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Lu Y, Li W, Fan Y, Cheng L, Tang Y, Sun H. Recent Advances in Bonding Regulation of Metalloporphyrin-Modified Carbon-Based Catalysts for Accelerating Energy Electrocatalytic Applications. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2406180. [PMID: 39385633 DOI: 10.1002/smll.202406180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Revised: 09/20/2024] [Indexed: 10/12/2024]
Abstract
Metalloporphyrins modified carbon-based materials, owing to the excellent acid-base resistance, optimal electron transfer rates, and superior catalytic performance, have shown great potential in energy electrocatalysis. Recently, numerous efforts have concentrated on employing carbon-based substrates as platforms to anchor metalloporphyrins, thereby fabricating a diverse array of composite catalysts tailored for assorted electrocatalytic processes. However, the interplay through bonding regulation of metalloporphyrins with carbon materials and the resultant enhancement in catalyst performance remains inadequately elucidated. Gaining an in-depth comprehension of the synergistic interactions between metalloporphyrins and carbon-based materials within the realm of electrocatalysis is imperative for advancing the development of innovative composite catalysts. Herein, the review systematically classifies the binding modes (i.e., covalent grafting and non-covalent interactions) between carbon-based materials and metalloporphyrins, followed by a discussion on the structural characteristics and applications of metalloporphyrins supported on various carbon-based substrates, categorized according to their binding modes. Additionally, this review underscores the principal challenges and emerging opportunities for carbon-supported metalloporphyrin composite catalysts, offering both inspiration and methodological insights for researchers involved in the design and application of these advanced catalytic systems.
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Affiliation(s)
- Yang Lu
- School of Chemistry and Materials Science, Jiangsu Key Laboratory of New Power Batteries, Jiangsu Collaborative Innovation Centre of Biomedical Functional Materials, Nanjing Normal University, Nanjing, 210023, P. R. China
| | - Wenyan Li
- School of Chemistry and Materials Science, Jiangsu Key Laboratory of New Power Batteries, Jiangsu Collaborative Innovation Centre of Biomedical Functional Materials, Nanjing Normal University, Nanjing, 210023, P. R. China
| | - Yiyi Fan
- School of Chemistry and Materials Science, Jiangsu Key Laboratory of New Power Batteries, Jiangsu Collaborative Innovation Centre of Biomedical Functional Materials, Nanjing Normal University, Nanjing, 210023, P. R. China
| | - Lei Cheng
- School of Chemistry and Materials Science, Jiangsu Key Laboratory of New Power Batteries, Jiangsu Collaborative Innovation Centre of Biomedical Functional Materials, Nanjing Normal University, Nanjing, 210023, P. R. China
| | - Yawen Tang
- School of Chemistry and Materials Science, Jiangsu Key Laboratory of New Power Batteries, Jiangsu Collaborative Innovation Centre of Biomedical Functional Materials, Nanjing Normal University, Nanjing, 210023, P. R. China
| | - Hanjun Sun
- School of Chemistry and Materials Science, Jiangsu Key Laboratory of New Power Batteries, Jiangsu Collaborative Innovation Centre of Biomedical Functional Materials, Nanjing Normal University, Nanjing, 210023, P. R. China
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2
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George SL, Zhao L, Wang Z, Xue Z, Zhao L. Iron Porphyrin-Based Composites for Electrocatalytic Oxygen Reduction Reactions. Molecules 2024; 29:5655. [PMID: 39683814 DOI: 10.3390/molecules29235655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2024] [Revised: 11/26/2024] [Accepted: 11/27/2024] [Indexed: 12/18/2024] Open
Abstract
The oxygen reduction reaction (ORR) is one of the most critical reactions in energy conversion systems, and it facilitates the efficient conversion of chemical energy into electrical energy, which is necessary for modern technology. Developing efficient and cost-effective catalysts for ORRs is crucial for advancing and effectively applying renewable energy technologies such as fuel cells, metal-air batteries, and electrochemical sensors. In recent years, iron porphyrin-based composites have emerged as ideal catalysts for facilitating effective ORRs due to their unique structural characteristics, abundance, advances in synthesis, and excellent catalytic properties, which mimic natural enzymatic systems. However, many articles have focused on reviewing porphyrin-based frameworks or metalloporphyrins in general, necessitating research specifically addressing iron porphyrin. This review discusses iron porphyrin as an effective catalyst in ORRs. It provides a comprehensive knowledge of the application of iron porphyrin-based composites for electrocatalytic ORRs, focusing on their properties, synthesis, structural integration with conductive supports, catalytic mechanism, and efficacy. This review also discusses the challenges of applying iron porphyrin-based composites and provides recommendations to address these challenges.
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Affiliation(s)
| | - Linkai Zhao
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Ziyi Wang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Zhaoli Xue
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Long Zhao
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China
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3
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Wang Y, Zhao L, Ji G, He C, Liu S, Duan C. Vanadium(V IV)-Porphyrin-Based Metal-Organic Frameworks for Synergistic Bimetallic Activation of Inert C(sp 3)-H Bonds. ACS APPLIED MATERIALS & INTERFACES 2022; 14:2794-2804. [PMID: 34989552 DOI: 10.1021/acsami.1c20420] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Activation and selective functionalization of inert C(sp3)-H bonds remain one of the most challenging tasks in current synthetic chemistry. Herein, by decorating vanadium(VIV)-porphyrin into metal-organic frameworks (MOFs) to stabilize the active tertbutyl peroxide radical, we reported a new approach to accomplish inert C(sp3)-H bond activation by a synergistic bimetallic strategy via a hydrogen atom transfer process under mild conditions. The stabilized peroxide radical by VIV-porphyrin-based MOFs abstracted a hydrogen atom from the inert C(sp3)-H bonds for direct oxidization transformation utilizing environmentally friendly oxygen. Taking advantage of the high stability of Zr6 clusters, the new Zr-MOF was recyclable six times without a conversion efficiency decrease. From this foundation, {Mn3(μ3-O)} cluster nodes with potential unsaturated coordinated sites were introduced into MOFs to replace Zr6 clusters, realizing the pre-activation of substrates through the interaction between Mn nodes and substrates. The synergistic bimetallic activation effect of VIV-porphyrin and Mn nodes dramatically promoted the conversion efficiency and product selectivity for inert C(sp3)-H bond functionalization.
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Affiliation(s)
- Yefei Wang
- State Key Laboratory of Fine Chemicals, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Liang Zhao
- State Key Laboratory of Fine Chemicals, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Guanfeng Ji
- State Key Laboratory of Fine Chemicals, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Cheng He
- State Key Laboratory of Fine Chemicals, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Songtao Liu
- State Key Laboratory of Fine Chemicals, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Chunying Duan
- State Key Laboratory of Fine Chemicals, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
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4
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Mohammed TP, Sankaralingam M. Reactivities of high valent manganese-oxo porphyrins in aqueous medium. Tetrahedron 2022. [DOI: 10.1016/j.tet.2021.132483] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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5
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Mamardashvili G, Mamardashvili N, Koifman O. Macrocyclic Receptors for Identification and Selective Binding of Substrates of Different Nature. Molecules 2021; 26:molecules26175292. [PMID: 34500725 PMCID: PMC8433985 DOI: 10.3390/molecules26175292] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 08/04/2021] [Accepted: 08/18/2021] [Indexed: 02/05/2023] Open
Abstract
Molecular recognition of host/guest molecules represents the basis of many biological processes and phenomena. Enzymatic catalysis and inhibition, immunological response, reproduction of genetic information, biological regulatory functions, the effects of drugs, and ion transfer-all these processes include the stage of structure recognition during complexation. The goal of this review is to solicit and publish the latest advances in the design and sensing and binding abilities of porphyrin-based heterotopic receptors with well-defined geometries, the recognition ability of which is realized due to ionic, H-bridge, charge transfer, hydrophobic, and hydrophilic interactions. The dissection of the considered low-energy processes at the molecular scale expands our capabilities in the development of effective systems for controlled recognition, selective delivery, and prolonged release of substrates of different natures (including drugs) to their sites of functioning.
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Zhou XY, Xu C, Guo PP, Sun WL, Wei PJ, Liu JG. Axial Ligand Coordination Tuning of the Electrocatalytic Activity of Iron Porphyrin Electrografted onto Carbon Nanotubes for the Oxygen Reduction Reaction. Chemistry 2021; 27:9898-9904. [PMID: 33876876 DOI: 10.1002/chem.202100736] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Indexed: 11/12/2022]
Abstract
The oxygen reduction reaction (ORR) is essential in many life processes and energy conversion systems. It is desirable to design transition metal molecular catalysts inspired by enzymatic oxygen activation/reduction processes as an alternative to noble-metal-Pt-based ORR electrocatalysts, especially in view point of fuel cell commercialization. We have fabricated bio-inspired molecular catalysts electrografted onto multiwalled carbon nanotubes (MWCNTs) in which 5,10,15,20-tetra(pentafluorophenyl) iron porphyrin (iron porphyrin FeF20 TPP) is coordinated with covalently electrografted axial ligands varying from thiophene to imidazole on the MWCNTs' surface. The catalysts' electrocatalytic activity varied with the axial coordination environment (i. e., S-thiophene, N-imidazole, and O-carboxylate); the imidazole-coordinated catalyst MWCNTs-Im-FeF20 TPP exhibited the highest ORR activity among the prepared catalysts. When MWCNT-Im-FeF20 TPP was loaded onto the cathode of a zinc-air battery, an open-cell voltage (OCV) of 1.35 V and a maximum power density (Pmax ) of 110 mW cm-2 were achieved; this was higher than those of MWCNTs-Thi-FeF20 TPP (OCV=1.30 V, Pmax =100 mW cm-2 ) and MWCNTs-Ox-FeF20 TPP (OCV=1.28 V, Pmax =86 mW cm-2 ) and comparable with a commercial Pt/C catalyst (OCV=1.45 V, Pmax =120 mW cm-2 ) under similar experimental conditions. This study provides a time-saving method to prepare covalently immobilized molecular electrocatalysts on carbon-based materials with structure-performance correlation that is also applicable to the design of other electrografted catalysts for energy conversion.
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Affiliation(s)
- Xin-You Zhou
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, P. R. China
| | - Chao Xu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, P. R. China
| | - Peng-Peng Guo
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, P. R. China
| | - Wei-Li Sun
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, P. R. China
| | - Ping-Jie Wei
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, P. R. China
| | - Jin-Gang Liu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular Engineering, East China University of Science and Technology, Shanghai, 200237, P. R. China
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7
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Nasibipour M, Safaei E, Wojtczak A, Jagličić Z, Galindo A, Masoumpour MS. A biradical oxo-molybdenum complex containing semiquinone and o-aminophenol benzoxazole-based ligands. RSC Adv 2020; 10:40853-40866. [PMID: 35519205 PMCID: PMC9059147 DOI: 10.1039/d0ra06351g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 10/16/2020] [Indexed: 12/27/2022] Open
Abstract
We report a new mononuclear molybdenum(iv) complex, MoOLBISLSQ, in which LSQ (2,4-di-tert-butyl o-semibenzoquinone ligand) has been prepared from the reaction of the o-iminosemibenzoquinone form of a tridentate non-innocent benzoxazole ligand, LBIS, and MoO2(acac)2. The complex was characterized by X-ray crystallography, elemental analysis, IR and UV-vis spectroscopy and magnetic susceptibility measurements. The crystal structure of MoOLBISLSQ revealed a distorted octahedral geometry around the metal centre, surrounded by one O and two N atoms of LBIS and two O atoms of LSQ. The effective magnetic moment (μ eff) of MoOLBISLSQ decreased from 2.36 to 0.2 μB in the temperature range of 290 to 2 K, indicating a singlet ground state caused by antiferromagnetic coupling between the metal and ligand centred unpaired electrons. Also, the latter led to the EPR silence of the complex. Cyclic voltammetry (CV) studies indicate both ligand and metal-centered redox processes. MoOLBISLSQ was applied as a catalyst for the oxidative cleavage of cyclohexene to adipic acid and selective oxidation of sulfides to sulfones with aqueous hydrogen peroxide.
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Affiliation(s)
- Mina Nasibipour
- Department of Chemistry, College of Sciences, Shiraz University 71454 Shiraz Iran
| | - Elham Safaei
- Department of Chemistry, College of Sciences, Shiraz University 71454 Shiraz Iran
| | - Andrzej Wojtczak
- Nicolaus Copernicus University, Faculty of Chemistry 87-100 Torun Poland
| | - Zvonko Jagličić
- Institute of Mathematics, Physics and Mechanics & Faculty of Civil and Geodetic Engineering, University of Ljubljana Jadranska 19 Ljubljana Slovenia
| | - Agustín Galindo
- Departamento de Química Inorgánica, Facultad de Química, Universidad de Sevilla Aptdo. 1203 41071 Sevilla Spain
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8
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Hubbard CD, Chatterjee D, Oszajca M, Polaczek J, Impert O, Chrzanowska M, Katafias A, Puchta R, van Eldik R. Inorganic reaction mechanisms. A personal journey. Dalton Trans 2020; 49:4599-4659. [PMID: 32162632 DOI: 10.1039/c9dt04620h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
This review covers highlights of the work performed in the van Eldik group on inorganic reaction mechanisms over the past two decades in the form of a personal journey. Topics that are covered include, from NO to HNO chemistry, peroxide activation in model porphyrin and enzymatic systems, the wonder-world of RuIII(edta) chemistry, redox chemistry of Ru(iii) complexes, Ru(ii) polypyridyl complexes and their application, relevant physicochemical properties and reaction mechanisms in ionic liquids, and mechanistic insight from computational chemistry. In each of these sections, typical examples of mechanistic studies are presented in reference to related work reported in the literature.
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Affiliation(s)
- Colin D Hubbard
- Department of Chemistry and Pharmacy, University of Erlangen-Nuremberg, Egerlandstr. 1, 91058 Erlangen, Germany.
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9
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Fang Y, Yadav I, Osterloh WR, Chaudhri N, Sankar M, Kadish KM. Electrochemistry of Tri‐substituted Porphyrins with
β
‐Appended Ethyl Acetoacetate and Acetylacetone in Neutral and Basic Nonaqueous Solvents. ChemElectroChem 2020. [DOI: 10.1002/celc.202000191] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yuanyuan Fang
- School of Chemistry and Chemical Engineering Jiangsu University Zhenjiang 212013 China
- Department of Chemistry University of Houston Houston, TX 77204-5003 USA
| | - Inderpal Yadav
- Department of Chemistry Indian Institute of Technology Roorkee Roorkee 247667 India
| | - W. Ryan Osterloh
- Department of Chemistry University of Houston Houston, TX 77204-5003 USA
| | - Nivedita Chaudhri
- Department of Chemistry Indian Institute of Technology Roorkee Roorkee 247667 India
| | - Muniappan Sankar
- Department of Chemistry Indian Institute of Technology Roorkee Roorkee 247667 India
| | - Karl M. Kadish
- Department of Chemistry University of Houston Houston, TX 77204-5003 USA
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10
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Park H, Lee D. Ligand Taxonomy for Bioinorganic Modeling of Dioxygen-Activating Non-Heme Iron Enzymes. Chemistry 2020; 26:5916-5926. [PMID: 31909506 DOI: 10.1002/chem.201904975] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 01/04/2020] [Indexed: 12/15/2022]
Abstract
Novel functions emerge from novel structures. To develop efficient catalytic systems for challenging chemical transformations, chemists often seek inspirations from enzymatic catalysis. A large number of iron complexes supported by nitrogen-rich multidentate ligands have thus been developed to mimic oxo-transfer reactivity of dioxygen-activating metalloenzymes. Such efforts have significantly advanced our understanding of the reaction mechanisms by trapping key intermediates and elucidating their geometric and electronic properties. Critical to the success of this biomimetic approach is the design and synthesis of elaborate ligand systems to balance the thermodynamic stability, structural adaptability, and chemical reactivity. In this Concept article, representative design strategies for biomimetic atom-transfer chemistry are discussed from the perspectives of "ligand builders". Emphasis is placed on how the primary coordination sphere is constructed, and how it can be elaborated further by rational design for desired functions.
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Affiliation(s)
- Hyunchang Park
- Department of Chemistry, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Korea
| | - Dongwhan Lee
- Department of Chemistry, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, Korea
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11
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Ambient O2 is a switch between [1-electron/1-radical] vs. [2–electron] oxidative catalytic path in Fe-Phthalocyanines. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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12
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Kim H, Rogler PJ, Sharma SK, Schaefer AW, Solomon EI, Karlin KD. Heme-Fe III Superoxide, Peroxide and Hydroperoxide Thermodynamic Relationships: Fe III-O 2•- Complex H-Atom Abstraction Reactivity. J Am Chem Soc 2020; 142:3104-3116. [PMID: 31913628 PMCID: PMC7034651 DOI: 10.1021/jacs.9b12571] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Establishing redox and thermodynamic relationships between metal-ion-bound O2 and its reduced (and protonated) derivatives is critically important for a full understanding of (bio)chemical processes involving dioxygen processing. Here, a ferric heme peroxide complex, [(F8)FeIII-(O22-)]- (P) (F8 = tetrakis(2,6-difluorophenyl)porphyrinate), and a superoxide complex, [(F8)FeIII-(O2•-)] (S), are shown to be redox interconvertible. Using Cr(η-C6H6)2, an equilibrium state where S and P are present is established in tetrahydrofuran (THF) at -80 °C, allowing determination of the reduction potential of S as -1.17 V vs Fc+/0. P could be protonated with 2,6-lutidinium triflate, yielding the low-spin ferric hydroperoxide species, [(F8)FeIII-(OOH)] (HP). Partial conversion of HP back to P using a derivatized phosphazene base gave a P/HP equilibrium mixture, leading to the determination of pKa = 28.8 for HP (THF, -80 °C). With the measured reduction potential and pKa, the O-H bond dissociation free energy (BDFE) of hydroperoxide species HP was calculated to be 73.5 kcal/mol, employing the thermodynamic square scheme and Bordwell relationship. This calculated O-H BDFE of HP, in fact, lines up with an experimental demonstration of the oxidizing ability of S via hydrogen atom transfer (HAT) from TEMPO-H (2,2,6,6-tetramethylpiperdine-N-hydroxide, BDFE = 66.5 kcal/mol in THF), forming the hydroperoxide species HP and TEMPO radical. Kinetic studies carried out with TEMPO-H(D) reveal second-order behavior, kH = 0.5, kD = 0.08 M-1 s-1 (THF, -80 °C); thus, the hydrogen/deuterium kinetic isotope effect (KIE) = 6, consistent with H-atom abstraction by S being the rate-determining step. This appears to be the first case where experimentally derived thermodynamics lead to a ferric heme hydroperoxide OO-H BDFE determination, that FeIII-OOH species being formed via HAT reactivity of the partner ferric heme superoxide complex.
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Affiliation(s)
- Hyun Kim
- Department of Chemistry , Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Patrick J Rogler
- Department of Chemistry , Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Savita K Sharma
- Department of Chemistry , Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Andrew W Schaefer
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Edward I Solomon
- Department of Chemistry , Stanford University , Stanford , California 94305 , United States
| | - Kenneth D Karlin
- Department of Chemistry , Johns Hopkins University , Baltimore , Maryland 21218 , United States
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13
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Lee CM, Sankaralingam M, Chuo CH, Tseng TH, Chen PPY, Chiang MH, Li XX, Lee YM, Nam W. A Mn(iv)-peroxo complex in the reactions with proton donors. Dalton Trans 2019; 48:5203-5213. [PMID: 30941378 DOI: 10.1039/c9dt00649d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Protons play an important role in promoting O-O or M-O bond cleavage of metal-peroxo complexes. Treatment of side-on O2-bound [PPN][MnIV(TMSPS3)(O2)] (1, PPN = bis(triphenylphosphine)iminium and TMSPS3H3 = 2,2',2''-trimercapto-3,3',3''-tris(trimethylsilyl)triphenylphosphine) with perchloric acid (HClO4) in the presence of PR3 (R = phenyl or p-tolyl) results in the formation of neutral five-coordinate MnIII(OPR3)(TMSPS3) complexes (R = phenyl, 2a; p-tolyl, 2b), which are confirmed by X-ray crystallography. Isotope labelling experiments demonstrate that the oxygen atom in the phosphine oxide product derives from the peroxo ligand of 1. Reactions of 1 with weak proton donors, such as phenylthiol, phenol, substituted phenol and methanol, are also investigated to explore the reactivity of the MnIV-peroxo complex, leading to the isolation of a series of five-coordinate [MnIII(L)(TMSPS3)]- complexes (L = phenylthiolate, phenolate or methoxide). Mechanistic aspects of the reactions of the MnIV-peroxo complex with proton donors are discussed as well.
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Affiliation(s)
- Chien-Ming Lee
- Department of Applied Science, National Taitung University, Jhihben Campus: 369, Sec. 2, University Rd., Taitung 950, Taiwan.
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14
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Zhao Y, Yu G, Wang F, Wei P, Liu J. Bioinspired Transition‐Metal Complexes as Electrocatalysts for the Oxygen Reduction Reaction. Chemistry 2018; 25:3726-3739. [DOI: 10.1002/chem.201803764] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Indexed: 01/27/2023]
Affiliation(s)
- Ye‐Min Zhao
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Guo‐Qiang Yu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Fei‐Fei Wang
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Ping‐Jie Wei
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
| | - Jin‐Gang Liu
- Key Laboratory for Advanced Materials, School of Chemistry & Molecular EngineeringEast China University of Science and Technology Shanghai 200237 P. R. China
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15
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Adam SM, Wijeratne GB, Rogler PJ, Diaz DE, Quist DA, Liu JJ, Karlin KD. Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function. Chem Rev 2018; 118:10840-11022. [PMID: 30372042 PMCID: PMC6360144 DOI: 10.1021/acs.chemrev.8b00074] [Citation(s) in RCA: 156] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Heme-copper oxidases (HCOs) are terminal enzymes on the mitochondrial or bacterial respiratory electron transport chain, which utilize a unique heterobinuclear active site to catalyze the 4H+/4e- reduction of dioxygen to water. This process involves a proton-coupled electron transfer (PCET) from a tyrosine (phenolic) residue and additional redox events coupled to transmembrane proton pumping and ATP synthesis. Given that HCOs are large, complex, membrane-bound enzymes, bioinspired synthetic model chemistry is a promising approach to better understand heme-Cu-mediated dioxygen reduction, including the details of proton and electron movements. This review encompasses important aspects of heme-O2 and copper-O2 (bio)chemistries as they relate to the design and interpretation of small molecule model systems and provides perspectives from fundamental coordination chemistry, which can be applied to the understanding of HCO activity. We focus on recent advancements from studies of heme-Cu models, evaluating experimental and computational results, which highlight important fundamental structure-function relationships. Finally, we provide an outlook for future potential contributions from synthetic inorganic chemistry and discuss their implications with relevance to biological O2-reduction.
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Affiliation(s)
- Suzanne M. Adam
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Gayan B. Wijeratne
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Patrick J. Rogler
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Daniel E. Diaz
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David A. Quist
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Jeffrey J. Liu
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Kenneth D. Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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16
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Bhunia S, Rana A, Roy P, Martin DJ, Pegis ML, Roy B, Dey A. Rational Design of Mononuclear Iron Porphyrins for Facile and Selective 4e -/4H + O 2 Reduction: Activation of O-O Bond by 2nd Sphere Hydrogen Bonding. J Am Chem Soc 2018; 140:9444-9457. [PMID: 29975839 DOI: 10.1021/jacs.8b02983] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Facile and selective 4e-/4H+ electrochemical reduction of O2 to H2O in aqueous medium has been a sought-after goal for several decades. Elegant but synthetically demanding cytochrome c oxidase mimics have demonstrated selective 4e-/4H+ electrochemical O2 reduction to H2O is possible with rate constants as fast as 105 M-1 s-1 under heterogeneous conditions in aqueous media. Over the past few years, in situ mechanistic investigations on iron porphyrin complexes adsorbed on electrodes have revealed that the rate and selectivity of this multielectron and multiproton process is governed by the reactivity of a ferric hydroperoxide intermediate. The barrier of O-O bond cleavage determines the overall rate of O2 reduction and the site of protonation determines the selectivity. In this report, a series of mononuclear iron porphyrin complexes are rationally designed to achieve efficient O-O bond activation and site-selective proton transfer to effect facile and selective electrochemical reduction of O2 to water. Indeed, these crystallographically characterized complexes accomplish facile and selective reduction of O2 with rate constants >107 M-1 s-1 while retaining >95% selectivity when adsorbed on electrode surfaces (EPG) in water. These oxygen reduction reaction rate constants are 2 orders of magnitude faster than all known heme/Cu complexes and these complexes retain >90% selectivity even under rate determining electron transfer conditions that generally can only be achieved by installing additional redox active groups in the catalyst.
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Affiliation(s)
- Sarmistha Bhunia
- Department of Inorganic Chemistry , Indian Association for the Cultivation of Science , 2A Raja SC Mullick Road , Kolkata , West Bengal 700032 , India
| | - Atanu Rana
- Department of Inorganic Chemistry , Indian Association for the Cultivation of Science , 2A Raja SC Mullick Road , Kolkata , West Bengal 700032 , India
| | - Pronay Roy
- Department of Inorganic Chemistry , Indian Association for the Cultivation of Science , 2A Raja SC Mullick Road , Kolkata , West Bengal 700032 , India
| | - Daniel J Martin
- Department of Chemistry , Yale University , New Haven , Connecticut 06520 , United States
| | - Michael L Pegis
- Department of Chemistry , Yale University , New Haven , Connecticut 06520 , United States.,Department of Chemistry , Massachusetts Institute of Technology , Cambridge , Massachusetts 02139 , United States
| | - Bijan Roy
- Department of Inorganic Chemistry , Indian Association for the Cultivation of Science , 2A Raja SC Mullick Road , Kolkata , West Bengal 700032 , India
| | - Abhishek Dey
- Department of Inorganic Chemistry , Indian Association for the Cultivation of Science , 2A Raja SC Mullick Road , Kolkata , West Bengal 700032 , India
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17
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Huang X, Groves JT. Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins. Chem Rev 2018; 118:2491-2553. [PMID: 29286645 PMCID: PMC5855008 DOI: 10.1021/acs.chemrev.7b00373] [Citation(s) in RCA: 619] [Impact Index Per Article: 88.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Indexed: 12/20/2022]
Abstract
As a result of the adaptation of life to an aerobic environment, nature has evolved a panoply of metalloproteins for oxidative metabolism and protection against reactive oxygen species. Despite the diverse structures and functions of these proteins, they share common mechanistic grounds. An open-shell transition metal like iron or copper is employed to interact with O2 and its derived intermediates such as hydrogen peroxide to afford a variety of metal-oxygen intermediates. These reactive intermediates, including metal-superoxo, -(hydro)peroxo, and high-valent metal-oxo species, are the basis for the various biological functions of O2-utilizing metalloproteins. Collectively, these processes are called oxygen activation. Much of our understanding of the reactivity of these reactive intermediates has come from the study of heme-containing proteins and related metalloporphyrin compounds. These studies not only have deepened our understanding of various functions of heme proteins, such as O2 storage and transport, degradation of reactive oxygen species, redox signaling, and biological oxygenation, etc., but also have driven the development of bioinorganic chemistry and biomimetic catalysis. In this review, we survey the range of O2 activation processes mediated by heme proteins and model compounds with a focus on recent progress in the characterization and reactivity of important iron-oxygen intermediates. Representative reactions initiated by these reactive intermediates as well as some context from prior decades will also be presented. We will discuss the fundamental mechanistic features of these transformations and delineate the underlying structural and electronic factors that contribute to the spectrum of reactivities that has been observed in nature as well as those that have been invented using these paradigms. Given the recent developments in biocatalysis for non-natural chemistries and the renaissance of radical chemistry in organic synthesis, we envision that new enzymatic and synthetic transformations will emerge based on the radical processes mediated by metalloproteins and their synthetic analogs.
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Affiliation(s)
- Xiongyi Huang
- Department
of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department
of Chemistry, California Institute of Technology, Pasadena, California 91125, United States
| | - John T. Groves
- Department
of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
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18
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Bioinspired versus Enzymatic Oxidation of Some Homologous Thionine Dyes in the Presence of Immobilized Metalloporphyrin Catalysts and Ligninolytic Enzymes. Int J Mol Sci 2017; 18:ijms18122553. [PMID: 29182586 PMCID: PMC5751156 DOI: 10.3390/ijms18122553] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2017] [Revised: 11/22/2017] [Accepted: 11/23/2017] [Indexed: 12/24/2022] Open
Abstract
Thionines are recalcitrant and polluting textile dyes presenting various degrees of N-methylation. In this paper, a complete series of homologous thionines was used as the substrates for oxidation in the presence of a bioinspired commercial iron-porphyrin immobilized on to imidazole- and pyridine-functionalized fumed silica, to emulate the active site of ligninolytic peroxidases. The obtained catalytic adducts showed a remarkable ability to catalyze thionine dye oxidation in the presence of different oxidants such as potassium monopersulfate and hydrogen peroxide. Different oxidation patterns were obtained and mechanistically discussed, in comparison with those observed in the presence of some ligninolytic oxidizing enzymes.
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19
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Zhang W, Lai W, Cao R. Energy-Related Small Molecule Activation Reactions: Oxygen Reduction and Hydrogen and Oxygen Evolution Reactions Catalyzed by Porphyrin- and Corrole-Based Systems. Chem Rev 2016; 117:3717-3797. [PMID: 28222601 DOI: 10.1021/acs.chemrev.6b00299] [Citation(s) in RCA: 711] [Impact Index Per Article: 79.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Globally increasing energy demands and environmental concerns related to the use of fossil fuels have stimulated extensive research to identify new energy systems and economies that are sustainable, clean, low cost, and environmentally benign. Hydrogen generation from solar-driven water splitting is a promising strategy to store solar energy in chemical bonds. The subsequent combustion of hydrogen in fuel cells produces electric energy, and the only exhaust is water. These two reactions compose an ideal process to provide clean and sustainable energy. In such a process, a hydrogen evolution reaction (HER), an oxygen evolution reaction (OER) during water splitting, and an oxygen reduction reaction (ORR) as a fuel cell cathodic reaction are key steps that affect the efficiency of the overall energy conversion. Catalysts play key roles in this process by improving the kinetics of these reactions. Porphyrin-based and corrole-based systems are versatile and can efficiently catalyze the ORR, OER, and HER. Because of the significance of energy-related small molecule activation, this review covers recent progress in hydrogen evolution, oxygen evolution, and oxygen reduction reactions catalyzed by porphyrins and corroles.
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Affiliation(s)
- Wei Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University , Xi'an 710119, China
| | - Wenzhen Lai
- Department of Chemistry, Renmin University of China , Beijing 100872, China
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University , Xi'an 710119, China.,Department of Chemistry, Renmin University of China , Beijing 100872, China
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20
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Maurya MR, Sarkar B, Avecilla F, Correia I. Vanadium Complexes Derived from Acetyl Pyrazolone and Hydrazides: Structure, Reactivity, Peroxidase Mimicry and Efficient Catalytic Activity for the Oxidation of 1-Phenylethanol. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600427] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Mannar R. Maurya
- Department of Chemistry; Indian Institute of Technology Roorkee; 247667 Roorkee India
| | - Bithika Sarkar
- Department of Chemistry; Indian Institute of Technology Roorkee; 247667 Roorkee India
| | - Fernando Avecilla
- Departamento de Química Fundamental; Universidade da Coruña; Campus de A Zapateira 15071 A Coruña Spain
| | - Isabel Correia
- Centro de Química Estrutural; Instituto Superior Técnico; Universidade de Lisboa; Av. Rovisco Pais 1 1049-001 Lisbon Portugal
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21
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Ohta T, Liu JG, Nagaraju P, Ogura T, Naruta Y. A cryo-generated ferrous-superoxo porphyrin: EPR, resonance Raman and DFT studies. Chem Commun (Camb) 2016; 51:12407-10. [PMID: 26144219 DOI: 10.1039/c5cc03520a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The resonance Raman analysis of cryo-generated ferrous-superoxy heme has been performed for the first time, and its structure and the reaction mechanism are rationalized by DFT calculations. The presence of another electronic tautomer of ferrous-superoxy heme is predicted computationally.
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Affiliation(s)
- Takehiro Ohta
- Picobiology Institute, Graduate School of Life Science, University of Hyogo, Hyogo 679-5148, Japan.
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22
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Nagaraju P, Ohta T, Liu JG, Ogura T, Naruta Y. The secondary coordination sphere controlled reactivity of a ferric-superoxo heme: unexpected conversion to a ferric hydroperoxo intermediate by reaction with a high-spin ferrous heme. Chem Commun (Camb) 2016; 52:7213-6. [PMID: 27105471 DOI: 10.1039/c6cc02162j] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A bio-inspired heme complex involving both a proton donor and an axial imidazole ligand reduces the activation energy for the formation of a ferric hydroperoxo intermediate. A high-spin ferrous heme is shown to be capable of reducing its superoxy species to generate a ferric hydroperoxo intermediate for the first time.
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Affiliation(s)
- Perumandla Nagaraju
- Institute of Science and Technology Research, Chubu University, Kasugai, Aichi 487-8501, Japan.
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23
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Faponle AS, Banse F, de Visser SP. Arene activation by a nonheme iron(III)-hydroperoxo complex: pathways leading to phenol and ketone products. J Biol Inorg Chem 2016; 21:453-62. [PMID: 27099221 DOI: 10.1007/s00775-016-1354-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 04/11/2016] [Indexed: 11/28/2022]
Abstract
Iron(III)-hydroperoxo complexes are found in various nonheme iron enzymes as catalytic cycle intermediates; however, little is known on their catalytic properties. The recent work of Banse and co-workers on a biomimetic nonheme iron(III)-hydroperoxo complex provided evidence of its involvement in reactivity with arenes. This contrasts the behavior of heme iron(III)-hydroperoxo complexes that are known to be sluggish oxidants. To gain insight into the reaction mechanism of the biomimetic iron(III)-hydroperoxo complex with arenes, we performed a computational (density functional theory) study. The calculations show that iron(III)-hydroperoxo reacts with substrates via low free energies of activation that should be accessible at room temperature. Moreover, a dominant ketone reaction product is observed as primary products rather than the thermodynamically more stable phenols. These product distributions are analyzed and the calculations show that charge interaction between the iron(III)-hydroxo group and the substrate in the intermediate state pushes the transferring proton to the meta-carbon atom of the substrate and guides the selectivity of ketone formation. These studies show that the relative ratio of ketone versus phenol as primary products can be affected by external interactions of the oxidant with the substrate. Moreover, iron(III)-hydroperoxo complexes are shown to selectively give ketone products, whereas iron(IV)-oxo complexes will react with arenes to form phenols instead.
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Affiliation(s)
- Abayomi S Faponle
- Manchester Institute of Biotechnology, School of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK
| | - Frédéric Banse
- Institut de Chimie Moleculaire et des Materiaux d'Orsay, Université Paris Sud, Université Paris Saclay, CNRS, 91405, Orsay Cedex, France.
| | - Sam P de Visser
- Manchester Institute of Biotechnology, School of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
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24
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Oszajca M, Franke A, Brindell M, Stochel G, van Eldik R. Redox cycling in the activation of peroxides by iron porphyrin and manganese complexes. ‘Catching’ catalytic active intermediates. Coord Chem Rev 2016. [DOI: 10.1016/j.ccr.2015.01.013] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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25
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Chahal MK, Sankar M. Switching between porphyrin, porphodimethene and porphyrinogen using cyanide and fluoride ions mimicking volatile molecular memory and the ‘NOR’ logic gate. Dalton Trans 2016; 45:16404-16412. [DOI: 10.1039/c6dt02506d] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
β-Substituted porphyrins were developed as a quantitatively operating “lab-on-a-molecule” for the detection of F−and CN−ions, by switching between porphyrin, porphodimethene and porphyrinogen along with distinct solution colour changes and reversibility.
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Affiliation(s)
- Mandeep K. Chahal
- Department of Chemistry
- Indian Institute of Technology Roorkee
- Roorkee 247667
- India
| | - Muniappan Sankar
- Department of Chemistry
- Indian Institute of Technology Roorkee
- Roorkee 247667
- India
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26
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Quesne MG, Borowski T, de Visser SP. Quantum Mechanics/Molecular Mechanics Modeling of Enzymatic Processes: Caveats and Breakthroughs. Chemistry 2015; 22:2562-81. [PMID: 26696271 DOI: 10.1002/chem.201503802] [Citation(s) in RCA: 114] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2015] [Indexed: 11/08/2022]
Abstract
Nature has developed large groups of enzymatic catalysts with the aim to transfer substrates into useful products, which enables biosystems to perform all their natural functions. As such, all biochemical processes in our body (we drink, we eat, we breath, we sleep, etc.) are governed by enzymes. One of the problems associated with research on biocatalysts is that they react so fast that details of their reaction mechanisms cannot be obtained with experimental work. In recent years, major advances in computational hardware and software have been made and now large (bio)chemical systems can be studied using accurate computational techniques. One such technique is the quantum mechanics/molecular mechanics (QM/MM) technique, which has gained major momentum in recent years. Unfortunately, it is not a black-box method that is easily applied, but requires careful set-up procedures. In this work we give an overview on the technical difficulties and caveats of QM/MM and discuss work-protocols developed in our groups for running successful QM/MM calculations.
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Affiliation(s)
- Matthew G Quesne
- Jerzy Haber Institute of Catalysis and Surface Chemistry of the, Polish Academy of Sciences, Niezapominajek 8, 30-239, Krakow, Poland. .,Manchester Institute of Biotechnology and, School of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
| | - Tomasz Borowski
- Jerzy Haber Institute of Catalysis and Surface Chemistry of the, Polish Academy of Sciences, Niezapominajek 8, 30-239, Krakow, Poland.
| | - Sam P de Visser
- Manchester Institute of Biotechnology and, School of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.
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27
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Jaladanki CK, Taxak N, Varikoti RA, Bharatam PV. Toxicity Originating from Thiophene Containing Drugs: Exploring the Mechanism using Quantum Chemical Methods. Chem Res Toxicol 2015; 28:2364-76. [PMID: 26574776 DOI: 10.1021/acs.chemrestox.5b00364] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Drug metabolism of thiophene containing substrates by cytochrome P450s (CYP450) leads to toxic side effects, for example, nephrotoxicity (suprofen, ticlopidine), hepatotoxicity (tienilic acid), thrombotic thrombocytopenic purpura (clopidogrel), and aplastic anemia (ticlopidine). The origin of toxicity in these cases has been attributed to two different CYP450 mediated metabolic reactions: S-oxidation and epoxidation. In this work, the molecular level details of the bioinorganic chemistry associated with the generation of these competitive reactions are reported. Density functional theory was utilized (i) to explore the molecular mechanism for S-oxidation and epoxidation using the radical cationic center Cpd I [(iron(IV)-oxo-heme porphine system with SH(-) as the axial ligand, to mimic CYP450s] as the model oxidant, (ii) to establish the 3D structures of the reactants, transition states, and products on both the metabolic pathways, and (iii) to examine the potential energy (PE) profile for both the pathways to determine the energetically preferred toxic metabolite formation. The energy barrier required for S-oxidation was observed to be 14.75 kcal/mol as compared to that of the epoxidation reaction (13.23 kcal/mol) on the doublet PE surface of Cpd I. The formation of the epoxide metabolite was found to be highly exothermic (-23.24 kcal/mol), as compared to S-oxidation (-8.08 kcal/mol). Hence, on a relative scale the epoxidation process was observed to be thermodynamically and kinetically more favorable. The energy profiles associated with the reactions of the S-oxide and epoxide toxic metabolites were also explored. This study helps in understanding the CYP450-catalyzed toxic reactions of drugs containing the thiophene ring at the atomic level.
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Affiliation(s)
- Chaitanya K Jaladanki
- Department of Medicinal Chemistry and ‡Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research (NIPER) , Sector-67, S. A. S. Nagar (Mohali), 160 062 Punjab, India
| | - Nikhil Taxak
- Department of Medicinal Chemistry and ‡Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research (NIPER) , Sector-67, S. A. S. Nagar (Mohali), 160 062 Punjab, India
| | - Rohith A Varikoti
- Department of Medicinal Chemistry and ‡Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research (NIPER) , Sector-67, S. A. S. Nagar (Mohali), 160 062 Punjab, India
| | - Prasad V Bharatam
- Department of Medicinal Chemistry and ‡Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research (NIPER) , Sector-67, S. A. S. Nagar (Mohali), 160 062 Punjab, India
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28
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Kumar R, Yadav P, Kumar A, Sankar M. Facile Synthesis and Electrochemical Studies of Diethoxyphosphorylphenyl-substituted Porphyrin and Its Metal Complexes. CHEM LETT 2015. [DOI: 10.1246/cl.150233] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Ravi Kumar
- Department of Chemistry, Indian Institute of Technology Roorkee
| | - Pinky Yadav
- Department of Chemistry, Indian Institute of Technology Roorkee
| | - Amit Kumar
- Department of Chemistry, Indian Institute of Technology Roorkee
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29
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İşci Ü, Faponle AS, Afanasiev P, Albrieux F, Briois V, Ahsen V, Dumoulin F, Sorokin AB, de Visser SP. Site-selective formation of an iron(iv)-oxo species at the more electron-rich iron atom of heteroleptic μ-nitrido diiron phthalocyanines. Chem Sci 2015; 6:5063-5075. [PMID: 30155008 PMCID: PMC6088558 DOI: 10.1039/c5sc01811k] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2015] [Accepted: 06/16/2015] [Indexed: 11/21/2022] Open
Abstract
A combination of MS and computation on μ-nitrido bridged diiron complexes reveals H2O2 binding to the complex and generates an oxidant capable of oxidizing methane.
Iron(iv)–oxo species have been identified as the active intermediates in key enzymatic processes, and their catalytic properties are strongly affected by the equatorial and axial ligands bound to the metal, but details of these effects are still unresolved. In our aim to create better and more efficient oxidants of H-atom abstraction reactions, we have investigated a unique heteroleptic diiron phthalocyanine complex. We propose a novel intramolecular approach to determine the structural features that govern the catalytic activity of iron(iv)–oxo sites. Heteroleptic μ-nitrido diiron phthalocyanine complexes having an unsubstituted phthalocyanine (Pc1) and a phthalocyanine ligand substituted with electron-withdrawing alkylsulfonyl groups (PcSO2R) were prepared and characterized. A reaction with terminal oxidants gives two isomeric iron(iv)–oxo and iron(iii)–hydroperoxo species with abundances dependent on the equatorial ligand. Cryospray ionization mass spectrometry (CSI-MS) characterized both hydroperoxo and diiron oxo species in the presence of H2O2. When m-CPBA was used as the oxidant, the formation of diiron oxo species (PcSO2R)FeNFe(Pc1)
Created by potrace 1.16, written by Peter Selinger 2001-2019
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O was also evidenced. Sufficient amounts of these transient species were trapped in the quadrupole region of the mass-spectrometer and underwent a CID-MS/MS fragmentation. Analyses of fragmentation patterns indicated a preferential formation of hydroperoxo and oxo moieties at more electron-rich iron sites of both heteroleptic μ-nitrido complexes. DFT calculations show that both isomers are close in energy. However, the analysis of the iron(iii)–hydroperoxo bond strength reveals major differences for the (Pc1)FeN(PcSO2R)FeIIIOOH system as compared to (PcSO2R)FeN(Pc1)FeIIIOOH system, and, hence binding of a terminal oxidant will be preferentially on more electron-rich sides. Subsequent kinetics studies showed that these oxidants are able to even oxidize methane to formic acid efficiently.
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Affiliation(s)
- Ümit İşci
- Gebze Technical University , Department of Chemistry , P.O. Box 141, Gebze , 41400 Kocaeli , Turkey .
| | - Abayomi S Faponle
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical Science , The University of Manchester , 131 Princess Street , Manchester M1 7DN , UK .
| | - Pavel Afanasiev
- Institut de Recherches sur la Catalyse et l'Environnement de Lyon (IRCELYON) , UMR 5256 , CNRS-Université Lyon 1 , 2, av. A. Einstein , 69626 Villeurbanne Cedex , France .
| | - Florian Albrieux
- Centre Commun de Spectrométrie de Masse UMR 5246 , CNRS-Université Claude Bernard Lyon 1 , Université de Lyon , Bâtiment Curien , 43, bd du 11 Novembre , 69622 Villeurbanne Cedex , France
| | - Valérie Briois
- Synchrotron Soleil , L'orme des merisiers, St-Aubin , 91192 Gif-sur-Yvette , France
| | - Vefa Ahsen
- Gebze Technical University , Department of Chemistry , P.O. Box 141, Gebze , 41400 Kocaeli , Turkey .
| | - Fabienne Dumoulin
- Gebze Technical University , Department of Chemistry , P.O. Box 141, Gebze , 41400 Kocaeli , Turkey .
| | - Alexander B Sorokin
- Institut de Recherches sur la Catalyse et l'Environnement de Lyon (IRCELYON) , UMR 5256 , CNRS-Université Lyon 1 , 2, av. A. Einstein , 69626 Villeurbanne Cedex , France .
| | - Sam P de Visser
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical Science , The University of Manchester , 131 Princess Street , Manchester M1 7DN , UK .
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30
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Reuillard B, Gentil S, Carrière M, Le Goff A, Cosnier S. Biomimetic versus enzymatic high-potential electrocatalytic reduction of hydrogen peroxide on a functionalized carbon nanotube electrode. Chem Sci 2015; 6:5139-5143. [PMID: 29142732 PMCID: PMC5666682 DOI: 10.1039/c5sc01473e] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Accepted: 05/22/2015] [Indexed: 11/29/2022] Open
Abstract
We report the non-covalent functionalization of a multi-walled carbon nanotube (MWCNT) electrode with a biomimetic model of the horseradish peroxidase (HRP) active site.
We report the non-covalent functionalization of a multi-walled carbon nanotube (MWCNT) electrode with a biomimetic model of the horseradish peroxidase (HRP) active site. By modifying the MWCNT electrode surface with imidazole-modified polypyrrole, a new biomimetic complex of HRP was synthesized on the MWCNT sidewalls via the coordination of imidazole (Im) to the metal centre of iron protoporphyrin IX, affording (Im)(PP)FeIII. Compared to the pi-stacking of non-coordinated (PP)FeIII on a MWCNT electrode, the (Im)(PP)FeIII-modified MWCNT electrode exhibits higher electrocatalytic activity with an Imax = 0.52 mA cm–2 for the reduction of H2O2, accompanied by a high onset potential of 0.43 V vs. Ag/AgCl. The performances of these novel surface-confined HRP mimics were compared to those of a MWCNT electrode modified by HRP. Although the enzyme electrode displays a higher electrocatalytic activity towards H2O2 reduction, the (Im)(PP)FeIII-modified MWCNT electrode exhibits a markedly higher operational stability, retaining 63% of its initial activity after one month.
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Affiliation(s)
- Bertrand Reuillard
- Univ. Grenoble Alpes , DCM UMR 5250 , F-38000 Grenoble , France and CNRS , DCM UMR 5250 , F-38000 Grenoble , France .
| | - Solène Gentil
- Univ. Grenoble Alpes , DCM UMR 5250 , F-38000 Grenoble , France and CNRS , DCM UMR 5250 , F-38000 Grenoble , France .
| | - Marie Carrière
- Univ. Grenoble Alpes , DCM UMR 5250 , F-38000 Grenoble , France and CNRS , DCM UMR 5250 , F-38000 Grenoble , France .
| | - Alan Le Goff
- Univ. Grenoble Alpes , DCM UMR 5250 , F-38000 Grenoble , France and CNRS , DCM UMR 5250 , F-38000 Grenoble , France .
| | - Serge Cosnier
- Univ. Grenoble Alpes , DCM UMR 5250 , F-38000 Grenoble , France and CNRS , DCM UMR 5250 , F-38000 Grenoble , France .
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Fu H, Cao M, She Y, Sun Z, Yu Y. Electronic effects of the substituent on the dioxygen-activating abilities of substituted iron tetraphenylporphyrins: a theoretical study. J Mol Model 2015; 21:92. [DOI: 10.1007/s00894-015-2619-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2014] [Accepted: 02/15/2015] [Indexed: 10/23/2022]
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32
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Faponle AS, Quesne MG, Sastri CV, Banse F, de Visser SP. Differences and comparisons of the properties and reactivities of iron(III)-hydroperoxo complexes with saturated coordination sphere. Chemistry 2015; 21:1221-36. [PMID: 25399782 PMCID: PMC4316188 DOI: 10.1002/chem.201404918] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Indexed: 11/06/2022]
Abstract
Heme and nonheme monoxygenases and dioxygenases catalyze important oxygen atom transfer reactions to substrates in the body. It is now well established that the cytochrome P450 enzymes react through the formation of a high-valent iron(IV)-oxo heme cation radical. Its precursor in the catalytic cycle, the iron(III)-hydroperoxo complex, was tested for catalytic activity and found to be a sluggish oxidant of hydroxylation, epoxidation and sulfoxidation reactions. In a recent twist of events, evidence has emerged of several nonheme iron(III)-hydroperoxo complexes that appear to react with substrates via oxygen atom transfer processes. Although it was not clear from these studies whether the iron(III)-hydroperoxo reacted directly with substrates or that an initial O-O bond cleavage preceded the reaction. Clearly, the catalytic activity of heme and nonheme iron(III)-hydroperoxo complexes is substantially different, but the origins of this are still poorly understood and warrant a detailed analysis. In this work, an extensive computational analysis of aromatic hydroxylation by biomimetic nonheme and heme iron systems is presented, starting from an iron(III)-hydroperoxo complex with pentadentate ligand system (L5(2)). Direct C-O bond formation by an iron(III)-hydroperoxo complex is investigated, as well as the initial heterolytic and homolytic bond cleavage of the hydroperoxo group. The calculations show that [(L5(2))Fe(III)(OOH)](2+) should be able to initiate an aromatic hydroxylation process, although a low-energy homolytic cleavage pathway is only slightly higher in energy. A detailed valence bond and thermochemical analysis rationalizes the differences in chemical reactivity of heme and nonheme iron(III)-hydroperoxo and show that the main reason for this particular nonheme complex to be reactive comes from the fact that they homolytically split the O-O bond, whereas a heterolytic O-O bond breaking in heme iron(III)-hydroperoxo is found.
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Affiliation(s)
- Abayomi S Faponle
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical Science, The University of Manchester131 Princess Street, Manchester M1 7DN (UK) E-mail:
| | - Matthew G Quesne
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical Science, The University of Manchester131 Princess Street, Manchester M1 7DN (UK) E-mail:
| | - Chivukula V Sastri
- Department of Chemistry, Indian Institute of Technology Guwahati781039, Assam (India)
| | - Frédéric Banse
- Institut de Chimie Moleculaire et des Materiaux d'Orsay, Laboratoire de Chimie Inorganique, Université Paris-Sud11 91405 Orsay Cedex (France) E-mail:
| | - Sam P de Visser
- Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical Science, The University of Manchester131 Princess Street, Manchester M1 7DN (UK) E-mail:
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33
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Chahal MK, Sankar M. Porphyrin chemodosimeters: synthesis, electrochemical redox properties and selective ‘naked-eye’ detection of cyanide ions. RSC Adv 2015. [DOI: 10.1039/c5ra19847j] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
β-Dicyanovinyl substituted porphyrins have been synthesized and utilized as chemodosimeters for ratiometric and colorimetric sensing of cyanide ions in CH3CN and H2O/CH3CN mixture.
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Affiliation(s)
- Mandeep K. Chahal
- Department of Chemistry
- Indian Institute of Technology Roorkee
- Roorkee-247667
- India
| | - Muniappan Sankar
- Department of Chemistry
- Indian Institute of Technology Roorkee
- Roorkee-247667
- India
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34
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Xi YT, Wei PJ, Wang RC, Liu JG. Bio-inspired multinuclear copper complexes covalently immobilized on reduced graphene oxide as efficient electrocatalysts for the oxygen reduction reaction. Chem Commun (Camb) 2015; 51:7455-8. [DOI: 10.1039/c5cc00963d] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A bio-inspired multinuclear copper complex covalently immobilized on graphene exhibited high ORR activity and long-term stability in alkaline media.
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Affiliation(s)
- Yue-Ting Xi
- Key Laboratory for Advanced Materials of MOE & Department of Chemistry
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Ping-Jie Wei
- Key Laboratory for Advanced Materials of MOE & Department of Chemistry
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Ru-Chun Wang
- Key Laboratory for Advanced Materials of MOE & Department of Chemistry
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Jin-Gang Liu
- Key Laboratory for Advanced Materials of MOE & Department of Chemistry
- East China University of Science and Technology
- Shanghai
- P. R. China
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35
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Kumar R, Sankar M. Synthesis, Spectral, and Electrochemical Studies of Electronically Tunable β-Substituted Porphyrins with Mixed Substituent Pattern. Inorg Chem 2014; 53:12706-19. [DOI: 10.1021/ic501259g] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Ravi Kumar
- Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee - 247667, India
| | - Muniappan Sankar
- Department of Chemistry, Indian Institute of Technology Roorkee, Roorkee - 247667, India
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36
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Lian P, Wei D. An application of QM/MM simulation: the second protonation of cytochrome P450. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2014; 827:311-24. [PMID: 25387972 DOI: 10.1007/978-94-017-9245-5_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
The multiscale model strategy, hybrid quantum mechanics and molecular mechanics (QM/MM), has become more and more prevalent in the theoretical study of enzymatic reactions. It combines both the efficiency of the Newtonian molecular calculations and the accuracy of the quantum mechanical methods. Simulation using QM/MM multiscale model may be one of the most promising approaches that could further narrow the gap between the theoretical models and the real problems. It is capable of dealing with not only the conformational changes of biomacromolecules, but also the catalytic reactions. Herein, we reviewed some of our recent work to demonstrate the application of the QM/MM simulations in exploring the enzymatic reactions.
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Affiliation(s)
- Peng Lian
- State Key Laboratory of Microbial Metabolism, College of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
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37
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Zucca P, Rescigno A, Rinaldi AC, Sanjust E. Biomimetic metalloporphines and metalloporphyrins as potential tools for delignification: Molecular mechanisms and application perspectives. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.molcata.2013.09.010] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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38
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Wei PJ, Yu GQ, Naruta Y, Liu JG. Covalent Grafting of Carbon Nanotubes with a Biomimetic Heme Model Compound To Enhance Oxygen Reduction Reactions. Angew Chem Int Ed Engl 2014; 53:6659-63. [DOI: 10.1002/anie.201403133] [Citation(s) in RCA: 192] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2014] [Revised: 04/15/2014] [Indexed: 12/28/2022]
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39
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Wei PJ, Yu GQ, Naruta Y, Liu JG. Covalent Grafting of Carbon Nanotubes with a Biomimetic Heme Model Compound To Enhance Oxygen Reduction Reactions. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201403133] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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40
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Mikhalitsyna EA, Tyurin VS, Khrustalev VN, Lonin IS, Beletskaya IP. Palladium-catalyzed amination of meso-(bromophenyl)porphyrins with diamines and azamacrocycles. Dalton Trans 2014; 43:3563-75. [DOI: 10.1039/c3dt52685b] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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41
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Lian P, Li J, Wang DQ, Wei DQ. Car–Parrinello Molecular Dynamics/Molecular Mechanics (CPMD/MM) Simulation Study of Coupling and Uncoupling Mechanisms of Cytochrome P450cam. J Phys Chem B 2013; 117:7849-56. [DOI: 10.1021/jp312107r] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Peng Lian
- State Key
Laboratory of Microbial
Metabolism, and College of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, China 200240
| | - Jue Li
- State Key
Laboratory of Microbial
Metabolism, and College of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, China 200240
| | - Dong-Qi Wang
- Laboratory of Physical Chemistry, Swiss Federal Institute of Technology, ETH, CH-8093
Zurich, Switzerland
| | - Dong-Qing Wei
- State Key
Laboratory of Microbial
Metabolism, and College of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, China 200240
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42
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Ohta T, Liu JG, Naruta Y. Resonance Raman characterization of mononuclear heme-peroxo intermediate models. Coord Chem Rev 2013. [DOI: 10.1016/j.ccr.2012.05.009] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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43
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Intrinsic properties and reactivities of mononuclear nonheme iron–oxygen complexes bearing the tetramethylcyclam ligand. Coord Chem Rev 2013. [DOI: 10.1016/j.ccr.2012.06.002] [Citation(s) in RCA: 137] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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44
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Ohta T, Liu JG, Saito M, Kobayashi Y, Yoda Y, Seto M, Naruta Y. Axial Ligand Effects on Vibrational Dynamics of Iron in Heme Carbonyl Studied by Nuclear Resonance Vibrational Spectroscopy. J Phys Chem B 2012; 116:13831-8. [DOI: 10.1021/jp304398g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Takehiro Ohta
- Institute
for Materials Chemistry
and Engineering and International Institute for Carbon-Neutral Energy
Research (WPI-I2CNER), Kyushu University, Fukuoka 812-8581, Japan
- JST, ACT-C, Saitama 332-0012,
Japan
| | - Jin-Gang Liu
- Institute
for Materials Chemistry
and Engineering and International Institute for Carbon-Neutral Energy
Research (WPI-I2CNER), Kyushu University, Fukuoka 812-8581, Japan
- Department of Chemistry, East China University of Science and Technology, 130
Meilong Rd, 200237, Shanghai, P. R. China
| | - Makina Saito
- Research Reactor Institute, Kyoto University, Osaka 590-0494, Japan
| | - Yasuhiro Kobayashi
- Research Reactor Institute, Kyoto University, Osaka 590-0494, Japan
- CREST, Japan Science and Technology Agency, Saitama 332-0012, Japan
| | - Yoshitaka Yoda
- Japan Synchrotron Radiation Research Institute, Hyogo 679-5198, Japan
- CREST, Japan Science and Technology Agency, Saitama 332-0012, Japan
| | - Makoto Seto
- Research Reactor Institute, Kyoto University, Osaka 590-0494, Japan
- Japan Atomic Energy Agency, Hyogo 679-5148, Japan
- CREST, Japan Science and Technology Agency, Saitama 332-0012, Japan
| | - Yoshinori Naruta
- Institute
for Materials Chemistry
and Engineering and International Institute for Carbon-Neutral Energy
Research (WPI-I2CNER), Kyushu University, Fukuoka 812-8581, Japan
- JST, ACT-C, Saitama 332-0012,
Japan
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45
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Spectroscopic observation of iodosylarene metalloporphyrin adducts and manganese(V)-oxo porphyrin species in a cytochrome P450 analogue. Nat Commun 2012; 3:1190. [DOI: 10.1038/ncomms2196] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2012] [Accepted: 10/10/2012] [Indexed: 11/08/2022] Open
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46
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Vinodh M, Alipour FH, Mohamod AA, Al-Azemi TF. Molecular assemblies of porphyrins and macrocyclic receptors: recent developments in their synthesis and applications. Molecules 2012; 17:11763-99. [PMID: 23047480 PMCID: PMC6268645 DOI: 10.3390/molecules171011763] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Revised: 09/08/2012] [Accepted: 09/11/2012] [Indexed: 11/17/2022] Open
Abstract
Metalloporphyrins which form the core of many bioenzymes and natural light harvesting or electron transport systems, exhibit a variety of selective functional properties depending on the state and surroundings with which they exist in biological systems. The specificity and ease with which they function in each of their bio-functions appear to be largely governed by the nature and disposition of the protein globule around the porphyrin reaction center. Synthetic porphyrin frameworks confined within or around a pre-organized molecular entity like the protein network in natural systems have attracted considerable attraction, especially in the field of biomimetic reactions. At the same time a large number of macrocyclic oligomers such as calixarenes, resorcinarenes, spherands, cyclodextrins and crown ethers have been investigated in detail as efficient molecular receptors. These molecular receptors are synthetic host molecules with enclosed interiors, which are designed three dimensionally to ensure strong and precise molecular encapsulation/recognition. Due to their complex structures, enclosed guest molecules reside in an environment isolated from the outside and as a consequence, physical properties and chemical reactions specific to that environment in these guest species can be identified. The facile incorporation of such molecular receptors into the highly photoactive and catalytically efficient porphyrin framework allows for convenient design of useful molecular systems with unique structural and functional properties. Such systems have provided over the years attractive model systems for the study of various biological and chemical processes, and the design of new materials and molecular devices. This review focuses on the recent developments in the synthesis of porphyrin assemblies associated with cyclodextrins, calixarenes and resorcinarenes and their potential applications in the fields of molecular encapsulation/recognition, and chemical catalysis.
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Affiliation(s)
| | | | | | - Talal F. Al-Azemi
- Chemistry Department, Kuwait University, P.O. Box 5969, Safat 13060, Kuwait
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47
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Enantioselective water-soluble iron–porphyrin-catalyzed epoxidation with aqueous hydrogen peroxide and hydroxylation with iodobenzene diacetate. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.05.014] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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48
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Franke A, Fertinger C, van Eldik R. Axial Ligand and Spin-State Influence on the Formation and Reactivity of Hydroperoxo-Iron(III) Porphyrin Complexes. Chemistry 2012; 18:6935-49. [DOI: 10.1002/chem.201103036] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2011] [Revised: 12/29/2011] [Indexed: 11/12/2022]
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49
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Zhang CP, Chen QY, Guo Y, Xiao JC, Gu YC. Progress in fluoroalkylation of organic compounds via sulfinatodehalogenation initiation system. Chem Soc Rev 2012; 41:4536-59. [PMID: 22511113 DOI: 10.1039/c2cs15352a] [Citation(s) in RCA: 167] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The sulfinatodehalogenation reaction represents one of the most important methodologies to incorporate fluorine into organic molecules. Using inexpensive sulfur-containing reactants such as Na(2)S(2)O(4) under mild conditions, per- and polyfluoroalkyl halides (R(F)X, X = Br, I, CCl(3)) can be transformed smoothly into the corresponding sulfinate salts. This method is also used for the perfluoroalkylation of alkenes, dienes, alkynes and aromatics. Notably, after 1998, the sulfinatodehalogenation of perfluoroalkyl chlorides (R(F)Cl) has been realized by using dimethylsulfoxide (DMSO) as a solvent instead of CH(3)CN/H(2)O in the Na(2)S(2)O(4)/NaHCO(3) initiation system. Perfluoroalkyl chlorides, ethyl chlorofluoroacetates and chlorodifluoroacetates, and even nonfluorinated compounds, such as ethyl chloro- or dichloroacetates and chloroform, were either converted into the corresponding sulfinate salts or alkylated alkenes, alkynes and aromatics (including porphyrins). The sulfinatodehalogenation reaction has remarkable advantages. With the increasing demands to utilize the unique properties of fluorine and fluorinated functional groups in medicinal, agricultural and material sciences, we believe that there will continue to be useful developments in sulfinatodehalogenation chemistry and it will be applied more widely in the future.
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Affiliation(s)
- Cheng-Pan Zhang
- Key Laboratory of Organofluorine Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai 200032, China
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50
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Thibon A, Jollet V, Ribal C, Sénéchal-David K, Billon L, Sorokin AB, Banse F. Hydroxylation of Aromatics with the Help of a Non-Haem FeOOH: A Mechanistic Study under Single-Turnover and Catalytic Conditions. Chemistry 2012; 18:2715-24. [DOI: 10.1002/chem.201102252] [Citation(s) in RCA: 87] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2011] [Indexed: 11/12/2022]
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