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For: Xia SH, Cui G, Fang WH, Thiel W. How Photoisomerization Drives Peptide Folding and Unfolding: Insights from QM/MM and MM Dynamics Simulations. Angew Chem Int Ed Engl 2016;55:2067-72. [PMID: 26836339 DOI: 10.1002/anie.201509622] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Revised: 11/17/2015] [Indexed: 12/14/2022]
Number Cited by Other Article(s)
1
Wang Y, Li C, Zheng X. Markov State Models Reveal How Folding Kinetics Influence Absorption Spectra of Foldamers. J Chem Theory Comput 2024;20:5396-5407. [PMID: 38900275 DOI: 10.1021/acs.jctc.4c00202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]
2
Xu T, Li Y, Gao X, Zhang L. Understanding the Fast-Triggering Unfolding Dynamics of FK-11 upon Photoexcitation of Azobenzene. J Phys Chem Lett 2024;15:3531-3540. [PMID: 38526058 DOI: 10.1021/acs.jpclett.4c00091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2024]
3
Xie RF, Zhang JB, Wu Y, Li L, Liu XY, Cui G. Non-negligible roles of charge transfer excitons in ultrafast excitation energy transfer dynamics of a double-walled carbon nanotube. J Chem Phys 2023;158:054108. [PMID: 36754819 DOI: 10.1063/5.0134353] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
4
Xie BB, Jia PK, Wang KX, Chen WK, Liu XY, Cui G. Generalized Ab Initio Nonadiabatic Dynamics Simulation Methods from Molecular to Extended Systems. J Phys Chem A 2022;126:1789-1804. [PMID: 35266391 DOI: 10.1021/acs.jpca.1c10195] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
5
Liang R, Bakhtiiari A. Effects of Enzyme-Ligand Interactions on the Photoisomerization of a Light-Regulated Chemotherapeutic Drug. J Phys Chem B 2022;126:2382-2393. [PMID: 35297246 DOI: 10.1021/acs.jpcb.1c10819] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
6
Zhang J, Peng J, Hu D, Lan Z. Investigation of nonadiabatic dynamics in the photolysis of methyl nitrate (CH3ONO2) by on-the-fly surface hopping simulation. Phys Chem Chem Phys 2021;23:25597-25611. [PMID: 34546246 DOI: 10.1039/d1cp03226g] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
7
Titov E, Hummert J, Ikonnikov E, Mitrić R, Kornilov O. Electronic relaxation of aqueous aminoazobenzenes studied by time-resolved photoelectron spectroscopy and surface hopping TDDFT dynamics calculations. Faraday Discuss 2021;228:226-241. [PMID: 33586720 DOI: 10.1039/d0fd00111b] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
8
"On-The-Fly" Non-Adiabatic Dynamics Simulations on Photoinduced Ring-Closing Reaction of a Nucleoside-Based Diarylethene Photoswitch. Molecules 2021;26:molecules26092724. [PMID: 34066431 PMCID: PMC8125013 DOI: 10.3390/molecules26092724] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 04/29/2021] [Accepted: 05/03/2021] [Indexed: 11/17/2022]  Open
9
Stoica I, Epure EL, Constantin CP, Damaceanu MD, Ursu EL, Mihaila I, Sava I. Evaluation of Local Mechanical and Chemical Properties via AFM as a Tool for Understanding the Formation Mechanism of Pulsed UV Laser-Nanoinduced Patterns on Azo-Naphthalene-Based Polyimide Films. NANOMATERIALS 2021;11:nano11030812. [PMID: 33809999 PMCID: PMC8005186 DOI: 10.3390/nano11030812] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 03/15/2021] [Accepted: 03/19/2021] [Indexed: 12/13/2022]
10
Chen X, Yeoh YQ, He Y, Zhou C, Horsley JR, Abell AD, Yu J, Guo X. Unravelling Structural Dynamics within a Photoswitchable Single Peptide: A Step Towards Multimodal Bioinspired Nanodevices. Angew Chem Int Ed Engl 2020;59:22554-22562. [PMID: 32851761 DOI: 10.1002/anie.202004701] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 07/15/2020] [Indexed: 12/13/2022]
11
Chen X, Yeoh YQ, He Y, Zhou C, Horsley JR, Abell AD, Yu J, Guo X. Unravelling Structural Dynamics within a Photoswitchable Single Peptide: A Step Towards Multimodal Bioinspired Nanodevices. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202004701] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
12
Liu XY, Li ZW, Fang WH, Cui G. Nonadiabatic Exciton and Charge Separation Dynamics at Interfaces of Zinc Phthalocyanine and Fullerene: Orientation Does Matter. J Phys Chem A 2020;124:7388-7398. [DOI: 10.1021/acs.jpca.0c05865] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
13
Anumula R, Xiao P, Cui C, Wu H, Cui G, Fang WH, Luo Z, Yao J. A small bimetallic Ag3Cu2 nanocluster with dual emissions within and against Kasha's rule. NANOSCALE 2020;12:7864-7869. [PMID: 32227024 DOI: 10.1039/d0nr00471e] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
14
Zhang YH, Sun XW, Zhang TS, Liu XY, Cui G. Nonadiabatic Dynamics Simulations on Early-Time Photochemistry of Spirobenzopyran. J Phys Chem A 2020;124:2547-2559. [PMID: 32187492 DOI: 10.1021/acs.jpca.0c00791] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
15
Auvray F, Dennetiere D, Giuliani A, Jamme F, Wien F, Nay B, Zirah S, Polack F, Menneglier C, Lagarde B, Hirst JD, Réfrégiers M. Time resolved transient circular dichroism spectroscopy using synchrotron natural polarization. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2019;6:054307. [PMID: 31700943 PMCID: PMC6823104 DOI: 10.1063/1.5120346] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 10/09/2019] [Indexed: 06/10/2023]
16
Wang L, Qiu J, Bai X, Xu J. Surface hopping methods for nonadiabatic dynamics in extended systems. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1435] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
17
Xie B, Fang W. Combined Quantum Trajectory Mean‐Field and Molecular Mechanical (QTMF/MM) Nonadiabatic Dynamics Simulations on the Photoinduced Ring‐Opening Reaction of 2(5H)‐Thiophenone. CHEMPHOTOCHEM 2019. [DOI: 10.1002/cptc.201900076] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
18
Qiu J, Bai X, Wang L. Subspace Surface Hopping with Size-Independent Dynamics. J Phys Chem Lett 2019;10:637-644. [PMID: 30674193 DOI: 10.1021/acs.jpclett.8b03763] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
19
Li X, Hu D, Xie Y, Lan Z. Analysis of trajectory similarity and configuration similarity in on-the-fly surface-hopping simulation on multi-channel nonadiabatic photoisomerization dynamics. J Chem Phys 2018;149:244104. [DOI: 10.1063/1.5048049] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
20
Liu XY, Fang YG, Xie BB, Fang WH, Cui G. QM/MM nonadiabatic dynamics simulations on photoinduced Wolff rearrangements of 1,2,3-thiadiazole. J Chem Phys 2018;146:224302. [PMID: 29166059 DOI: 10.1063/1.4984589] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Mondal P, Granucci G, Rastädter D, Persico M, Burghardt I. Azobenzene as a photoregulator covalently attached to RNA: a quantum mechanics/molecular mechanics-surface hopping dynamics study. Chem Sci 2018;9:4671-4681. [PMID: 29899961 PMCID: PMC5969502 DOI: 10.1039/c8sc00072g] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2018] [Accepted: 04/25/2018] [Indexed: 12/21/2022]  Open
22
Wu D, Wang YT, Fang WH, Cui G, Thiel W. QM/MM Studies on Photoisomerization Dynamics of Azobenzene Chromophore Tethered to a DNA Duplex: Local Unpaired Nucleobase Plays a Crucial Role. Chem Asian J 2018;13:780-784. [PMID: 29446260 DOI: 10.1002/asia.201800006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Revised: 02/07/2018] [Indexed: 01/10/2023]
23
Wu Z, Cui P, Zhang G, Luo Y, Jiang J. Self-Adaptive Switch Enabling Complete Charge Separation in Molecular-Based Optoelectronic Conversion. J Phys Chem Lett 2018;9:837-843. [PMID: 29397736 DOI: 10.1021/acs.jpclett.8b00119] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
24
Mart RJ, Allemann RK. Azobenzene photocontrol of peptides and proteins. Chem Commun (Camb) 2018;52:12262-12277. [PMID: 27541361 DOI: 10.1039/c6cc04004g] [Citation(s) in RCA: 134] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
25
Strizhak AV, Sharma K, Babii O, Afonin S, Ulrich AS, Komarov IV, Spring DR. Highly reactive bis-cyclooctyne-modified diarylethene for SPAAC-mediated cross-linking. Org Biomol Chem 2018;16:8559-8564. [DOI: 10.1039/c8ob02428f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
26
Xie B, Cui G, Fang WH. Multiple-State Nonadiabatic Dynamics Simulation of Photoisomerization of Acetylacetone with the Direct ab Initio QTMF Approach. J Chem Theory Comput 2017;13:2717-2729. [DOI: 10.1021/acs.jctc.7b00153] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Gao YJ, Chang XP, Liu XY, Li QS, Cui G, Thiel W. Excited-State Decay Paths in Tetraphenylethene Derivatives. J Phys Chem A 2017;121:2572-2579. [PMID: 28318255 PMCID: PMC5385518 DOI: 10.1021/acs.jpca.7b00197] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
28
Gâz-Florea ȘA, Mircia E, Berţa L. Research Article. Precursor Synthesis of Some New Macrocyclic Compounds. ACTA MEDICA MARISIENSIS 2017. [DOI: 10.1515/amma-2017-0005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
29
Peng XL, Ding WL, Li QS, Li ZS. Theoretical insights into photo-induced Curtius rearrangement of chlorodifluoroacetyl azide. Org Chem Front 2017. [DOI: 10.1039/c7qo00083a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
30
Wang YT, Liu XY, Cui G, Fang WH, Thiel W. Photoisomerization of Arylazopyrazole Photoswitches: Stereospecific Excited-State Relaxation. Angew Chem Int Ed Engl 2016;55:14009-14013. [PMID: 27709760 PMCID: PMC5113807 DOI: 10.1002/anie.201607373] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Indexed: 12/22/2022]
31
Wang YT, Liu XY, Cui G, Fang WH, Thiel W. Photoisomerization of Arylazopyrazole Photoswitches: Stereospecific Excited-State Relaxation. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607373] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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