxi, Normal University Guilin 541004 P. R. China
| | - Hua‐Hong Zou
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal ResourcesSchool of Chemistry & Pharmacy of Guangxi, Normal University Guilin 541004 P. R. China
| | - Fu‐Pei Liang
- State Key Laboratory for Chemistry and Molecular Engineering of Medicinal ResourcesSchool of Chemistry & Pharmacy of Guangxi, Normal University Guilin 541004 P. R. China
- Guangxi Key Laboratory of Electrochemical and Magnetochemical Functional MaterialsCollege of Chemistry and BioengineeringGuilin University of Technology Guilin 541004 P. R. China
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19
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Garcia‐Seisdedos H, Villegas JA, Levy ED. Infinite Ansammlungen gefalteter Proteine im Kontext von Evolution, Krankheiten und Proteinentwicklung. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201806092] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
| | - José A. Villegas
- Department of Structural BiologyWeizmann Institute of Science Rehovot 7610001 Israel
| | - Emmanuel D. Levy
- Department of Structural BiologyWeizmann Institute of Science Rehovot 7610001 Israel
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20
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Garcia‐Seisdedos H, Villegas JA, Levy ED. Infinite Assembly of Folded Proteins in Evolution, Disease, and Engineering. Angew Chem Int Ed Engl 2019; 58:5514-5531. [PMID: 30133878 PMCID: PMC6471489 DOI: 10.1002/anie.201806092] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Revised: 08/06/2018] [Indexed: 12/14/2022]
Abstract
Mutations and changes in a protein's environment are well known for their potential to induce misfolding and aggregation, including amyloid formation. Alternatively, such perturbations can trigger new interactions that lead to the polymerization of folded proteins. In contrast to aggregation, this process does not require misfolding and, to highlight this difference, we refer to it as agglomeration. This term encompasses the amorphous assembly of folded proteins as well as the polymerization in one, two, or three dimensions. We stress the remarkable potential of symmetric homo-oligomers to agglomerate even by single surface point mutations, and we review the double-edged nature of this potential: how aberrant assemblies resulting from agglomeration can lead to disease, but also how agglomeration can serve in cellular adaptation and be exploited for the rational design of novel biomaterials.
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Affiliation(s)
| | - José A. Villegas
- Department of Structural BiologyWeizmann Institute of ScienceRehovot7610001Israel
| | - Emmanuel D. Levy
- Department of Structural BiologyWeizmann Institute of ScienceRehovot7610001Israel
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21
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Misra R, Saseendran A, Dey S, Gopi HN. Metal‐Helix Frameworks from Short Hybrid Peptide Foldamers. Angew Chem Int Ed Engl 2019; 58:2251-2255. [DOI: 10.1002/anie.201810849] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Indexed: 12/13/2022]
Affiliation(s)
- Rajkumar Misra
- Department of ChemistryIndian Institution of Science Education and Research Dr. Homi Bhabha Road Pune- 411008 India
| | - Abhijith Saseendran
- Department of ChemistryIndian Institution of Science Education and Research Dr. Homi Bhabha Road Pune- 411008 India
| | - Sanjit Dey
- Department of ChemistryIndian Institution of Science Education and Research Dr. Homi Bhabha Road Pune- 411008 India
| | - Hosahudya N. Gopi
- Department of ChemistryIndian Institution of Science Education and Research Dr. Homi Bhabha Road Pune- 411008 India
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22
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Misra R, Saseendran A, Dey S, Gopi HN. Metal-Helix Frameworks from Short Hybrid Peptide Foldamers. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201810849] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Rajkumar Misra
- Department of Chemistry; Indian Institution of Science Education and Research; Dr. Homi Bhabha Road Pune- 411008 India
| | - Abhijith Saseendran
- Department of Chemistry; Indian Institution of Science Education and Research; Dr. Homi Bhabha Road Pune- 411008 India
| | - Sanjit Dey
- Department of Chemistry; Indian Institution of Science Education and Research; Dr. Homi Bhabha Road Pune- 411008 India
| | - Hosahudya N. Gopi
- Department of Chemistry; Indian Institution of Science Education and Research; Dr. Homi Bhabha Road Pune- 411008 India
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23
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Kuan SL, Bergamini FRG, Weil T. Functional protein nanostructures: a chemical toolbox. Chem Soc Rev 2018; 47:9069-9105. [PMID: 30452046 PMCID: PMC6289173 DOI: 10.1039/c8cs00590g] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2018] [Indexed: 01/08/2023]
Abstract
Nature has evolved an optimal synthetic factory in the form of translational and posttranslational processes by which millions of proteins with defined primary sequences and 3D structures can be built. Nature's toolkit gives rise to protein building blocks, which dictates their spatial arrangement to form functional protein nanostructures that serve a myriad of functions in cells, ranging from biocatalysis, formation of structural networks, and regulation of biochemical processes, to sensing. With the advent of chemical tools for site-selective protein modifications and recombinant engineering, there is a rapid development to develop and apply synthetic methods for creating structurally defined, functional protein nanostructures for a broad range of applications in the fields of catalysis, materials and biomedical sciences. In this review, design principles and structural features for achieving and characterizing functional protein nanostructures by synthetic approaches are summarized. The synthetic customization of protein building blocks, the design and introduction of recognition units and linkers and subsequent assembly into structurally defined protein architectures are discussed herein. Key examples of these supramolecular protein nanostructures, their unique functions and resultant impact for biomedical applications are highlighted.
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Affiliation(s)
- Seah Ling Kuan
- Max-Planck Institute for Polymer Research
,
Ackermannweg 10
, 55128 Mainz
, Germany
.
;
- Institute of Inorganic Chemistry I – Ulm University
,
Albert-Einstein-Allee 11
, 89081 Ulm
, Germany
| | - Fernando R. G. Bergamini
- Institute of Chemistry
, Federal University of Uberlândia – UFU
,
38400-902 Uberlândia
, MG
, Brazil
| | - Tanja Weil
- Max-Planck Institute for Polymer Research
,
Ackermannweg 10
, 55128 Mainz
, Germany
.
;
- Institute of Inorganic Chemistry I – Ulm University
,
Albert-Einstein-Allee 11
, 89081 Ulm
, Germany
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24
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Ghosh T, Fridman N, Kosa M, Maayan G. Self-Assembled Cyclic Structures from Copper(II) Peptoids. Angew Chem Int Ed Engl 2018; 57:7703-7708. [DOI: 10.1002/anie.201800583] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Revised: 03/01/2018] [Indexed: 01/11/2023]
Affiliation(s)
- Totan Ghosh
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
| | - Natalia Fridman
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
| | - Monica Kosa
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
| | - Galia Maayan
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
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25
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Ghosh T, Fridman N, Kosa M, Maayan G. Self-Assembled Cyclic Structures from Copper(II) Peptoids. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800583] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Totan Ghosh
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
| | - Natalia Fridman
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
| | - Monica Kosa
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
| | - Galia Maayan
- Schulich Faculty of Chemistry; Technion-Israel Institute of Technology; Technion City Haifa 3200008 Israel
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26
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Oda A, Nagao S, Yamanaka M, Ueda I, Watanabe H, Uchihashi T, Shibata N, Higuchi Y, Hirota S. Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an α-Helix-Inserted Circular Permutant of Cytochrome c
555. Chem Asian J 2018; 13:964-967. [DOI: 10.1002/asia.201800252] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Indexed: 01/11/2023]
Affiliation(s)
- Akiya Oda
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Satoshi Nagao
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Masaru Yamanaka
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Ikki Ueda
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
| | - Hiroki Watanabe
- Department of Physics; Nagoya University; Chikusa-ku Nagoya Aichi 464-8602 Japan
| | - Takayuki Uchihashi
- Department of Physics; Nagoya University; Chikusa-ku Nagoya Aichi 464-8602 Japan
| | - Naoki Shibata
- Department of Life Science; Graduate School of Life Science; University of Hyogo; 3-2-1 Koto Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
- RIKEN SPring-8 Center; 1-1-1 Koto Sayo-cho Sayo-gun, Hyogo 679-5148 Japan
| | - Yoshiki Higuchi
- Department of Life Science; Graduate School of Life Science; University of Hyogo; 3-2-1 Koto Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
- RIKEN SPring-8 Center; 1-1-1 Koto Sayo-cho Sayo-gun, Hyogo 679-5148 Japan
| | - Shun Hirota
- Graduate School of Materials Science; Nara Institute of Science and Technology; 8916-5 Takayama Ikoma Nara 630-0192 Japan
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27
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Li X, Bai Y, Huang Z, Si C, Dong Z, Luo Q, Liu J. A highly controllable protein self-assembly system with morphological versatility induced by reengineered host-guest interactions. NANOSCALE 2017; 9:7991-7997. [PMID: 28574092 DOI: 10.1039/c7nr01612c] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Manipulating proteins to self-assemble into highly ordered nanostructures not only provides insights into the natural protein assembly process but also allows access to advanced biomaterials. Host-guest interactions have been widely used in the construction of artificial protein assemblies in recent years. CB[8] can selectively associate with two tripeptide Phe-Gly-Gly (FGG) tags with an extraordinarily high binding affinity (Kter = 1.5 × 1011 M-2). However, the FGG tags utilized before are all fixed to the N-termini via genetic fusion; this spatial limitation greatly confined the availability of the CB[8]/FGG pair in the construction of more sophisticated protein nanostructures. Here we first designed and synthesized a maleimide-functionalized Phe-Gly-Gly tag as a versatile site-specific protein modification tool; this designed tag can site-selectively introduce desired guest moieties onto protein surfaces for host-guest driven protein assembly. When regulating the self-assembly process of proteins and CB[8], the constructed protein nanosystem can exhibit distinctive morphological diversities ranging from nanorings, nanospirals, nanowires to superwires. This work developed a new strategy for site-specific protein modification of the CB[8] binding tag and provides a possible direction for the construction of 'smart', dynamic self-assembly systems.
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Affiliation(s)
- Xiumei Li
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
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28
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Tavenor NA, Murnin MJ, Horne WS. Supramolecular Metal-Coordination Polymers, Nets, and Frameworks from Synthetic Coiled-Coil Peptides. J Am Chem Soc 2017; 139:2212-2215. [DOI: 10.1021/jacs.7b00651] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Nathan A. Tavenor
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Matthew J. Murnin
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - W. Seth Horne
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
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29
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Zhang G, Zhang J, Su P, Xu Z, Li W, Shen C, Meng Q. Non-activation MOF arrays as a coating layer to fabricate a stable superhydrophobic micro/nano flower-like architecture. Chem Commun (Camb) 2017; 53:8340-8343. [DOI: 10.1039/c7cc03409a] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Non-activation metal–organic framework (MOF) arrays are directly applied as a coating layer to fabricate a stable superhydrophobic micro/nano flower-like architecture.
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Affiliation(s)
- Guoliang Zhang
- Institute of Oceanic and Environmental Chemical Engineering
- State Key Lab Breeding Base of Green Chemical Synthesis Technology
- Zhejiang University of Technology
- Hangzhou 310014
- China
| | - Jiaheng Zhang
- Institute of Oceanic and Environmental Chemical Engineering
- State Key Lab Breeding Base of Green Chemical Synthesis Technology
- Zhejiang University of Technology
- Hangzhou 310014
- China
| | - Pengcheng Su
- Institute of Oceanic and Environmental Chemical Engineering
- State Key Lab Breeding Base of Green Chemical Synthesis Technology
- Zhejiang University of Technology
- Hangzhou 310014
- China
| | - Zehai Xu
- Institute of Oceanic and Environmental Chemical Engineering
- State Key Lab Breeding Base of Green Chemical Synthesis Technology
- Zhejiang University of Technology
- Hangzhou 310014
- China
| | - Wanbin Li
- Institute of Oceanic and Environmental Chemical Engineering
- State Key Lab Breeding Base of Green Chemical Synthesis Technology
- Zhejiang University of Technology
- Hangzhou 310014
- China
| | - Chong Shen
- College of Chemical and Biological Engineering
- State Key Laboratory of Chemical Engineering
- Zhejiang University
- Hangzhou 310027
- China
| | - Qin Meng
- College of Chemical and Biological Engineering
- State Key Laboratory of Chemical Engineering
- Zhejiang University
- Hangzhou 310027
- China
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30
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Sukegawa H, Nishimura T, Yoshio M, Kajiyama S, Kato T. One-dimensional supramolecular hybrids: self-assembled nanofibrous materials based on a sugar gelator and calcite developed along an unusual axis. CrystEngComm 2017. [DOI: 10.1039/c7ce00140a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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32
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Luo Q, Hou C, Bai Y, Wang R, Liu J. Protein Assembly: Versatile Approaches to Construct Highly Ordered Nanostructures. Chem Rev 2016; 116:13571-13632. [PMID: 27587089 DOI: 10.1021/acs.chemrev.6b00228] [Citation(s) in RCA: 357] [Impact Index Per Article: 44.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Nature endows life with a wide variety of sophisticated, synergistic, and highly functional protein assemblies. Following Nature's inspiration to assemble protein building blocks into exquisite nanostructures is emerging as a fascinating research field. Dictating protein assembly to obtain highly ordered nanostructures and sophisticated functions not only provides a powerful tool to understand the natural protein assembly process but also offers access to advanced biomaterials. Over the past couple of decades, the field of protein assembly has undergone unexpected and rapid developments, and various innovative strategies have been proposed. This Review outlines recent advances in the field of protein assembly and summarizes several strategies, including biotechnological strategies, chemical strategies, and combinations of these approaches, for manipulating proteins to self-assemble into desired nanostructures. The emergent applications of protein assemblies as versatile platforms to design a wide variety of attractive functional materials with improved performances have also been discussed. The goal of this Review is to highlight the importance of this highly interdisciplinary field and to promote its growth in a diverse variety of research fields ranging from nanoscience and material science to synthetic biology.
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Affiliation(s)
- Quan Luo
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
| | - Chunxi Hou
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
| | - Yushi Bai
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
| | - Ruibing Wang
- State Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau , Taipa, Macau SAR 999078, China
| | - Junqiu Liu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, P. R. China
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33
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Nepal M, Sheedlo MJ, Das C, Chmielewski J. Accessing Three-Dimensional Crystals with Incorporated Guests through Metal-Directed Coiled-Coil Peptide Assembly. J Am Chem Soc 2016; 138:11051-7. [PMID: 27500907 DOI: 10.1021/jacs.6b06708] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Manish Nepal
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
| | - Michael J. Sheedlo
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
| | - Chittaranjan Das
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
| | - Jean Chmielewski
- Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907, United States
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34
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Harada H, Onoda A, Uematsu T, Kuwabata S, Hayashi T. Photocatalytic Properties of TiO2 Composites Immobilized with Gold Nanoparticle Assemblies Using the Streptavidin-Biotin Interaction. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:6459-6467. [PMID: 27268721 DOI: 10.1021/acs.langmuir.6b01073] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
A method using biomolecules to precisely fabricate the morphology of metal nanoparticles immobilized on the surface of a semiconductor using biomolecules is described. A biotin moiety (Biot) is introduced onto the surface of a gold nanoparticle (AuNP) by covalent coupling with α-lipoic acid to assemble AuNPs in the presence of streptavidin (STV). The assembly of Biot-AuNP/STV is immobilized on the surface of TiO2 chemically modified with 1-(3-aminopropyl)silatrane (APS) to provide a positively charged surface. The Au content immobilized on the surface of TiO2 is clearly increased to 9.5 wt % (Au) as a result of the STV-biotin interaction and the electrostatic interaction between negatively charged Biot-AuNPs and the positively charged surface of APS/TiO2. Transmission electron microscopy (TEM) analysis reveals that the composite has an ordered surface geometry in which Biot-AuNPs are spread over the composite surface in two dimensions. The photocatalytic activity toward decomposition of methyl orange dye promoted by this composite is 55%, which is higher than that of the other composites. The Biot-AuNP/STV@APS/TiO2 composite efficiently reduces O2 molecules at Eonset = -0.23 V vs Ag|AgCl, which is more positive than that of other composites (Eonset = -0.40 to -0.32 V). The result suggests that an increased number of AuNPs immobilized in close contact with the TiO2 surface facilitates photoinduced charge transfer. This strategy, which takes advantage of the specific interactions provided by biomolecules and the chemical modification on the surface, has remarkable potential for efficient fabrication of metal nanoparticles on the surface of the semiconductor, which accelerates the reduction of oxygen molecules.
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Affiliation(s)
- Hirofumi Harada
- Department of Applied Chemistry and ‡Frontier Research Base for Global Young Researchers, Graduate School of Engineering, Osaka University , Suita 565-0871, Japan
| | - Akira Onoda
- Department of Applied Chemistry and ‡Frontier Research Base for Global Young Researchers, Graduate School of Engineering, Osaka University , Suita 565-0871, Japan
| | - Taro Uematsu
- Department of Applied Chemistry and ‡Frontier Research Base for Global Young Researchers, Graduate School of Engineering, Osaka University , Suita 565-0871, Japan
| | - Susumu Kuwabata
- Department of Applied Chemistry and ‡Frontier Research Base for Global Young Researchers, Graduate School of Engineering, Osaka University , Suita 565-0871, Japan
| | - Takashi Hayashi
- Department of Applied Chemistry and ‡Frontier Research Base for Global Young Researchers, Graduate School of Engineering, Osaka University , Suita 565-0871, Japan
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35
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Abstract
Proteins, as the elemental basis of living organisms, mostly execute their biological tasks in the form of supramolecular self-assemblies with subtle architectures, dynamic interactions and versatile functionalities. Inspired by the structural harmony and functional beauty of natural protein self-assemblies to fabricate sophisticated yet highly ordered protein superstructures represents an adventure in the pursuit of nature's supreme wisdom. In this review, we focus on building protein self-assembly systems based on supramolecular strategies and classify recent progress by the types of utilized supramolecular driving forces. Especially, the design strategy, structure control and the thermodynamic/kinetic regulation of the self-assemblies, which will in turn provide insights into the natural biological self-assembly mechanism, are highlighted. In addition, recently, this research field is starting to extend its interest beyond constructing complex morphologies towards the potential applications of the self-assembly systems; several attempts to design functional protein complexes are also discussed. As such, we hope that this review will provide a panoramic sketch of the field and draw a roadmap towards the ultimate construction of advanced protein self-assemblies that even can serve as analogues of their natural counterparts.
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Affiliation(s)
- Yushi Bai
- State Key laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
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36
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Kuan SL, Förtsch C, Ng DYW, Fischer S, Tokura Y, Liu W, Wu Y, Koynov K, Barth H, Weil T. A Supramolecular Approach toward Bioinspired PAMAM-Dendronized Fusion Toxins. Macromol Biosci 2016; 16:803-10. [PMID: 26833574 DOI: 10.1002/mabi.201500417] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2015] [Revised: 12/28/2015] [Indexed: 11/07/2022]
Abstract
Nature has provided a highly optimized toolbox in bacterial endotoxins with precise functions dictated by their clear structural division. Inspired by this streamlined design, a supramolecular approach capitalizing on the strong biomolecular (streptavidin (SA))-biotin interactions is reported herein to prepare two multipartite fusion constructs, which involves the generation 2.0 (D2) or generation 3.0 (D3) polyamidoamine-dendronized transporter proteins (dendronized streptavidin (D3SA) and dendronized human serum albumin (D2HSA)) non-covalently fused to the C3bot1 enzyme from Clostridium botulinum, a potent and specific Rho-inhibitor. The fusion constructs, D3SA-C3 and D2HSA-C3, represent the first examples of dendronized protein transporters that are fused to the C3 enzyme, and it is successfully demonstrated that the C3 Rho-inhibitor is delivered into the cytosol of mammalian cells as determined from the characteristic C3-mediated changes in cell morphology and confocal microscopy. The design circumvents the low uptake of the C3 enzyme by eukaryotic cells and holds great promise for reprogramming the properties of toxin enzymes using a supramolecular approach to broaden their therapeutic applications.
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Affiliation(s)
- Seah Ling Kuan
- Institute of Organic Chemistry III - Macromolecular Chemistry & Biomaterials, University of Ulm, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Christina Förtsch
- Institute of Pharmacology and Toxicology, University of Ulm Medical Center, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - David Yuen Wah Ng
- Institute of Organic Chemistry III - Macromolecular Chemistry & Biomaterials, University of Ulm, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Stephan Fischer
- Institute of Pharmacology and Toxicology, University of Ulm Medical Center, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Yu Tokura
- Institute of Organic Chemistry III - Macromolecular Chemistry & Biomaterials, University of Ulm, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Weina Liu
- Institute of Organic Chemistry III - Macromolecular Chemistry & Biomaterials, University of Ulm, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Yuzhou Wu
- Institute of Organic Chemistry III - Macromolecular Chemistry & Biomaterials, University of Ulm, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Kaloian Koynov
- Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Holger Barth
- Institute of Pharmacology and Toxicology, University of Ulm Medical Center, Albert-Einstein-Allee 11, 89081, Ulm, Germany
| | - Tanja Weil
- Institute of Organic Chemistry III - Macromolecular Chemistry & Biomaterials, University of Ulm, Albert-Einstein-Allee 11, 89081, Ulm, Germany
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37
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Munch HK, Nygaard J, Christensen NJ, Engelbrekt C, Østergaard M, Porsgaard T, Hoeg-Jensen T, Zhang J, Arleth L, Thulstrup PW, Jensen KJ. Construction of Insulin 18-mer Nanoassemblies Driven by Coordination to Iron(II) and Zinc(II) Ions at Distinct Sites. Angew Chem Int Ed Engl 2016; 55:2378-81. [DOI: 10.1002/anie.201509088] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Revised: 12/01/2015] [Indexed: 11/06/2022]
Affiliation(s)
| | - Jesper Nygaard
- MAX-lab; Lund University; Sweden
- Niels Bohr Institute; University of Copenhagen; Denmark
| | | | | | | | | | | | - Jingdong Zhang
- Department of Chemistry; Technical University of Denmark; Kgs. Lyngby Denmark
| | - Lise Arleth
- Niels Bohr Institute; University of Copenhagen; Denmark
| | | | - Knud J. Jensen
- Department of Chemistry; University of Copenhagen; Denmark
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38
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Munch HK, Nygaard J, Christensen NJ, Engelbrekt C, Østergaard M, Porsgaard T, Hoeg-Jensen T, Zhang J, Arleth L, Thulstrup PW, Jensen KJ. Construction of Insulin 18-mer Nanoassemblies Driven by Coordination to Iron(II) and Zinc(II) Ions at Distinct Sites. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201509088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
| | - Jesper Nygaard
- MAX-lab; Lund University; Sweden
- Niels Bohr Institute; University of Copenhagen; Denmark
| | | | | | | | | | | | - Jingdong Zhang
- Department of Chemistry; Technical University of Denmark; Kgs. Lyngby Denmark
| | - Lise Arleth
- Niels Bohr Institute; University of Copenhagen; Denmark
| | | | - Knud J. Jensen
- Department of Chemistry; University of Copenhagen; Denmark
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39
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Krieg E, Bastings MMC, Besenius P, Rybtchinski B. Supramolecular Polymers in Aqueous Media. Chem Rev 2016; 116:2414-77. [DOI: 10.1021/acs.chemrev.5b00369] [Citation(s) in RCA: 527] [Impact Index Per Article: 65.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
| | | | - Pol Besenius
- Institute
of Organic Chemistry, Johannes Gutenberg-Universität Mainz, Mainz 55128, Germany
| | - Boris Rybtchinski
- Department
of Organic Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel
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40
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Fan J, Zhang Y, Ji N, Duan X, Liu H, Wang J, Jiang H. Hierarchical structures of self-assembled hybrid calcium carbonate: nucleation kinetic studies on biomineralization. CrystEngComm 2015. [DOI: 10.1039/c5ce00621j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The mechanism of self-assembled CaCO3 hierarchical structures was elucidated from the viewpoints of kinetically-driven nucleation and phosvitin-mediated mineralization.
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Affiliation(s)
- Jiadong Fan
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
| | - Yang Zhang
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
| | - Nianjing Ji
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
| | - Xiulan Duan
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
| | - Hong Liu
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
| | - Jiyang Wang
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
| | - Huaidong Jiang
- State Key Laboratory of Crystal Materials
- Shandong University
- Jinan 250100, China
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41
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Zhang Y, Li K, Zhang Q, Liu W, Liu Y, Banks CE. Multi-dimensional hydroxyapatite (HAp) nanocluster architectures fabricated via Nafion-assisted biomineralization. NEW J CHEM 2015. [DOI: 10.1039/c4nj01292e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The Nafion-assisted biomineralization strategy utilized for the fabrication of multi-dimensional hydroxyapatite (HAp) will be of great significance not only for constructing other functional materials with complex structure but also for their further extensive applications.
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Affiliation(s)
- Ying Zhang
- School of Life Science & Technology
- Huazhong University of Science & Technology
- Wuhan 430074
- P. R. China
| | - Kaiyang Li
- State Key Laboratory of Powder Metallurgy
- Central South University
- Changsha 410083
- P. R. China
| | - Qing Zhang
- State Key Laboratory of Powder Metallurgy
- Central South University
- Changsha 410083
- P. R. China
| | - Wei Liu
- School of Life Science & Technology
- Huazhong University of Science & Technology
- Wuhan 430074
- P. R. China
| | - Yong Liu
- State Key Laboratory of Powder Metallurgy
- Central South University
- Changsha 410083
- P. R. China
| | - Craig E. Banks
- Faculty of Science and Engineering
- School of Chemistry and the Environment
- Division of Chemistry and Environmental Science
- Manchester Metropolitan University
- Manchester M1 5GD
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42
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Dang DT, Bosmans RPG, Moitzi C, Voets IK, Brunsveld L. Solution structure of a cucurbit[8]uril induced compact supramolecular protein dimer. Org Biomol Chem 2014; 12:9341-4. [PMID: 25337659 DOI: 10.1039/c4ob01729c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Supramolecular assembly of a beta-barrel protein via cucurbit[8]uril results in compact z-shaped protein dimers. SAXS data reveal the formation of a well ordered protein dimer, notwithstanding being connected by a reversible and flexible peptide linker, and highlight the supramolecular induced interplay of the proteins, analogous to covalently linked proteins.
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Affiliation(s)
- Dung T Dang
- Department of Biomedical Engineering, Eindhoven University of Technology, Den Dolech 2, 5612 AZ, Eindhoven, The Netherlands.
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43
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Miao L, Han J, Zhang H, Zhao L, Si C, Zhang X, Hou C, Luo Q, Xu J, Liu J. Quantum-dot-induced self-assembly of cricoid protein for light harvesting. ACS NANO 2014; 8:3743-3751. [PMID: 24601558 DOI: 10.1021/nn500414u] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Stable protein one (SP1) has been demonstrated as an appealing building block to design highly ordered architectures, despite the hybrid assembly with other nano-objects still being a challenge. Herein, we developed a strategy to construct high-ordered protein nanostructures by electrostatic self-assembly of cricoid protein nanorings and globular quantum dots (QDs). Using multielectrostatic interactions between 12mer protein nanoring SP1 and oppositely charged CdTe QDs, highly ordered nanowires with sandwich structure were achieved by hybridized self-assembly. QDs with different sizes (QD1, 3-4 nm; QD2, 5-6 nm; QD3, ∼10 nm) would induce the self-assembly protein rings into various nanowires, subsequent bundles, and irregular networks in aqueous solution. Atomic force microscopy, transmission electron microscopy, and dynamic light scattering characterizations confirmed that the size of QDs and the structural topology of the nanoring play critical functions in the formation of the superstructures. Furthermore, an ordered arrangement of QDs provides an ideal scaffold for designing the light-harvesting antenna. Most importantly, when different sized QDs (e.g., QD1 and QD3) self-assembled with SP1, an extremely efficient Förster resonance energy transfer was observed on these protein nanowires. The self-assembled protein nanostructures were demonstrated as a promising scaffold for the development of an artificial light-harvesting system.
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Affiliation(s)
- Lu Miao
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University , 2699 Qianjin Street, Changchun 130012, China
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44
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Oohora K, Hayashi T. Hemoprotein-based supramolecular assembling systems. Curr Opin Chem Biol 2014; 19:154-61. [PMID: 24658057 DOI: 10.1016/j.cbpa.2014.02.014] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Revised: 02/11/2014] [Accepted: 02/13/2014] [Indexed: 12/11/2022]
Abstract
Hemoproteins are metalloproteins which include iron porphyrin as a cofactor. These proteins have received much attention as promising building blocks for development of new types of biomaterials. This review summarizes recent efforts in the rational design of supramolecular hemoprotein assemblies using myoglobin, horseradish peroxidase, cytochrome b562 and cytochrome c as a monomer unit. The processes of coordination bond-mediated assembly or domain swapping-mediated assembly provide defined oligomers, while hemoprotein reconstitution with synthetic heme derivatives provides submicrometer-sized structures such as fibrils, vesicles/micelles, or networks. Interestingly, several of these assembled structures maintain the intrinsic functions of monomer units. The chemical and/or biological strategies described in this review will lead to the creation of unique hemoprotein-based functional biomaterials.
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Affiliation(s)
- Koji Oohora
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University Suita, 565-0871, Japan
| | - Takashi Hayashi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University Suita, 565-0871, Japan.
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45
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Exceptionally stable, redox-active supramolecular protein assemblies with emergent properties. Proc Natl Acad Sci U S A 2014; 111:2897-902. [PMID: 24516140 DOI: 10.1073/pnas.1319866111] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The designed assembly of proteins into well-defined supramolecular architectures not only tests our understanding of protein-protein interactions, but it also provides an opportunity to tailor materials with new physical and chemical properties. Previously, we described that RIDC3, a designed variant of the monomeric electron transfer protein cytochrome cb562, could self-assemble through Zn(2+) coordination into uniform 1D nanotubes or 2D arrays with crystalline order. Here we show that these 1D and 2D RIDC3 assemblies display very high chemical stabilities owing to their metal-mediated frameworks, maintaining their structural order in ≥90% (vol/vol) of several polar organic solvents including tetrahydrofuran (THF) and isopropanol (iPrOH). In contrast, the unassembled RIDC3 monomers denature in ∼30% THF and 50% iPrOH, indicating that metal-mediated self-assembly also leads to considerable stabilization of the individual building blocks. The 1D and 2D RIDC3 assemblies are highly thermostable as well, remaining intact at up to ∼70 °C and ∼90 °C, respectively. The 1D nanotubes cleanly convert into the 2D arrays on heating above 70 °C, a rare example of a thermal crystalline-to-crystalline conversion in a biomolecular assembly. Finally, we demonstrate that the Zn-directed RIDC3 assemblies can be used to spatiotemporally control the templated growth of small Pt(0) nanocrystals. This emergent function is enabled by and absolutely dependent on both the supramolecular assembly of RIDC3 molecules (to form a periodically organized structural template) and their innate redox activities (to direct Pt(2+) reduction).
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46
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Sontz PA, Song WJ, Tezcan FA. Interfacial metal coordination in engineered protein and peptide assemblies. Curr Opin Chem Biol 2014; 19:42-9. [PMID: 24780278 DOI: 10.1016/j.cbpa.2013.12.013] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Revised: 12/12/2013] [Accepted: 12/12/2013] [Indexed: 12/29/2022]
Abstract
Metal ions are frequently found in natural protein-protein interfaces, where they stabilize quaternary or supramolecular protein structures, mediate transient protein-protein interactions, and serve as catalytic centers. Paralleling these natural roles, coordination chemistry of metal ions is being increasingly utilized in creative ways toward engineering and controlling the assembly of functional supramolecular peptide and protein architectures. Here we provide a brief overview of this emerging branch of metalloprotein/peptide engineering and highlight a few select examples from the recent literature that best capture the diversity and future potential of approaches that are being developed.
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Affiliation(s)
- Pamela A Sontz
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, United States
| | - Woon Ju Song
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, United States
| | - F Akif Tezcan
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, United States.
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47
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Abd-El-Aziz AS, Pilfold JL, Momeni BZ, Proud AJ, Pearson JK. Design of coordination polymers with 4′-substituted functionalized terpyridyls in the backbone and pendent cyclopentadienyliron moieties. Polym Chem 2014. [DOI: 10.1039/c4py00249k] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Synthesis and characterization of coordination polymers containing 4′-substituted functionalized terpyridines and cyclopentadienyliron moieties.
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Affiliation(s)
- Alaa S. Abd-El-Aziz
- Department of Chemistry
- University of Prince Edward Island
- Charlottetown, Canada
- Department of Chemistry
- University of British Columbia
| | | | - Badri Z. Momeni
- Department of Chemistry
- University of British Columbia
- Kelowna, Canada
- Faculty of Chemistry
- K.N. Toosi University of Technology
| | - Adam J. Proud
- Department of Chemistry
- University of Prince Edward Island
- Charlottetown, Canada
| | - Jason K. Pearson
- Department of Chemistry
- University of Prince Edward Island
- Charlottetown, Canada
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48
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Bahreman A, Cuello-Garibo JA, Bonnet S. Yellow-light sensitization of a ligand photosubstitution reaction in a ruthenium polypyridyl complex covalently bound to a rhodamine dye. Dalton Trans 2014; 43:4494-505. [DOI: 10.1039/c3dt52643g] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A rhodamine dye was covalently attached to a ruthenium complex to enhance the rate of ligand photosubstitution under yellow light irradiation.
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Affiliation(s)
- Azadeh Bahreman
- Leiden Institute of Chemistry
- Gorlaeus Laboratories
- Leiden University
- Leiden, The Netherlands
| | | | - Sylvestre Bonnet
- Leiden Institute of Chemistry
- Gorlaeus Laboratories
- Leiden University
- Leiden, The Netherlands
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49
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Ohkanda J. Module Assembly for Designing Multivalent Mid-Sized Inhibitors of Protein-Protein Interactions. CHEM REC 2013; 13:561-75. [DOI: 10.1002/tcr.201300026] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2013] [Indexed: 11/06/2022]
Affiliation(s)
- Junko Ohkanda
- Institute for Chemical Research; Kyoto University; Gokasho, Uji Kyoto 611-0011 Japan
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50
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Petkau-Milroy K, Sonntag MH, Colditz A, Brunsveld L. Multivalent protein assembly using monovalent self-assembling building blocks. Int J Mol Sci 2013; 14:21189-201. [PMID: 24152447 PMCID: PMC3821665 DOI: 10.3390/ijms141021189] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2013] [Revised: 09/13/2013] [Accepted: 10/08/2013] [Indexed: 11/17/2022] Open
Abstract
Discotic molecules, which self-assemble in water into columnar supramolecular polymers, emerged as an alternative platform for the organization of proteins. Here, a monovalent discotic decorated with one single biotin was synthesized to study the self-assembling multivalency of this system in regard to streptavidin. Next to tetravalent streptavidin, monovalent streptavidin was used to study the protein assembly along the supramolecular polymer in detail without the interference of cross-linking. Upon self-assembly of the monovalent biotinylated discotics, multivalent proteins can be assembled along the supramolecular polymer. The concentration of discotics, which influences the length of the final polymers at the same time dictates the amount of assembled proteins.
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Affiliation(s)
- Katja Petkau-Milroy
- Laboratory of Chemical Biology and Institute of Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, Den Dolech 2, Eindhoven 5612AZ, The Netherlands; E-Mails: (K.P.-M.); (M.H.S.); (A.C.)
| | - Michael H. Sonntag
- Laboratory of Chemical Biology and Institute of Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, Den Dolech 2, Eindhoven 5612AZ, The Netherlands; E-Mails: (K.P.-M.); (M.H.S.); (A.C.)
| | - Alexander Colditz
- Laboratory of Chemical Biology and Institute of Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, Den Dolech 2, Eindhoven 5612AZ, The Netherlands; E-Mails: (K.P.-M.); (M.H.S.); (A.C.)
| | - Luc Brunsveld
- Laboratory of Chemical Biology and Institute of Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, Den Dolech 2, Eindhoven 5612AZ, The Netherlands; E-Mails: (K.P.-M.); (M.H.S.); (A.C.)
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