1
|
Frontera A. Noble Gas Bonding Interactions Involving Xenon Oxides and Fluorides. Molecules 2020; 25:molecules25153419. [PMID: 32731517 PMCID: PMC7435756 DOI: 10.3390/molecules25153419] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 07/26/2020] [Accepted: 07/27/2020] [Indexed: 12/18/2022] Open
Abstract
Noble gas (or aerogen) bond (NgB) can be outlined as the attractive interaction between an electron-rich atom or group of atoms and any element of Group-18 acting as an electron acceptor. The IUPAC already recommended systematic nomenclature for the interactions of groups 17 and 16 (halogen and chalcogen bonds, respectively). Investigations dealing with noncovalent interactions involving main group elements (acting as Lewis acids) have rapidly grown in recent years. They are becoming acting players in essential fields such as crystal engineering, supramolecular chemistry, and catalysis. For obvious reasons, the works devoted to the study of noncovalent Ng-bonding interactions are significantly less abundant than halogen, chalcogen, pnictogen, and tetrel bonding. Nevertheless, in this short review, relevant theoretical and experimental investigations on noncovalent interactions involving Xenon are emphasized. Several theoretical works have described the physical nature of NgB and their interplay with other noncovalent interactions, which are discussed herein. Moreover, exploring the Cambridge Structural Database (CSD) and Inorganic Crystal Structure Database (ICSD), it is demonstrated that NgB interactions are crucial in governing the X-ray packing of xenon derivatives. Concretely, special attention is given to xenon fluorides and xenon oxides, since they exhibit a strong tendency to establish NgBs.
Collapse
Affiliation(s)
- Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Crta de valldemossa km 7.5, 07122 Palma de Mallorca (Baleares), Spain
| |
Collapse
|
2
|
Gomila RM, Frontera A. Covalent and Non-covalent Noble Gas Bonding Interactions in XeF n Derivatives ( n = 2-6): A Combined Theoretical and ICSD Analysis. Front Chem 2020; 8:395. [PMID: 32435634 PMCID: PMC7218167 DOI: 10.3389/fchem.2020.00395] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 04/15/2020] [Indexed: 11/13/2022] Open
Abstract
A noble gas bond (also known in the literature as aerogen bond) can be defined as the attractive interaction between any element of group-18 acting as a Lewis acid and any electron rich atom of group of atoms, thus following the IUPAC recommendation available for similar π,σ-hole interactions involving elements of groups 17 (halogens) and 16 (chalcogens). A significant difference between noble gas bonding (NgB) and halogen (HaB) or chalcogen (ChB) bonding is that whilst the former is scarcely found in the literature, HaB and ChB are very common and their applications in important fields like catalysis, biochemistry or crystal engineering have exponentially grown in the last decade. This article combines theory and experiment to highlight the importance of non-covalent NgBs in the solid state of several xenon fluorides [XeFn]m+ were the central oxidation state of Xe varies from +2 to +6 and the number of fluorine atoms varies from n = 2 to 6. The compounds with an odd number of fluorine atoms (n = 3 and 5) are cationic (m = 1). The Inorganic Crystal Structural Database (ICSD) strongly evidences the relevance of NgBs in the solid state structures of xenon derivatives. The ability of Xe compounds to participate in π,σ-hole interactions has been studied using different types of electron donors (Lewis bases and anions) using DFT calculations (PBE1PBE-D3/def2-TZVP) and the molecular electrostatic potential (MEP) surfaces.
Collapse
Affiliation(s)
- Rosa M Gomila
- Serveis Cientificotècnics, Universitat de les Illes Balears, Palma, Spain
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Palma, Spain
| |
Collapse
|
3
|
Levason W, Monzittu FM, Reid G. Coordination chemistry and applications of medium/high oxidation state metal and non-metal fluoride and oxide-fluoride complexes with neutral donor ligands. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.04.005] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
|
4
|
Marczenko KM, Mercier HPA, Schrobilgen GJ. A Stable Crown Ether Complex with a Noble-Gas Compound. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806640] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | | | - Gary J. Schrobilgen
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
| |
Collapse
|
5
|
Marczenko KM, Mercier HPA, Schrobilgen GJ. A Stable Crown Ether Complex with a Noble-Gas Compound. Angew Chem Int Ed Engl 2018; 57:12448-12452. [PMID: 29953704 DOI: 10.1002/anie.201806640] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Indexed: 11/10/2022]
Abstract
Crown ethers have been known for over 50 years, but no example of a complex between a noble-gas compound and a crown ether or another polydentate ligand had previously been reported. Xenon trioxide is shown to react with 15-crown-5 to form the kinetically stable (CH2 CH2 O)5 XeO3 adduct, which, in marked contrast with solid XeO3 , does not detonate when mechanically shocked. The crystal structure shows that the five oxygen atoms of the crown ether are coordinated to the xenon atom of XeO3 . The gas-phase Wiberg bond valences and indices and the empirical bond valences indicate that the Xe- - -Ocrown bonds are predominantly electrostatic and are consistent with σ-hole bonding. Mappings of the electrostatic potential (EP) onto the Hirshfeld surfaces of XeO3 and 15-crown-5 in (CH2 CH2 O)5 XeO3 and a detailed examination of the molecular electrostatic potential surface (MEPS) of XeO3 and (CH2 CH2 O)5 reveal regions of negative EP on the oxygen atoms of (CH2 CH2 O)5 and regions of high positive EP on the xenon atom, which are also in accordance with σ-hole interactions.
Collapse
Affiliation(s)
| | - Hélène P A Mercier
- Department of Chemistry, McMaster University, Hamilton, Ontario, L8S 4M1, Canada
| | - Gary J Schrobilgen
- Department of Chemistry, McMaster University, Hamilton, Ontario, L8S 4M1, Canada
| |
Collapse
|
6
|
Goettel JT, Mercier HP, Schrobilgen GJ. XeO3 adducts of pyridine, 4-dimethylaminopyridine, and their pyridinium salts. J Fluor Chem 2018. [DOI: 10.1016/j.jfluchem.2018.03.004] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
7
|
Gawrilow M, Beckers H, Riedel S, Cheng L. Matrix-Isolation and Quantum-Chemical Analysis of the C 3v Conformer of XeF 6, XeOF 4, and Their Acetonitrile Adducts. J Phys Chem A 2017; 122:119-129. [PMID: 29220184 DOI: 10.1021/acs.jpca.7b09902] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A joint experimental-computational study of the molecular structure and vibrational spectra of the XeF6 molecule is reported. The vibrational frequencies, intensities, and in particular the isotopic frequency shifts of the vibrational spectra for 129XeF6 and 136XeF6 isotopologues recorded in the neon matrix agree very well with those obtained from relativistic coupled-cluster calculations for XeF6 in the C3v structure, thereby strongly supporting the observation of the C3v conformer of the XeF6 molecule in the neon matrix. A C3v transition state connecting the C3v and Oh local minima is located computationally. The calculated barrier of 220 cm-1 between the C3v minima and the transition state corroborates the experimental observation of the C3v conformer and the absence of the Oh conformer in solid noble gas matrices. For comparison matrix-isolation spectra have also been recorded and analyzed for the 129XeOF4 and the 136XeOF4 isotopologues. The matrix-isolation complexation shifts obtained for the XeF6·NCCH3 relative to those of free matrix isolated XeF6 and CH3CN are in good agreement with those reported for crystalline XeF6·NCCH3.
Collapse
Affiliation(s)
- Maxim Gawrilow
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin , Fabeckstr. 34-36, 14195 Berlin, Germany
| | - Helmut Beckers
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin , Fabeckstr. 34-36, 14195 Berlin, Germany
| | - Sebastian Riedel
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin , Fabeckstr. 34-36, 14195 Berlin, Germany
| | - Lan Cheng
- Department of Chemistry, The Johns Hopkins University , Baltimore, Maryland 21218, United States
| |
Collapse
|
8
|
Goettel JT, Haensch VG, Schrobilgen GJ. Stable Chloro- and Bromoxenate Cage Anions; [X3(XeO3)3]3– and [X4(XeO3)4]4– (X = Cl or Br). J Am Chem Soc 2017; 139:8725-8733. [DOI: 10.1021/jacs.7b04067] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James T. Goettel
- Department of Chemistry, McMaster University, Hamilton, Ontario L8S
4M1, Canada
| | - Veit G. Haensch
- Department of Chemistry, McMaster University, Hamilton, Ontario L8S
4M1, Canada
| | - Gary J. Schrobilgen
- Department of Chemistry, McMaster University, Hamilton, Ontario L8S
4M1, Canada
| |
Collapse
|
9
|
Lozinšek M, Mercier HPA, Brock DS, Žemva B, Schrobilgen GJ. Coordination of KrF2
to a Naked Metal Cation, Mg2+. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201611534] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Matic Lozinšek
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
- Department of Inorganic Chemistry and Technology; “Jožef Stefan” Institute; Jamova 39 1000 Ljubljana Slovenia
| | | | - David S. Brock
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
| | - Boris Žemva
- Department of Inorganic Chemistry and Technology; “Jožef Stefan” Institute; Jamova 39 1000 Ljubljana Slovenia
| | - Gary J. Schrobilgen
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
| |
Collapse
|
10
|
Lozinšek M, Mercier HPA, Brock DS, Žemva B, Schrobilgen GJ. Coordination of KrF2
to a Naked Metal Cation, Mg2+. Angew Chem Int Ed Engl 2017; 56:6251-6254. [DOI: 10.1002/anie.201611534] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2016] [Indexed: 11/06/2022]
Affiliation(s)
- Matic Lozinšek
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
- Department of Inorganic Chemistry and Technology; “Jožef Stefan” Institute; Jamova 39 1000 Ljubljana Slovenia
| | | | - David S. Brock
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
| | - Boris Žemva
- Department of Inorganic Chemistry and Technology; “Jožef Stefan” Institute; Jamova 39 1000 Ljubljana Slovenia
| | - Gary J. Schrobilgen
- Department of Chemistry; McMaster University; Hamilton Ontario L8S 4M1 Canada
| |
Collapse
|
11
|
Kirshenboim O, Kozuch S. How to Twist, Split and Warp a σ-Hole with Hypervalent Halogens. J Phys Chem A 2016; 120:9431-9445. [PMID: 27783513 DOI: 10.1021/acs.jpca.6b07894] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Halogen bonds (XB) are no longer newcomers in the chemistry family. However, XB in hypervalent halogens has not been thoroughly studied. We provide a molecular orbital explanation of the shape and strength of XBs in hypervalent halogens and other species, focusing on the charge transfer and electrostatic aspects of these bonds. Our results show that σ-holes (and subsequently the XBs associated with them) can be easily divided and bent by the influence of equatorial substituents. The inductive effect of both the equatorial and axial groups can affect these distortions, but also the angle between the equatorial ligands has a large influence on the shape of the σ-holes and the molecular orbitals acting as electron acceptor. Although the observation of these warped XB can be hindered by other noncovalent interactions, they may be ubiquitous in crystal structures of hypervalent species, where multiple XB can appear as secondary interactions on each halogen. We propose what can be considered the archetypal hypervalent halogen donor (a pincer type iodosodilactone) and a Lewis dot structure that includes the σ-holes.
Collapse
Affiliation(s)
- Omer Kirshenboim
- Department of Chemistry, Ben-Gurion University of the Negev , Beer-Sheva 841051, Israel
| | - Sebastian Kozuch
- Department of Chemistry, Ben-Gurion University of the Negev , Beer-Sheva 841051, Israel
| |
Collapse
|
12
|
Goettel JT, Matsumoto K, Mercier HPA, Schrobilgen GJ. Syntheses and Structures of Xenon Trioxide Alkylnitrile Adducts. Angew Chem Int Ed Engl 2016; 55:13780-13783. [DOI: 10.1002/anie.201607583] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Revised: 08/29/2016] [Indexed: 11/08/2022]
Affiliation(s)
- James T. Goettel
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | - Kazuhiko Matsumoto
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | | | | |
Collapse
|
13
|
Goettel JT, Matsumoto K, Mercier HPA, Schrobilgen GJ. Syntheses and Structures of Xenon Trioxide Alkylnitrile Adducts. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607583] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- James T. Goettel
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | - Kazuhiko Matsumoto
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | | | | |
Collapse
|
14
|
DeBackere JR, Bortolus MR, Schrobilgen GJ. Synthesis and Characterization of [XeOXe](2+) in the Adduct-Cation Salt, [CH3 CN- - -XeOXe- - -NCCH3 ][AsF6 ]2. Angew Chem Int Ed Engl 2016; 55:11917-20. [PMID: 27560618 DOI: 10.1002/anie.201606851] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Indexed: 11/10/2022]
Abstract
Acetonitrile and [FXeOXe- - -FXeF][AsF6 ] react at -60 °C in anhydrous HF (aHF) to form the CH3 CN adduct of the previously unknown [XeOXe](2+) cation. The low-temperature X-ray structure of [CH3 CN- - -XeOXe- - -NCCH3 ][AsF6 ]2 exhibits a well-isolated adduct-cation that has among the shortest Xe-N distances obtained for an sp-hybridized nitrogen base adducted to xenon. The Raman spectrum was fully assigned by comparison with the calculated vibrational frequencies and with the aid of (18) O-enrichment studies. Natural bond orbital (NBO), atoms in molecules (AIM), electron localization function (ELF), and molecular electrostatic potential surface (MEPS) analyses show that the Xe-O bonds are semi-ionic whereas the Xe-N bonds may be described as strong electrostatic (σ-hole) interactions.
Collapse
Affiliation(s)
- John R DeBackere
- Department of Chemistry, McMaster University, Hamilton, ON, L8S 4M1, Canada
| | - Mark R Bortolus
- Department of Chemistry, McMaster University, Hamilton, ON, L8S 4M1, Canada
| | - Gary J Schrobilgen
- Department of Chemistry, McMaster University, Hamilton, ON, L8S 4M1, Canada.
| |
Collapse
|
15
|
DeBackere JR, Bortolus MR, Schrobilgen GJ. Synthesis and Characterization of [XeOXe]2+in the Adduct-Cation Salt, [CH3CN- - -XeOXe- - -NCCH3][AsF6]2. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201606851] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- John R. DeBackere
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | - Mark R. Bortolus
- Department of Chemistry; McMaster University; Hamilton ON L8S 4M1 Canada
| | | |
Collapse
|
16
|
Zhang G, Li H, Weinhold F, Chen D. 3c/4e -type long-bonding competes with ω-bonding in noble-gas hydrides HNgY (Ng = He, Ne, Ar, Kr, Xe, Rn; Y = F, Cl, Br, I): a NBO/NRT perspective. Phys Chem Chem Phys 2016; 18:8015-26. [DOI: 10.1039/c5cp07965a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Novel resonance bonding for the HNgY molecule is demonstrated based on natural resonance theory analyses. Ng/Y affects the ω-bonding vs. long-bonding propensity in each of the HNgY molecules.
Collapse
Affiliation(s)
- Guiqiu Zhang
- College of Chemistry
- Chemical Engineering and Materials Science
- Collaborative Innovation Center of Functionalized Probes for Chemical Imaging
- Key Laboratory of Molecular and Nano Probes
- Ministry of Education
| | - Hong Li
- College of Chemistry
- Chemical Engineering and Materials Science
- Collaborative Innovation Center of Functionalized Probes for Chemical Imaging
- Key Laboratory of Molecular and Nano Probes
- Ministry of Education
| | - Frank Weinhold
- Department of Chemistry
- University of Wisconsin
- Madison
- USA
| | - Dezhan Chen
- College of Chemistry
- Chemical Engineering and Materials Science
- Collaborative Innovation Center of Functionalized Probes for Chemical Imaging
- Key Laboratory of Molecular and Nano Probes
- Ministry of Education
| |
Collapse
|