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Bombana A, Shanmugam M, Collison D, Kibler AJ, Newton GN, Jäger CM, Croft AK, Morra S, Mitchell NJ. Application of a Synthetic Ferredoxin-Inspired [4Fe4S]-Peptide Maquette as the Redox Partner for an [FeFe]-Hydrogenase. Chembiochem 2023; 24:e202300250. [PMID: 37391388 PMCID: PMC10946529 DOI: 10.1002/cbic.202300250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 06/24/2023] [Accepted: 06/28/2023] [Indexed: 07/02/2023]
Abstract
'Bacterial-type' ferredoxins host a cubane [4Fe4S]2+/+ cluster that enables these proteins to mediate electron transfer and facilitate a broad range of biological processes. Peptide maquettes based on the conserved cluster-forming motif have previously been reported and used to model the ferredoxins. Herein we explore the integration of a [4Fe4S]-peptide maquette into a H2 -powered electron transport chain. While routinely formed under anaerobic conditions, we illustrate by electron paramagnetic resonance (EPR) analysis that these maquettes can be reconstituted under aerobic conditions by using photoactivated NADH to reduce the cluster at 240 K. Attempts to tune the redox properties of the iron-sulfur cluster by introducing an Fe-coordinating selenocysteine residue were also explored. To demonstrate the integration of these artificial metalloproteins into a semi-synthetic electron transport chain, we utilize a ferredoxin-inspired [4Fe4S]-peptide maquette as the redox partner in the hydrogenase-mediated oxidation of H2 .
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Affiliation(s)
- Andrea Bombana
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Muralidharan Shanmugam
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - David Collison
- Department of Chemistry, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - Alexander J Kibler
- The GlaxoSmithKline Carbon Neutral Labs for Sustainable Chemistry, University of Nottingham Jubilee Campus, Triumph Road, Nottingham, NG7 2TU, UK
| | - Graham N Newton
- The GlaxoSmithKline Carbon Neutral Labs for Sustainable Chemistry, University of Nottingham Jubilee Campus, Triumph Road, Nottingham, NG7 2TU, UK
| | - Christof M Jäger
- Data Science and Modelling, Pharmaceutical Sciences, R&D, AstraZeneca Gothenburg, Pepparedsleden 1, 431 83, Mölndal, Sweden
- Department of Chemical and Environmental Engineering, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Anna K Croft
- Department of Chemical Engineering, School of AACME, Loughborough University, Loughborough, LE11 3TU, UK
| | - Simone Morra
- Department of Chemical and Environmental Engineering, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Nicholas J Mitchell
- School of Chemistry, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
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2
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Sidabras JW, Stripp ST. A personal account on 25 years of scientific literature on [FeFe]-hydrogenase. J Biol Inorg Chem 2023; 28:355-378. [PMID: 36856864 DOI: 10.1007/s00775-023-01992-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2022] [Accepted: 01/25/2023] [Indexed: 03/02/2023]
Abstract
[FeFe]-hydrogenases are gas-processing metalloenzymes that catalyze H2 oxidation and proton reduction (H2 release) in microorganisms. Their high turnover frequencies and lack of electrical overpotential in the hydrogen conversion reaction has inspired generations of biologists, chemists, and physicists to explore the inner workings of [FeFe]-hydrogenase. Here, we revisit 25 years of scientific literature on [FeFe]-hydrogenase and propose a personal account on 'must-read' research papers and review article that will allow interested scientists to follow the recent discussions on catalytic mechanism, O2 sensitivity, and the in vivo synthesis of the active site cofactor with its biologically uncommon ligands carbon monoxide and cyanide. Focused on-but not restricted to-structural biology and molecular biophysics, we highlight future directions that may inspire young investigators to pursue a career in the exciting and competitive field of [FeFe]-hydrogenase research.
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Affiliation(s)
- Jason W Sidabras
- Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI, USA, 53226.
| | - Sven T Stripp
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195, Berlin, Germany.
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3
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Wang N, Zhang XP, Han J, Lei H, Zhang Q, Zhang H, Zhang W, Apfel UP, Cao R. Promoting hydrogen evolution reaction with a sulfonic proton relay. CHINESE JOURNAL OF CATALYSIS 2023. [DOI: 10.1016/s1872-2067(22)64183-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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4
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Chaturvedi A, McCarver GA, Sinha S, Hix EG, Vogiatzis KD, Jiang J. A PEGylated Tin Porphyrin Complex for Electrocatalytic Proton Reduction: Mechanistic Insights into Main‐Group‐Element Catalysis. Angew Chem Int Ed Engl 2022; 61:e202206325. [DOI: 10.1002/anie.202206325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Indexed: 11/10/2022]
Affiliation(s)
- Ashwin Chaturvedi
- Department of Chemistry University of Cincinnati Cincinnati OH 45221 USA
| | - Gavin A. McCarver
- Department of Chemistry University of Tennessee Knoxville TN 37996-1600 USA
| | - Soumalya Sinha
- Department of Chemistry University of Cincinnati Cincinnati OH 45221 USA
| | - Elijah G. Hix
- Department of Chemistry University of Tennessee Knoxville TN 37996-1600 USA
| | | | - Jianbing Jiang
- Department of Chemistry University of Cincinnati Cincinnati OH 45221 USA
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5
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Stripp ST, Duffus BR, Fourmond V, Léger C, Leimkühler S, Hirota S, Hu Y, Jasniewski A, Ogata H, Ribbe MW. Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase. Chem Rev 2022; 122:11900-11973. [PMID: 35849738 PMCID: PMC9549741 DOI: 10.1021/acs.chemrev.1c00914] [Citation(s) in RCA: 50] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Gases like H2, N2, CO2, and CO are increasingly recognized as critical feedstock in "green" energy conversion and as sources of nitrogen and carbon for the agricultural and chemical sectors. However, the industrial transformation of N2, CO2, and CO and the production of H2 require significant energy input, which renders processes like steam reforming and the Haber-Bosch reaction economically and environmentally unviable. Nature, on the other hand, performs similar tasks efficiently at ambient temperature and pressure, exploiting gas-processing metalloenzymes (GPMs) that bind low-valent metal cofactors based on iron, nickel, molybdenum, tungsten, and sulfur. Such systems are studied to understand the biocatalytic principles of gas conversion including N2 fixation by nitrogenase and H2 production by hydrogenase as well as CO2 and CO conversion by formate dehydrogenase, carbon monoxide dehydrogenase, and nitrogenase. In this review, we emphasize the importance of the cofactor/protein interface, discussing how second and outer coordination sphere effects determine, modulate, and optimize the catalytic activity of GPMs. These may comprise ionic interactions in the second coordination sphere that shape the electron density distribution across the cofactor, hydrogen bonding changes, and allosteric effects. In the outer coordination sphere, proton transfer and electron transfer are discussed, alongside the role of hydrophobic substrate channels and protein structural changes. Combining the information gained from structural biology, enzyme kinetics, and various spectroscopic techniques, we aim toward a comprehensive understanding of catalysis beyond the first coordination sphere.
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Affiliation(s)
- Sven T Stripp
- Freie Universität Berlin, Experimental Molecular Biophysics, Berlin 14195, Germany
| | | | - Vincent Fourmond
- Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Microbiologie de la Méditerranée, Institut Microbiologie, Bioénergies et Biotechnologie, CNRS, Aix Marseille Université, Marseille 13402, France
| | - Christophe Léger
- Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Microbiologie de la Méditerranée, Institut Microbiologie, Bioénergies et Biotechnologie, CNRS, Aix Marseille Université, Marseille 13402, France
| | - Silke Leimkühler
- University of Potsdam, Molecular Enzymology, Potsdam 14476, Germany
| | - Shun Hirota
- Nara Institute of Science and Technology, Division of Materials Science, Graduate School of Science and Technology, Nara 630-0192, Japan
| | - Yilin Hu
- Department of Molecular Biology & Biochemistry, University of California, Irvine, California 92697-3900, United States
| | - Andrew Jasniewski
- Department of Molecular Biology & Biochemistry, University of California, Irvine, California 92697-3900, United States
| | - Hideaki Ogata
- Nara Institute of Science and Technology, Division of Materials Science, Graduate School of Science and Technology, Nara 630-0192, Japan.,Hokkaido University, Institute of Low Temperature Science, Sapporo 060-0819, Japan.,Graduate School of Science, University of Hyogo, Hyogo 678-1297, Japan
| | - Markus W Ribbe
- Department of Molecular Biology & Biochemistry, University of California, Irvine, California 92697-3900, United States.,Department of Chemistry, University of California, Irvine, California 92697-2025, United States
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6
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Chaturvedi A, McCarver GA, Sinha S, Hix EG, Vogiatzis KD, Jiang JJ. A PEGylated Tin‐Porphyrin Complex for Electrocatalytic Proton Reduction: Mechanistic Insights into Main‐Group Element Catalysis. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ashwin Chaturvedi
- University of Cincinnati Chemistry 312 College Dr. 45221 Cincinnati UNITED STATES
| | - Gavin A McCarver
- UT Knoxville: The University of Tennessee Knoxville Chemistry UNITED STATES
| | | | - Elijah G Hix
- UT Knoxville: The University of Tennessee Knoxville Chemistry UNITED STATES
| | - Konstantinos D Vogiatzis
- UT Knoxville: The University of Tennessee Knoxville Chemistry Buehler Hall1420 Circle Dr. 37996 Knoxville UNITED STATES
| | - Jianbing Jimmy Jiang
- University of Cincinnati Chemistry 312 College Dr. 45221 Cincinnati UNITED STATES
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7
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Zhou Z, Koide T, Shiota Y, Yano Y, Xu N, Ono T, Shimakoshi H, Yoshizawa K, isaeda Y. Synthesis, redox properties, and catalytic hydrogen gas generation of porphycene cobalt complexes. J PORPHYR PHTHALOCYA 2022. [DOI: 10.1142/s108842462250016x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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8
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Unusual structures and unknown roles of FeS clusters in metalloenzymes seen from a resonance Raman spectroscopic perspective. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2021.214287] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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9
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Abul-Futouh H, Abaalkhail SJ, Harb MK, Görls H, Weigand W. Structural studies and electrochemical catalysis investigation of [FeFe]-hydrogenase H-cluster mimics mediated by monophosphane ligands. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115382] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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10
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Affiliation(s)
- Sven T. Stripp
- Freie Universität Berlin, Department of Physics, Arnimallee 14, 14195 Berlin, Germany
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11
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Stripp ST, Mebs S, Haumann M. Temperature Dependence of Structural Dynamics at the Catalytic Cofactor of [FeFe]-hydrogenase. Inorg Chem 2020; 59:16474-16488. [PMID: 33147959 DOI: 10.1021/acs.inorgchem.0c02316] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
[FeFe]-hydrogenases are nature's blueprint for efficient hydrogen turnover. Understanding their enzymatic mechanism may improve technological H2 fuel generation. The active-site cofactor (H-cluster) consists of a [4Fe-4S] cluster ([4Fe]H), cysteine-linked to a diiron site ([2Fe]H) carrying an azadithiolate (adt) group, terminal cyanide and carbon monoxide ligands, and a bridging carbon monoxide (μCO) in the oxidized protein (Hox). Recently, the debate on the structure of reduced H-cluster states was intensified by the assignment of new species under cryogenic conditions. We investigated temperature effects (4-280 K) in infrared (IR) and X-ray absorption spectroscopy (XAS) data of [FeFe]-hydrogenases using fit analyses and quantum-chemical calculations. IR data from our laboratory and literature sources were evaluated. At ambient temperatures, reduced H-cluster states with a bridging hydride (μH-, in Hred and Hsred) or with an additional proton at [4Fe]H (Hred') or at the distal iron of [2Fe]H (Hhyd) prevail. At cryogenic temperatures, these species are largely replaced by states that hold a μCO, lack [4Fe]H protonation, and bind an additional proton at the adt nitrogen (HredH+ and HsredH+). XAS revealed the atomic coordinate dispersion (i.e., the Debye-Waller parameter, 2σ2) of the iron-ligand bonds and Fe-Fe distances in the oxidized and reduced H-cluster. 2σ2 showed a temperature dependence typical for the so-called protein-glass transition, with small changes below ∼200 K and a pronounced increase above this "breakpoint". This behavior is attributed to the freezing-out of larger-scale anharmonic motions of amino acid side chains and water species. We propose that protonation at [4Fe]H as well as ligand rearrangement and μH- binding at [2Fe]H are impaired because of restricted molecular mobility at cryogenic temperatures so that protonation can be biased toward adt. We conclude that a H-cluster with a μCO, selective [4Fe]H or [2Fe]H protonation, and catalytic proton transfer via adt facilitates efficient H2 conversion in [FeFe]-hydrogenase.
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Affiliation(s)
- Sven T Stripp
- Physics Department, Freie Universität Berlin, Arnimallee 14, Berlin 14195, Germany
| | - Stefan Mebs
- Physics Department, Freie Universität Berlin, Arnimallee 14, Berlin 14195, Germany
| | - Michael Haumann
- Physics Department, Freie Universität Berlin, Arnimallee 14, Berlin 14195, Germany
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12
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Lei H, Wang Y, Zhang Q, Cao R. First-row transition metal porphyrins for electrocatalytic hydrogen evolution — a SPP/JPP Young Investigator Award paper. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424620500157] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
A series of first-row transition metal complexes of tetrakis(pentafluorophenyl)porphyrin (1), denoted as 1-M (M [Formula: see text] Mn, Fe, Co, Ni, Cu, and Zn), were synthesized and examined as electrocatalysts for the hydrogen evolution reaction (HER). All these transition metal porphyrins were shown to be active for HER in acetonitrile using trifluoroacetic acid (TFA) as the proton source. The molecular nature and the stability of these metal porphyrins when functioning as HER catalysts were confirmed, and all catalysts gave Faradaic efficiency of >97% for H2 generation during bulk electrolysis. Importantly, by using 1-Cu, a remarkably high turnover frequency (TOF) of 48500 s[Formula: see text] 1-Cu the most efficient among this series of metal porphyrin catalysts. This TOF value also represents one of the highest values reported in the literature. In addition, electrochemical analysis demonstrated that catalytic HER mechanisms with these 1-M complexes are different. These results show that with the same porphyrin ligand, the change of metal ions will have significant impact on both catalytic efficiency and mechanism. This work for the first time provides direct comparison of electrocatalytic HER features of transition metal complexes of tetrakis(pentafluorophenyl)porphyrin under identical conditions, and will be valuable for future design and development of more efficient HER electrocatalysts of this series.
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Affiliation(s)
- Haitao Lei
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, China
| | - Yabo Wang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, China
| | - Qingxin Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, China
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an 710119, China
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13
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Corrigan PS, Tirsch JL, Silakov A. Investigation of the Unusual Ability of the [FeFe] Hydrogenase from Clostridium beijerinckii to Access an O 2-Protected State. J Am Chem Soc 2020; 142:12409-12419. [PMID: 32580545 DOI: 10.1021/jacs.0c04964] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
[FeFe] hydrogenases are enzymes capable of producing and oxidizing H2 at staggering submillisecond time scales. A major limitation in applying these enzymes for industrial hydrogen production is their irreversible inactivation by oxygen. Recently, an [FeFe] hydrogenase from Clostridium beijerinckii (CbHydA1) was reported to regain its catalytic activity after exposure to oxygen. In this report, we have determined that artificially matured CbHydA1 is indeed oxygen tolerant in the absence of reducing agents and sulfides by means of reaching an O2-protected state (Hinact). We were also able to generate the Hinact state anaerobically via both chemical and electrochemical oxidation. We use a combination of spectroscopy, electrochemistry, and density functional theory (DFT) to uncover intrinsic properties of the active center of CbHydA1, leading to its unprecedented oxygen tolerance. We have observed that reversible, low-potential oxidation of the active center leads to the protection against O2-induced degradation. The transition between the active oxidized state (Hox) and the Hinact state appears to proceed without any detectable intermediates. We found that the Hinact state is stable for more than 40 h in air, highlighting the remarkable resilience of CbHydA1 to oxygen. Using a combination of DFT and FTIR, we also provide a hypothesis for the chemical identity of the Hinact state. These results demonstrate that CbHydA1 has remarkable stability in the presence of oxygen, which will drive future efforts to engineer more robust catalysts for biofuel production.
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Affiliation(s)
- Patrick S Corrigan
- The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, United States
| | - Jonathan L Tirsch
- The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, United States
| | - Alexey Silakov
- The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, United States
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14
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Xie L, Tian J, Ouyang Y, Guo X, Zhang W, Apfel U, Zhang W, Cao R. Water‐Soluble Polymers with Appending Porphyrins as Bioinspired Catalysts for the Hydrogen Evolution Reaction. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202003836] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Lisi Xie
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Jia Tian
- Shanghai Key Laboratory of Functional Materials Chemistry School of Chemistry and Molecular Engineering East China University of Science and Technology Shanghai 200237 China
| | - Yingjie Ouyang
- Shanghai Key Laboratory of Functional Materials Chemistry School of Chemistry and Molecular Engineering East China University of Science and Technology Shanghai 200237 China
| | - Xinai Guo
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Weian Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry School of Chemistry and Molecular Engineering East China University of Science and Technology Shanghai 200237 China
| | - Ulf‐Peter Apfel
- Ruhr-Universität Bochum Fakultät für Chemie und Biochemie Anorganische Chemie I Universitätsstrasse 150 44801 Bochum Germany
- Fraunhofer UMSICHT Osterfelder Strasse 3 46047 Oberhausen Germany
| | - Wei Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
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15
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Xie L, Tian J, Ouyang Y, Guo X, Zhang W, Apfel U, Zhang W, Cao R. Water‐Soluble Polymers with Appending Porphyrins as Bioinspired Catalysts for the Hydrogen Evolution Reaction. Angew Chem Int Ed Engl 2020; 59:15844-15848. [DOI: 10.1002/anie.202003836] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 05/10/2020] [Indexed: 01/09/2023]
Affiliation(s)
- Lisi Xie
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Jia Tian
- Shanghai Key Laboratory of Functional Materials Chemistry School of Chemistry and Molecular Engineering East China University of Science and Technology Shanghai 200237 China
| | - Yingjie Ouyang
- Shanghai Key Laboratory of Functional Materials Chemistry School of Chemistry and Molecular Engineering East China University of Science and Technology Shanghai 200237 China
| | - Xinai Guo
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Weian Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry School of Chemistry and Molecular Engineering East China University of Science and Technology Shanghai 200237 China
| | - Ulf‐Peter Apfel
- Ruhr-Universität Bochum Fakultät für Chemie und Biochemie Anorganische Chemie I Universitätsstrasse 150 44801 Bochum Germany
- Fraunhofer UMSICHT Osterfelder Strasse 3 46047 Oberhausen Germany
| | - Wei Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry Ministry of Education School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710119 China
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16
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Land H, Senger M, Berggren G, Stripp ST. Current State of [FeFe]-Hydrogenase Research: Biodiversity and Spectroscopic Investigations. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01614] [Citation(s) in RCA: 60] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Henrik Land
- Molecular Biomimetics, Department of Chemistry, Ångström Laboratory, Uppsala University, Uppsala 75120, Sweden
| | - Moritz Senger
- Physical Chemistry, Department of Chemistry, Ångström Laboratory, Uppsala University, Uppsala 75120, Sweden
- Bioinorganic Spectroscopy, Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Gustav Berggren
- Molecular Biomimetics, Department of Chemistry, Ångström Laboratory, Uppsala University, Uppsala 75120, Sweden
| | - Sven T. Stripp
- Bioinorganic Spectroscopy, Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
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17
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Wittkamp F, Mishra N, Wang H, Wille HC, Steinbrügge R, Kaupp M, Cramer SP, Apfel UP, Pelmenschikov V. Insights from 125Te and 57Fe nuclear resonance vibrational spectroscopy: a [4Fe-4Te] cluster from two points of view. Chem Sci 2019; 10:7535-7541. [PMID: 31588304 PMCID: PMC6761874 DOI: 10.1039/c9sc02025j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Accepted: 06/22/2019] [Indexed: 11/21/2022] Open
Abstract
Can sulfur-to-tellurium exchange serve as a method to understand iron–sulfur clusters of enzymatic systems?
Iron–sulfur clusters are common building blocks for electron transport and active sites of metalloproteins. Their comprehensive investigation is crucial for understanding these enzymes, which play important roles in modern biomimetic catalysis and biotechnology applications. We address this issue by utilizing (Et4N)3[Fe4Te4(SPh)4], a tellurium modified version of a conventional reduced [4Fe–4S]+ cluster, and performed both 57Fe- and 125Te-NRVS to reveal its characteristic vibrational features. Our analysis exposed major differences in the resulting 57Fe spectrum profile as compared to that of the respective [4Fe–4S] cluster, and between the 57Fe and 125Te profiles. DFT calculations are applied to rationalize structural, electronic, vibrational, and redox-dependent properties of the [4Fe–4Te]+ core. We herein highlight the potential of sulfur/tellurium exchange as a method to isolate the iron-only motion in enzymatic systems.
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Affiliation(s)
- Florian Wittkamp
- Department of Chemistry and Biochemistry , Inorganic Chemistry I , Ruhr-Universität Bochum , Universitätsstraße 150 , 44801 Bochum , Germany .
| | - Nakul Mishra
- Department of Chemistry , University of California , Davis, One Shields Avenue , Davis , California 95616 , USA .
| | - Hongxin Wang
- Department of Chemistry , University of California , Davis, One Shields Avenue , Davis , California 95616 , USA .
| | - Hans-Christian Wille
- Deutsches Elektronen-Synchrotron DESY , Notkestraße 85 , 22607 Hamburg , Germany
| | - René Steinbrügge
- Deutsches Elektronen-Synchrotron DESY , Notkestraße 85 , 22607 Hamburg , Germany
| | - Martin Kaupp
- Institute of Chemistry , Theoretical Chemistry/Quantum Chemistry , Technical University of Berlin , Sekr. C7, Straße des 17. Juni 135 , 10623 Berlin , Germany .
| | - Stephen P Cramer
- Department of Chemistry , University of California , Davis, One Shields Avenue , Davis , California 95616 , USA .
| | - Ulf-Peter Apfel
- Department of Chemistry and Biochemistry , Inorganic Chemistry I , Ruhr-Universität Bochum , Universitätsstraße 150 , 44801 Bochum , Germany . .,Fraunhofer UMSICHT , Osterfelder Straße 3 , 46047 Oberhausen , Germany
| | - Vladimir Pelmenschikov
- Institute of Chemistry , Theoretical Chemistry/Quantum Chemistry , Technical University of Berlin , Sekr. C7, Straße des 17. Juni 135 , 10623 Berlin , Germany .
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18
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Németh B, Esmieu C, Redman HJ, Berggren G. Monitoring H-cluster assembly using a semi-synthetic HydF protein. Dalton Trans 2019; 48:5978-5986. [PMID: 30632592 PMCID: PMC6509880 DOI: 10.1039/c8dt04294b] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2018] [Accepted: 12/21/2018] [Indexed: 11/21/2022]
Abstract
The [FeFe] hydrogenase enzyme interconverts protons and molecular hydrogen with remarkable efficiency. The reaction is catalysed by a unique metallo-cofactor denoted as the H-cluster containing an organometallic dinuclear Fe component, the [2Fe] subsite. The HydF protein delivers a precursor of the [2Fe] subsite to the apo-[FeFe] hydrogenase, thus completing the H-cluster and activating the enzyme. Herein we generate a semi-synthetic form of HydF by loading it with a synthetic low valent dinuclear Fe complex. We show that this semi-synthetic protein is practically indistinguishable from the native protein, and utilize this form of HydF to explore the mechanism of H-cluster assembly. More specifically, we show that transfer of the precatalyst from HydF to the hydrogenase enzyme results in the release of CO, underscoring that the pre-catalyst is a four CO species when bound to HydF. Moreover, we propose that an electron transfer reaction occurs during H-cluster assembly, resulting in an oxidation of the [2Fe] subsite with concomitant reduction of the [4Fe4S] cluster present on the HydF protein.
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Affiliation(s)
- Brigitta Németh
- Molecular Biomimetics
, Department of Chemistry – Ångström Laboratory
, Uppsala University
,
75120 Uppsala
, Sweden
.
| | - Charlène Esmieu
- Molecular Biomimetics
, Department of Chemistry – Ångström Laboratory
, Uppsala University
,
75120 Uppsala
, Sweden
.
| | - Holly J. Redman
- Molecular Biomimetics
, Department of Chemistry – Ångström Laboratory
, Uppsala University
,
75120 Uppsala
, Sweden
.
| | - Gustav Berggren
- Molecular Biomimetics
, Department of Chemistry – Ångström Laboratory
, Uppsala University
,
75120 Uppsala
, Sweden
.
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19
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Mebs S, Duan J, Wittkamp F, Stripp ST, Happe T, Apfel UP, Winkler M, Haumann M. Differential Protonation at the Catalytic Six-Iron Cofactor of [FeFe]-Hydrogenases Revealed by 57Fe Nuclear Resonance X-ray Scattering and Quantum Mechanics/Molecular Mechanics Analyses. Inorg Chem 2019; 58:4000-4013. [PMID: 30802044 DOI: 10.1021/acs.inorgchem.9b00100] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
[FeFe]-hydrogenases are efficient biological hydrogen conversion catalysts and blueprints for technological fuel production. The relations between substrate interactions and electron/proton transfer events at their unique six-iron cofactor (H-cluster) need to be elucidated. The H-cluster comprises a four-iron cluster, [4Fe4S], linked to a diiron complex, [FeFe]. We combined 57Fe-specific X-ray nuclear resonance scattering experiments (NFS, nuclear forward scattering; NRVS, nuclear resonance vibrational spectroscopy) with quantum-mechanics/molecular-mechanics computations to study the [FeFe]-hydrogenase HYDA1 from a green alga. Selective 57Fe labeling at only [4Fe4S] or [FeFe], or at both subcomplexes was achieved by protein expression with a 57Fe salt and in vitro maturation with a synthetic diiron site precursor containing 57Fe. H-cluster states were populated under infrared spectroscopy control. NRVS spectral analyses facilitated assignment of the vibrational modes of the cofactor species. This approach revealed the H-cluster structure of the oxidized state (Hox) with a bridging carbon monoxide at [FeFe] and ligand rearrangement in the CO-inhibited state (Hox-CO). Protonation at a cysteine ligand of [4Fe4S] in the oxidized state occurring at low pH (HoxH) was indicated, in contrast to bridging hydride binding at [FeFe] in a one-electron reduced state (Hred). These findings are direct evidence for differential protonation either at the four-iron or diiron subcomplex of the H-cluster. NFS time-traces provided Mössbauer parameters such as the quadrupole splitting energy, which differ among cofactor states, thereby supporting selective protonation at either subcomplex. In combination with data for reduced states showing similar [4Fe4S] protonation as HoxH without (Hred') or with (Hhyd) a terminal hydride at [FeFe], our results imply that coordination geometry dynamics at the diiron site and proton-coupled electron transfer to either the four-iron or the diiron subcomplex discriminate catalytic and regulatory functions of [FeFe]-hydrogenases. We support a reaction cycle avoiding diiron site geometry changes during rapid H2 turnover.
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Affiliation(s)
| | | | | | | | | | - Ulf-Peter Apfel
- Fraunhofer UMSICHT , Osterfelder Straße 3 , 46047 Oberhausen , Germany
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20
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Li H, Li X, Lei H, Zhou G, Zhang W, Cao R. Convenient Immobilization of Cobalt Corroles on Carbon Nanotubes through Covalent Bonds for Electrocatalytic Hydrogen and Oxygen Evolution Reactions. CHEMSUSCHEM 2019; 12:801-806. [PMID: 30575300 DOI: 10.1002/cssc.201802765] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Revised: 12/19/2018] [Indexed: 06/09/2023]
Abstract
Two different methods were used to immobilize Co corroles on carbon nanotubes (CNTs) through covalent bonds. The resulting CNTs engineered with Co corroles were used as electrocatalysts for the hydrogen evolution reaction (HER) and the oxygen evolution reaction (OER) in aqueous solutions of pH 0, 7, and 14. For both HER and OER in all solutions, the hybrids obtained by attaching Co corroles on CNTs through amidation coupling showed better performance. This is likely because the large surface area and good electrical conductivity of CNTs can be well preserved during the amidation reaction under mild conditions.
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Affiliation(s)
- Hua Li
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, P.R. China
| | - Xialiang Li
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, P.R. China
| | - Haitao Lei
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, P.R. China
| | - Guojun Zhou
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, P.R. China
| | - Wei Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, P.R. China
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, P.R. China
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21
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Trautwein R, Abul-Futouh H, Görls H, Imhof W, Almazahreh LR, Weigand W. Sulphur–sulphur, sulphur–selenium, selenium–selenium and selenium–carbon bond activation using Fe3(CO)12: an unexpected formation of an Fe2(CO)6 complex containing a μ2,κ3-C,O,Se-ligand. NEW J CHEM 2019. [DOI: 10.1039/c9nj02642h] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Four diiron hexacarbonyl-complexes containing dithiolato (5), diselenolato (6), selenolato-thiolato (7) and μ2,κ3-C,O,Se-ligands (8), respectively have been prepared as [FeFe]-hydrogenase mimics.
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Affiliation(s)
- Ralf Trautwein
- Institut für Anorganische und Analytische Chemie
- Friedrich-Schiller-Universität Jena
- 07743 Jena
- Germany
| | - Hassan Abul-Futouh
- Department of Pharmacy
- Al-Zaytoonah University of Jordan
- Amman 11733
- Jordan
| | - Helmar Görls
- Institut für Anorganische und Analytische Chemie
- Friedrich-Schiller-Universität Jena
- 07743 Jena
- Germany
| | - Wolfgang Imhof
- Institut für Integrierte Naturwissenschaften
- Universität Koblenz-Landau
- D-56070 Koblenz
- Germany
| | | | - Wolfgang Weigand
- Institut für Anorganische und Analytische Chemie
- Friedrich-Schiller-Universität Jena
- 07743 Jena
- Germany
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22
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Wang N, Lei H, Zhang Z, Li J, Zhang W, Cao R. Electrocatalytic hydrogen evolution with gallium hydride and ligand-centered reduction. Chem Sci 2018; 10:2308-2314. [PMID: 30881656 PMCID: PMC6385664 DOI: 10.1039/c8sc05247f] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Accepted: 12/26/2018] [Indexed: 12/05/2022] Open
Abstract
GaIII porphyrin is active for electrocatalytic hydrogen evolution with unusual features, including ligand-centered electron transfer and formation of post-transition metal hydride.
GaIII chloride tetrakis(pentafluorophenyl)porphyrin (1) was synthesized and shown to be a highly active and stable post-transition metal-based electrocatalyst for the hydrogen evolution reaction (HER). Electrochemical and spectroscopic studies indicate that both the first and second reduction events of 1 are ligand-centered. The 2e-reduced form 12– reacts with a proton to give GaIII–H species (1–H), which undergoes protonolysis with Brønsted acids to produce H2. The identification of key intermediates 1–, 12–, and 1–H leads to a catalytic cycle, which is valuable for the fundamental understanding of the HER. This study presents a rare but highly active HER electrocatalyst with unusual features, including ligand-centered electron transfer and formation of post-transition metal hydride.
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Affiliation(s)
- Ni Wang
- Key Laboratory of Applied Surface and Colloid Chemistry , Ministry of Education , School of Chemistry and Chemical Engineering , Shaanxi Normal University , Xi'an 710119 , China .
| | - Haitao Lei
- Key Laboratory of Applied Surface and Colloid Chemistry , Ministry of Education , School of Chemistry and Chemical Engineering , Shaanxi Normal University , Xi'an 710119 , China .
| | - Zongyao Zhang
- Department of Chemistry , Renmin University of China , Beijing 100872 , China
| | - Jianfeng Li
- College of Materials Science and Optoelectronic Technology , University of Chinese Academy of Science , Beijing 101408 , China
| | - Wei Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry , Ministry of Education , School of Chemistry and Chemical Engineering , Shaanxi Normal University , Xi'an 710119 , China .
| | - Rui Cao
- Key Laboratory of Applied Surface and Colloid Chemistry , Ministry of Education , School of Chemistry and Chemical Engineering , Shaanxi Normal University , Xi'an 710119 , China . .,Department of Chemistry , Renmin University of China , Beijing 100872 , China
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23
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Duan J, Senger M, Esselborn J, Engelbrecht V, Wittkamp F, Apfel UP, Hofmann E, Stripp ST, Happe T, Winkler M. Crystallographic and spectroscopic assignment of the proton transfer pathway in [FeFe]-hydrogenases. Nat Commun 2018; 9:4726. [PMID: 30413719 PMCID: PMC6226526 DOI: 10.1038/s41467-018-07140-x] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Accepted: 10/18/2018] [Indexed: 11/29/2022] Open
Abstract
The unmatched catalytic turnover rates of [FeFe]-hydrogenases require an exceptionally efficient proton-transfer (PT) pathway to shuttle protons as substrates or products between bulk water and catalytic center. For clostridial [FeFe]-hydrogenase CpI such a pathway has been proposed and analyzed, but mainly on a theoretical basis. Here, eleven enzyme variants of two different [FeFe]-hydrogenases (CpI and HydA1) with substitutions in the presumptive PT-pathway are examined kinetically, spectroscopically, and crystallographically to provide solid experimental proof for its role in hydrogen-turnover. Targeting key residues of the PT-pathway by site directed mutagenesis significantly alters the pH-activity profile of these variants and in presence of H2 their cofactor is trapped in an intermediate state indicative of precluded proton-transfer. Furthermore, crystal structures coherently explain the individual levels of residual activity, demonstrating e.g. how trapped H2O molecules rescue the interrupted PT-pathway. These features provide conclusive evidence that the targeted positions are indeed vital for catalytic proton-transfer. [FeFe]-hydrogenases catalyze H2-evolution and -oxidation at very high turnover-rates. Here the authors provide experimental evidence for the proposed proton-transfer (PT) pathway by kinetically, spectroscopically, and crystallographically characterizing eleven mutants from the two [FeFe]-hydrogenases CpI and HydA1.
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Affiliation(s)
- Jifu Duan
- Department of Plant Biochemistry, Photobiotechnology, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Moritz Senger
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, 14195, Berlin, Germany
| | - Julian Esselborn
- Department of Plant Biochemistry, Photobiotechnology, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Vera Engelbrecht
- Department of Plant Biochemistry, Photobiotechnology, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Florian Wittkamp
- Department of Chemistry and Biochemistry, Inorganic Chemistry Ι, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Ulf-Peter Apfel
- Department of Chemistry and Biochemistry, Inorganic Chemistry Ι, Ruhr-Universität Bochum, 44801, Bochum, Germany.,Fraunhofer UMSICHT, Osterfelder Straße, 346047, Oberhausen, Germany
| | - Eckhard Hofmann
- Department of Biophysics, Protein Crystallography, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Sven T Stripp
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, 14195, Berlin, Germany
| | - Thomas Happe
- Department of Plant Biochemistry, Photobiotechnology, Ruhr-Universität Bochum, 44801, Bochum, Germany.
| | - Martin Winkler
- Department of Plant Biochemistry, Photobiotechnology, Ruhr-Universität Bochum, 44801, Bochum, Germany.
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24
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Abstract
Over the past two decades, the bioinorganic chemistry of hydrogenases has attracted much interest from basic and applied research. Hydrogenases are highly efficient metalloenzymes that catalyze the reversible reduction of protons to molecular hydrogen (H2) in all domains of life. Their iron- and nickel-based cofactors represent promising blueprints for the design of biomimetic, synthetic catalysts. In this Account, we address the molecular proceedings of hydrogen turnover with [FeFe]-hydrogenases. The active site cofactor of [FeFe]-hydrogenases ("H-cluster") comprises a unique diiron complex linked to a [4Fe-4S] cluster via a single cysteine. Since it was discovered that a synthetic analogue of the diiron site can be incorporated into apoprotein in vitro to yield active enzyme, significant progress has been made toward a comprehensive understanding of hydrogenase catalysis. The diiron site carries three to four carbon monoxide (CO) and two cyanide (CN-) ligands that give rise to intense infrared (IR) absorption bands. These bands are sensitive reporters of the electron density across the H-cluster, which can be addressed by infrared spectroscopy to follow redox and protonation changes at the cofactor. Synthetic variation of the metal-bridging dithiolate ligand at the diiron site, as well as site-directed mutagenesis of amino acids, provides access to the proton pathways toward the cofactor. Quantum chemical calculations are employed to specifically assign IR bands to vibrational modes of the diatomic ligands and yield refined H-cluster geometries. Here, we provide an overview of recent research on [FeFe]-hydrogenases with emphasis on experimental and computational IR studies. We describe advances in attenuated total reflection Fourier transform infrared spectroscopy (ATR FTIR) and protein film electrochemistry, as well as density functional theory (DFT) calculations. Key cofactor species are discussed in terms of molecular geometry, redox state, and protonation. Isotope editing is introduced as a tool to evaluate the cofactor geometry beyond the limits of protein crystallography. In particular, the role of proton-coupled electron transfer (PCET) in the generation of catalytically relevant redox species is addressed. We propose that site-selective protonation of the H-cluster biases surplus electrons either to the [4Fe-4S] cluster or to the diiron site. Protonation of the [4Fe-4S] cluster prevents premature reduction at the diiron site and stabilizes a reactive, terminal hydride. The observed H-cluster species are assigned to rapid H2 conversion or to reactions possibly involved in activity regulation and cellular H2 sensing. In the catalytic cycle of [FeFe]-hydrogenases, an H-cluster geometry is preserved that features a bridging CO ligand. PCET levels the redox potential for two steps of sequential cofactor reduction. The concept of consecutive PCET at a geometrically inert cofactor with tight control of electron and proton localization may inspire the design of a novel generation of biomimetic catalysts for the production of H2 as a fuel.
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Affiliation(s)
- Michael Haumann
- Department of Physics, Biophysics of Metalloenzymes, Freie Universität Berlin, 14195 Berlin, Germany
| | - Sven T. Stripp
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, 14195 Berlin, Germany
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25
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Hemschemeier A, Happe T. The plasticity of redox cofactors: from metalloenzymes to redox-active DNA. Nat Rev Chem 2018. [DOI: 10.1038/s41570-018-0029-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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26
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Kertess L, Wittkamp F, Sommer C, Esselborn J, Rüdiger O, Reijerse EJ, Hofmann E, Lubitz W, Winkler M, Happe T, Apfel UP. Chalcogenide substitution in the [2Fe] cluster of [FeFe]-hydrogenases conserves high enzymatic activity. Dalton Trans 2018; 46:16947-16958. [PMID: 29177350 DOI: 10.1039/c7dt03785f] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
[FeFe]-Hydrogenases efficiently catalyze the uptake and evolution of H2 due to the presence of an inorganic [6Fe-6S]-cofactor (H-cluster). This cofactor is comprised of a [4Fe-4S] cluster coupled to a unique [2Fe] cluster where the catalytic turnover of H2/H+ takes place. We herein report on the synthesis of a selenium substituted [2Fe] cluster [Fe2{μ(SeCH2)2NH}(CO)4(CN)2]2- (ADSe) and its successful in vitro integration into the native protein scaffold of [FeFe]-hydrogenases HydA1 from Chlamydomonas reinhardtii and CpI from Clostridium pasteurianum yielding fully active enzymes (HydA1-ADSe and CpI-ADSe). FT-IR spectroscopy and X-ray structure analysis confirmed the presence of structurally intact ADSe at the active site. Electrochemical assays reveal that the selenium containing enzymes are more biased towards hydrogen production than their native counterparts. In contrast to previous chalcogenide exchange studies, the S to Se exchange herein is not based on a simple reconstitution approach using ionic cluster constituents but on the in vitro maturation with a pre-synthesized selenium-containing [2Fe] mimic. The combination of biological and chemical methods allowed for the creation of a novel [FeFe]-hydrogenase with a [2Fe2Se]-active site which confers individual catalytic features.
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Affiliation(s)
- L Kertess
- Ruhr-Universität Bochum, Lehrstuhl für Biochemie der Pflanzen, AG Photobiotechnologie, Universitätsstraße 150, 44801 Bochum, Germany.
| | - F Wittkamp
- Ruhr-Universität Bochum, Anorganische Chemie I/Bioanorganische Chemie, Universitätsstraße 150, 44801 Bochum, Germany.
| | - C Sommer
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - J Esselborn
- Ruhr-Universität Bochum, Lehrstuhl für Biochemie der Pflanzen, AG Photobiotechnologie, Universitätsstraße 150, 44801 Bochum, Germany.
| | - O Rüdiger
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - E J Reijerse
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - E Hofmann
- Ruhr-Universität Bochum, Lehrstuhl für Biophysik, AG Röntgenstrukturanalyse an Proteinen, Universitätsstraße 150, 44801 Bochum, Germany
| | - W Lubitz
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstraße 34-36, 45470 Mülheim an der Ruhr, Germany
| | - M Winkler
- Ruhr-Universität Bochum, Lehrstuhl für Biochemie der Pflanzen, AG Photobiotechnologie, Universitätsstraße 150, 44801 Bochum, Germany.
| | - T Happe
- Ruhr-Universität Bochum, Lehrstuhl für Biochemie der Pflanzen, AG Photobiotechnologie, Universitätsstraße 150, 44801 Bochum, Germany.
| | - U-P Apfel
- Ruhr-Universität Bochum, Anorganische Chemie I/Bioanorganische Chemie, Universitätsstraße 150, 44801 Bochum, Germany.
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27
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Spectroscopic investigations of a semi-synthetic [FeFe] hydrogenase with propane di-selenol as bridging ligand in the binuclear subsite: comparison to the wild type and propane di-thiol variants. J Biol Inorg Chem 2018; 23:481-491. [PMID: 29627860 PMCID: PMC5940705 DOI: 10.1007/s00775-018-1558-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Accepted: 03/30/2018] [Indexed: 11/25/2022]
Abstract
[FeFe] Hydrogenases catalyze the reversible conversion of H2 into electrons and protons. Their catalytic site, the H-cluster, contains a generic [4Fe–4S]H cluster coupled to a [2Fe]H subsite [Fe2(ADT)(CO)3(CN)2]2−, ADT = µ(SCH2)2NH. Heterologously expressed [FeFe] hydrogenases (apo-hydrogenase) lack the [2Fe]H unit, but this can be incorporated through artificial maturation with a synthetic precursor [Fe2(ADT)(CO)4(CN)2]2−. Maturation with a [2Fe] complex in which the essential ADT amine moiety has been replaced by CH2 (PDT = propane-dithiolate) results in a low activity enzyme with structural and spectroscopic properties similar to those of the native enzyme, but with simplified redox behavior. Here, we study the effect of sulfur-to-selenium (S-to-Se) substitution in the bridging PDT ligand incorporated in the [FeFe] hydrogenase HydA1 from Chlamydomonas reinhardtii using magnetic resonance (EPR, NMR), FTIR and spectroelectrochemistry. The resulting HydA1-PDSe enzyme shows the same redox behavior as the parent HydA1-PDT. In addition, a state is observed in which extraneous CO is bound to the open coordination site of the [2Fe]H unit. This state was previously observed only in the native enzyme HydA1-ADT and not in HydA1-PDT. The spectroscopic features and redox behavior of HydA1-PDSe, resulting from maturation with [Fe2(PDSe)(CO)4(CN)2]2−, are discussed in terms of spin and charge density shifts and provide interesting insight into the electronic structure of the H-cluster. We also studied the effect of S-to-Se substitution in the [4Fe–4S] subcluster. The reduced form of HydA1 containing only the [4Fe–4Se]H cluster shows a characteristic S = 7/2 spin state which converts back into the S = 1/2 spin state upon maturation with a [2Fe]–PDT/ADT complex.
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28
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Esmieu C, Raleiras P, Berggren G. From protein engineering to artificial enzymes - biological and biomimetic approaches towards sustainable hydrogen production. SUSTAINABLE ENERGY & FUELS 2018; 2:724-750. [PMID: 31497651 PMCID: PMC6695573 DOI: 10.1039/c7se00582b] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Accepted: 01/31/2018] [Indexed: 06/09/2023]
Abstract
Hydrogen gas is used extensively in industry today and is often put forward as a suitable energy carrier due its high energy density. Currently, the main source of molecular hydrogen is fossil fuels via steam reforming. Consequently, novel production methods are required to improve the sustainability of hydrogen gas for industrial processes, as well as paving the way for its implementation as a future solar fuel. Nature has already developed an elaborate hydrogen economy, where the production and consumption of hydrogen gas is catalysed by hydrogenase enzymes. In this review we summarize efforts on engineering and optimizing these enzymes for biological hydrogen gas production, with an emphasis on their inorganic cofactors. Moreover, we will describe how our understanding of these enzymes has been applied for the preparation of bio-inspired/-mimetic systems for efficient and sustainable hydrogen production.
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Affiliation(s)
- C Esmieu
- Department of Chemistry , Ångström Laboratory , Uppsala University , Box 523 , SE-75120 Uppsala , Sweden .
| | - P Raleiras
- Department of Chemistry , Ångström Laboratory , Uppsala University , Box 523 , SE-75120 Uppsala , Sweden .
| | - G Berggren
- Department of Chemistry , Ångström Laboratory , Uppsala University , Box 523 , SE-75120 Uppsala , Sweden .
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29
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Sommer C, Richers CP, Lubitz W, Rauchfuss TB, Reijerse EJ. A [RuRu] Analogue of an [FeFe]-Hydrogenase Traps the Key Hydride Intermediate of the Catalytic Cycle. Angew Chem Int Ed Engl 2018; 57:5429-5432. [PMID: 29577535 DOI: 10.1002/anie.201801914] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Indexed: 12/15/2022]
Abstract
The active site of the [FeFe]-hydrogenases features a binuclear [2Fe]H sub-cluster that contains a unique bridging amine moiety close to an exposed iron center. Heterolytic splitting of H2 results in the formation of a transient terminal hydride at this iron site, which, however is difficult to stabilize. We show that the hydride intermediate forms immediately when [2Fe]H is replaced with [2Ru]H analogues through artificial maturation. Outside the protein, the [2Ru]H analogues form bridging hydrides, which rearrange to terminal hydrides after insertion into the apo-protein. H/D exchange of the hydride only occurs for [2Ru]H analogues containing the bridging amine moiety.
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Affiliation(s)
- Constanze Sommer
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Casseday P Richers
- School of Chemical Sciences, University of Illinois at Urbana-Champaign, 600 S. Goodwin Ave., Urbana, IL, 61801, USA
| | - Wolfgang Lubitz
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Thomas B Rauchfuss
- School of Chemical Sciences, University of Illinois at Urbana-Champaign, 600 S. Goodwin Ave., Urbana, IL, 61801, USA
| | - Edward J Reijerse
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, 45470, Mülheim an der Ruhr, Germany
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30
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Sommer C, Richers CP, Lubitz W, Rauchfuss TB, Reijerse EJ. A [RuRu] Analogue of an [FeFe]-Hydrogenase Traps the Key Hydride Intermediate of the Catalytic Cycle. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201801914] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Constanze Sommer
- Max-Planck-Institut für Chemische Energiekonversion; Stiftstrasse 34-36 45470 Mülheim an der Ruhr Germany
| | - Casseday P. Richers
- School of Chemical Sciences; University of Illinois at Urbana-Champaign; 600 S. Goodwin Ave. Urbana IL 61801 USA
| | - Wolfgang Lubitz
- Max-Planck-Institut für Chemische Energiekonversion; Stiftstrasse 34-36 45470 Mülheim an der Ruhr Germany
| | - Thomas B. Rauchfuss
- School of Chemical Sciences; University of Illinois at Urbana-Champaign; 600 S. Goodwin Ave. Urbana IL 61801 USA
| | - Edward J. Reijerse
- Max-Planck-Institut für Chemische Energiekonversion; Stiftstrasse 34-36 45470 Mülheim an der Ruhr Germany
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31
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Senger M, Mebs S, Duan J, Shulenina O, Laun K, Kertess L, Wittkamp F, Apfel UP, Happe T, Winkler M, Haumann M, Stripp ST. Protonation/reduction dynamics at the [4Fe-4S] cluster of the hydrogen-forming cofactor in [FeFe]-hydrogenases. Phys Chem Chem Phys 2018; 20:3128-3140. [PMID: 28884175 DOI: 10.1039/c7cp04757f] [Citation(s) in RCA: 62] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The [FeFe]-hydrogenases of bacteria and algae are the most efficient hydrogen conversion catalysts in nature. Their active-site cofactor (H-cluster) comprises a [4Fe-4S] cluster linked to a unique diiron site that binds three carbon monoxide (CO) and two cyanide (CN-) ligands. Understanding microbial hydrogen conversion requires elucidation of the interplay of proton and electron transfer events at the H-cluster. We performed real-time spectroscopy on [FeFe]-hydrogenase protein films under controlled variation of atmospheric gas composition, sample pH, and reductant concentration. Attenuated total reflection Fourier-transform infrared spectroscopy was used to monitor shifts of the CO/CN- vibrational bands in response to redox and protonation changes. Three different [FeFe]-hydrogenases and several protein and cofactor variants were compared, including element and isotopic exchange studies. A protonated equivalent (HoxH) of the oxidized state (Hox) was found, which preferentially accumulated at acidic pH and under reducing conditions. We show that the one-electron reduced state Hred' represents an intrinsically protonated species. Interestingly, the formation of HoxH and Hred' was independent of the established proton pathway to the diiron site. Quantum chemical calculations of the respective CO/CN- infrared band patterns favored a cysteine ligand of the [4Fe-4S] cluster as the protonation site in HoxH and Hred'. We propose that proton-coupled electron transfer facilitates reduction of the [4Fe-4S] cluster and prevents premature formation of a hydride at the catalytic diiron site. Our findings imply that protonation events both at the [4Fe-4S] cluster and at the diiron site of the H-cluster are important in the hydrogen conversion reaction of [FeFe]-hydrogenases.
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Affiliation(s)
- Moritz Senger
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany.
| | - Stefan Mebs
- Department of Physics, Biophysics of Metalloenzymes, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany.
| | - Jifu Duan
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum, 44801 Bochum, Germany.
| | - Olga Shulenina
- Faculty of Physics, St. Petersburg State University, 198504 St. Petersburg, Russian Federation
| | - Konstantin Laun
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany.
| | - Leonie Kertess
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum, 44801 Bochum, Germany.
| | - Florian Wittkamp
- Faculty of Chemistry and Biochemistry, Inorganic Chemistry I, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Ulf-Peter Apfel
- Faculty of Chemistry and Biochemistry, Inorganic Chemistry I, Ruhr-Universität Bochum, 44801 Bochum, Germany
| | - Thomas Happe
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum, 44801 Bochum, Germany.
| | - Martin Winkler
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum, 44801 Bochum, Germany.
| | - Michael Haumann
- Department of Physics, Biophysics of Metalloenzymes, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany.
| | - Sven T Stripp
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, Fachbereich Physik, Arnimallee 14, 14195 Berlin, Germany.
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Ferentinos E, Chatziefthimiou S, Boudalis AK, Pissas M, Mathies G, Gast P, Groenen EJJ, Sanakis Y, Kyritsis P. The [Fe{(SePPh2
)2
N}2
] Complex Revisited: X-ray Crystallography, Magnetometry, High-Frequency EPR, and Mössbauer Studies Reveal Its Tetrahedral FeII
Se4
Coordination Sphere. Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201701459] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Eleftherios Ferentinos
- Inorganic Chemistry Laboratory; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis 15771 Athens Greece
| | - Spyros Chatziefthimiou
- Institute of Nanoscience and Nanotechnology; N.C.S.R. “Demokritos”; Aghia Paraskevi 15310 Attiki Greece
| | - Athanassios K. Boudalis
- Institute of Nanoscience and Nanotechnology; N.C.S.R. “Demokritos”; Aghia Paraskevi 15310 Attiki Greece
| | - Michael Pissas
- Institute of Nanoscience and Nanotechnology; N.C.S.R. “Demokritos”; Aghia Paraskevi 15310 Attiki Greece
| | - Guinevere Mathies
- Huygens-Kamerlingh Onnes Laboratory; Department of Physics; Leiden University; Niels Bohrweg 2 2333 CA Leiden The Netherlands
| | - Peter Gast
- Huygens-Kamerlingh Onnes Laboratory; Department of Physics; Leiden University; Niels Bohrweg 2 2333 CA Leiden The Netherlands
| | - Edgar J. J. Groenen
- Huygens-Kamerlingh Onnes Laboratory; Department of Physics; Leiden University; Niels Bohrweg 2 2333 CA Leiden The Netherlands
| | - Yiannis Sanakis
- Institute of Nanoscience and Nanotechnology; N.C.S.R. “Demokritos”; Aghia Paraskevi 15310 Attiki Greece
| | - Panayotis Kyritsis
- Inorganic Chemistry Laboratory; Department of Chemistry; National and Kapodistrian University of Athens; Panepistimiopolis 15771 Athens Greece
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33
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Mebs S, Kositzki R, Duan J, Kertess L, Senger M, Wittkamp F, Apfel UP, Happe T, Stripp ST, Winkler M, Haumann M. Hydrogen and oxygen trapping at the H-cluster of [FeFe]-hydrogenase revealed by site-selective spectroscopy and QM/MM calculations. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2018; 1859:28-41. [DOI: 10.1016/j.bbabio.2017.09.003] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2017] [Revised: 08/31/2017] [Accepted: 09/13/2017] [Indexed: 12/11/2022]
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35
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Wittkamp F, Senger M, Stripp ST, Apfel UP. [FeFe]-Hydrogenases: recent developments and future perspectives. Chem Commun (Camb) 2018; 54:5934-5942. [DOI: 10.1039/c8cc01275j] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
[FeFe]-Hydrogenases are the most efficient enzymes for catalytic hydrogen turnover.
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Affiliation(s)
- F. Wittkamp
- Faculty of Chemistry and Biochemistry
- Ruhr-Universität Bochum
- 44801 Bochum
- Germany
| | - M. Senger
- Department of Physics
- Freie Universität Berlin
- 1495 Berlin
- Germany
| | - S. T. Stripp
- Department of Physics
- Freie Universität Berlin
- 1495 Berlin
- Germany
| | - U.-P. Apfel
- Faculty of Chemistry and Biochemistry
- Ruhr-Universität Bochum
- 44801 Bochum
- Germany
- Fraunhofer UMSICHT
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36
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Kertess L, Adamska-Venkatesh A, Rodríguez-Maciá P, Rüdiger O, Lubitz W, Happe T. Influence of the [4Fe-4S] cluster coordinating cysteines on active site maturation and catalytic properties of C. reinhardtii [FeFe]-hydrogenase. Chem Sci 2017; 8:8127-8137. [PMID: 29568461 PMCID: PMC5855289 DOI: 10.1039/c7sc03444j] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 10/05/2017] [Indexed: 11/24/2022] Open
Abstract
Alteration of the [4Fe–4S] cluster coordinating cysteines reveals their individual importance for [4Fe–4S] cluster binding, [2Fe] insertion and catalytic turnover.
[FeFe]-Hydrogenases catalyze the evolution and oxidation of hydrogen using a characteristic cofactor, termed the H-cluster. This comprises an all cysteine coordinated [4Fe–4S] cluster and a unique [2Fe] moiety, coupled together via a single cysteine. The coordination of the [4Fe–4S] cluster in HydA1 from Chlamydomonas reinhardtii was altered by single exchange of each cysteine (C115, C170, C362, and C366) with alanine, aspartate, or serine using site-directed mutagenesis. In contrast to cysteine 115, the other three cysteines were found to be dispensable for stable [4Fe–4S] cluster incorporation based on iron determination, UV/vis spectroscopy and electron paramagnetic resonance. However, the presence of a preformed [4Fe–4S] cluster alone does not guarantee stable incorporation of the [2Fe] cluster. Only variants C170D, C170S, C362D, and C362S showed characteristic signals for an inserted [2Fe] cluster in Fourier-transform infrared spectroscopy. Hydrogen evolution and oxidation were observed for these variants in solution based assays and protein-film electrochemistry. Catalytic activity was lowered for all variants and the ability to operate in either direction was also influenced.
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Affiliation(s)
- Leonie Kertess
- AG Photobiotechnologie , Lehrstuhl für Biochemie der Pflanzen , Ruhr Universität Bochum , Universitätsstr. 150 , 44801 Bochum , Germany .
| | - Agnieszka Adamska-Venkatesh
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany
| | - Patricia Rodríguez-Maciá
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany
| | - Olaf Rüdiger
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion , Stiftstrasse 34-36 , 45470 Mülheim an der Ruhr , Germany
| | - Thomas Happe
- AG Photobiotechnologie , Lehrstuhl für Biochemie der Pflanzen , Ruhr Universität Bochum , Universitätsstr. 150 , 44801 Bochum , Germany .
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37
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Senger M, Laun K, Wittkamp F, Duan J, Haumann M, Happe T, Winkler M, Apfel UP, Stripp ST. Protonengekoppelte Reduktion des katalytischen [4Fe-4S]-Zentrums in [FeFe]-Hydrogenasen. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201709910] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Moritz Senger
- Fakultät für Physik; Freie Universität Berlin; Arnimallee 14 1495 Berlin Deutschland
| | - Konstantin Laun
- Fakultät für Physik; Freie Universität Berlin; Arnimallee 14 1495 Berlin Deutschland
| | - Florian Wittkamp
- Fakultät für Chemie und Biochemie; Ruhr-Universität Bochum; Universitätstraße 150 44801 Bochum Deutschland
| | - Jifu Duan
- Fakultät für Biologie und Biotechnologie; Ruhr-Universität Bochum; Universitätsstraße 150 44801 Bochum Deutschland
| | - Michael Haumann
- Fakultät für Physik; Freie Universität Berlin; Arnimallee 14 1495 Berlin Deutschland
| | - Thomas Happe
- Fakultät für Biologie und Biotechnologie; Ruhr-Universität Bochum; Universitätsstraße 150 44801 Bochum Deutschland
| | - Martin Winkler
- Fakultät für Biologie und Biotechnologie; Ruhr-Universität Bochum; Universitätsstraße 150 44801 Bochum Deutschland
| | - Ulf-Peter Apfel
- Fakultät für Chemie und Biochemie; Ruhr-Universität Bochum; Universitätstraße 150 44801 Bochum Deutschland
| | - Sven T. Stripp
- Fakultät für Physik; Freie Universität Berlin; Arnimallee 14 1495 Berlin Deutschland
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38
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Senger M, Laun K, Wittkamp F, Duan J, Haumann M, Happe T, Winkler M, Apfel UP, Stripp ST. Proton-Coupled Reduction of the Catalytic [4Fe-4S] Cluster in [FeFe]-Hydrogenases. Angew Chem Int Ed Engl 2017; 56:16503-16506. [PMID: 29072356 DOI: 10.1002/anie.201709910] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2017] [Revised: 10/23/2017] [Indexed: 12/25/2022]
Abstract
In nature, [FeFe]-hydrogenases catalyze the uptake and release of molecular hydrogen (H2 ) at a unique iron-sulfur cofactor. The absence of an electrochemical overpotential in the H2 release reaction makes [FeFe]-hydrogenases a prime example of efficient biocatalysis. However, the molecular details of hydrogen turnover are not yet fully understood. Herein, we characterize the initial one-electron reduction of [FeFe]-hydrogenases by infrared spectroscopy and electrochemistry and present evidence for proton-coupled electron transport during the formation of the reduced state Hred'. Charge compensation stabilizes the excess electron at the [4Fe-4S] cluster and maintains a conservative configuration of the diiron site. The role of Hred' in hydrogen turnover and possible implications on the catalytic mechanism are discussed. We propose that regulation of the electronic properties in the periphery of metal cofactors is key to orchestrating multielectron processes.
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Affiliation(s)
- Moritz Senger
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 1495, Berlin, Germany
| | - Konstantin Laun
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 1495, Berlin, Germany
| | - Florian Wittkamp
- Faculty of Chemistry and Biochemistry, Ruhr-Universität Bochum, Universitätstrasse 150, 44801, Bochum, Germany
| | - Jifu Duan
- Faculty of Biology and Biotechnology, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801, Bochum, Germany
| | - Michael Haumann
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 1495, Berlin, Germany
| | - Thomas Happe
- Faculty of Biology and Biotechnology, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801, Bochum, Germany
| | - Martin Winkler
- Faculty of Biology and Biotechnology, Ruhr-Universität Bochum, Universitätsstrasse 150, 44801, Bochum, Germany
| | - Ulf-Peter Apfel
- Faculty of Chemistry and Biochemistry, Ruhr-Universität Bochum, Universitätstrasse 150, 44801, Bochum, Germany
| | - Sven T Stripp
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 1495, Berlin, Germany
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39
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Mebs S, Senger M, Duan J, Wittkamp F, Apfel UP, Happe T, Winkler M, Stripp ST, Haumann M. Bridging Hydride at Reduced H-Cluster Species in [FeFe]-Hydrogenases Revealed by Infrared Spectroscopy, Isotope Editing, and Quantum Chemistry. J Am Chem Soc 2017; 139:12157-12160. [PMID: 28825810 DOI: 10.1021/jacs.7b07548] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
[FeFe]-Hydrogenases contain a H2-converting cofactor (H-cluster) in which a canonical [4Fe-4S] cluster is linked to a unique diiron site with three carbon monoxide (CO) and two cyanide (CN-) ligands (e.g., in the oxidized state, Hox). There has been much debate whether reduction and hydrogen binding may result in alternative rotamer structures of the diiron site in a single (Hred) or double (Hsred) reduced H-cluster species. We employed infrared spectro-electrochemistry and site-selective isotope editing to monitor the CO/CN- stretching vibrations in [FeFe]-hydrogenase HYDA1 from Chlamydomonas reinhardtii. Density functional theory calculations yielded vibrational modes of the diatomic ligands for conceivable H-cluster structures. Correlation analysis of experimental and computational IR spectra has facilitated an assignment of Hred and Hsred to structures with a bridging hydride at the diiron site. Pronounced ligand rotation during μH binding seems to exclude Hred and Hsred as catalytic intermediates. Only states with a conservative H-cluster geometry featuring a μCO ligand are likely involved in rapid H2 turnover.
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Affiliation(s)
- Stefan Mebs
- Department of Physics, Biophysics of Metalloenzymes, Freie Universität Berlin , 14195 Berlin, Germany
| | - Moritz Senger
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin , 14195 Berlin, Germany
| | - Jifu Duan
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum , 44801 Bochum, Germany
| | - Florian Wittkamp
- Faculty of Chemistry and Biochemistry, Bioinorganic Chemistry, Ruhr-Universität Bochum , 44801 Bochum, Germany
| | - Ulf-Peter Apfel
- Faculty of Chemistry and Biochemistry, Bioinorganic Chemistry, Ruhr-Universität Bochum , 44801 Bochum, Germany
| | - Thomas Happe
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum , 44801 Bochum, Germany
| | - Martin Winkler
- Faculty of Biology and Biotechnology, Photobiotechnology, Ruhr-Universität Bochum , 44801 Bochum, Germany
| | - Sven T Stripp
- Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin , 14195 Berlin, Germany
| | - Michael Haumann
- Department of Physics, Biophysics of Metalloenzymes, Freie Universität Berlin , 14195 Berlin, Germany
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40
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Sawyer A, Bai Y, Lu Y, Hemschemeier A, Happe T. Compartmentalisation of [FeFe]-hydrogenase maturation in Chlamydomonas reinhardtii. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 90:1134-1143. [PMID: 28295776 DOI: 10.1111/tpj.13535] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 03/01/2017] [Accepted: 03/06/2017] [Indexed: 06/06/2023]
Abstract
Molecular hydrogen (H2 ) can be produced in green microalgae by [FeFe]-hydrogenases as a direct product of photosynthesis. The Chlamydomonas reinhardtii hydrogenase HYDA1 contains a catalytic site comprising a classic [4Fe4S] cluster linked to a unique 2Fe sub-cluster. From in vitro studies it appears that the [4Fe4S] cluster is incorporated first by the housekeeping FeS cluster assembly machinery, followed by the 2Fe sub-cluster, whose biosynthesis requires the specific maturases HYDEF and HYDG. To investigate the maturation process in vivo, we expressed HYDA1 from the C. reinhardtii chloroplast and nuclear genomes (with and without a chloroplast transit peptide) in a hydrogenase-deficient mutant strain, and examined the cellular enzymatic hydrogenase activity, as well as in vivo H2 production. The transformants expressing HYDA1 from the chloroplast genome displayed levels of H2 production comparable to the wild type, as did the transformants expressing full-length HYDA1 from the nuclear genome. In contrast, cells equipped with cytoplasm-targeted HYDA1 produced inactive enzyme, which could only be activated in vitro after reconstitution of the [4Fe4S] cluster. This indicates that the HYDA1 FeS cluster can only be built by the chloroplastic FeS cluster assembly machinery. Further, the expression of a bacterial hydrogenase gene, CPI, from the C. reinhardtii chloroplast genome resulted in H2 -producing strains, demonstrating that a hydrogenase with a very different structure can fulfil the role of HYDA1 in vivo and that overexpression of foreign hydrogenases in C. reinhardtii is possible. All chloroplast transformants were stable and no toxic effects were seen from HYDA1 or CPI expression.
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Affiliation(s)
- Anne Sawyer
- AG Photobiotechnologie, Lehrstuhl für Biochemie der Pflanzen, Fakultät für Biologie und Biotechnologie, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Yu Bai
- AG Photobiotechnologie, Lehrstuhl für Biochemie der Pflanzen, Fakultät für Biologie und Biotechnologie, Ruhr-Universität Bochum, 44801, Bochum, Germany
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Yinghua Lu
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China
| | - Anja Hemschemeier
- AG Photobiotechnologie, Lehrstuhl für Biochemie der Pflanzen, Fakultät für Biologie und Biotechnologie, Ruhr-Universität Bochum, 44801, Bochum, Germany
| | - Thomas Happe
- AG Photobiotechnologie, Lehrstuhl für Biochemie der Pflanzen, Fakultät für Biologie und Biotechnologie, Ruhr-Universität Bochum, 44801, Bochum, Germany
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Abstract
We aimed to find some specific pathways that can be used to predict the stage of lung adenocarcinoma.RNA-Seq expression profile data and clinical data of lung adenocarcinoma (stage I [37], stage II 161], stage III [75], and stage IV [45]) were obtained from the TCGA dataset. The differentially expressed genes were merged, correlation coefficient matrix between genes was constructed with correlation analysis, and unsupervised clustering was carried out with hierarchical clustering method. The specific coexpression network in every stage was constructed with cytoscape software. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis was performed with KOBAS database and Fisher exact test. Euclidean distance algorithm was used to calculate total deviation score. The diagnostic model was constructed with SVM algorithm.Eighteen specific genes were obtained by getting intersection of 4 group differentially expressed genes. Ten significantly enriched pathways were obtained. In the distribution map of 10 pathways score in different groups, degrees that sample groups deviated from the normal level were as follows: stage I < stage II < stage III < stage IV. The pathway score of 4 stages exhibited linear change in some pathways, and the score of 1 or 2 stages were significantly different from the rest stages in some pathways. There was significant difference between dead and alive for these pathways except thyroid hormone signaling pathway.Those 10 pathways are associated with the development of lung adenocarcinoma and may be able to predict different stages of it. Furthermore, these pathways except thyroid hormone signaling pathway may be able to predict the prognosis.
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42
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Adam D, Bösche L, Castañeda-Losada L, Winkler M, Apfel UP, Happe T. Sunlight-Dependent Hydrogen Production by Photosensitizer/Hydrogenase Systems. CHEMSUSCHEM 2017; 10:894-902. [PMID: 27976835 DOI: 10.1002/cssc.201601523] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 12/05/2016] [Indexed: 06/06/2023]
Abstract
We report a sustainable in vitro system for enzyme-based photohydrogen production. The [FeFe]-hydrogenase HydA1 from Chlamydomonas reinhardtii was tested for photohydrogen production as a proton-reducing catalyst in combination with eight different photosensitizers. Using the organic dye 5-carboxyeosin as a photosensitizer and plant-type ferredoxin PetF as an electron mediator, HydA1 achieves the highest light-driven turnover number (TONHydA1 ) yet reported for an enzyme-based in vitro system (2.9×106 mol(H2 ) mol(cat)-1 ) and a maximum turnover frequency (TOFHydA1 ) of 550 mol(H2 ) mol(HydA1)-1 s-1 . The system is fueled very effectively by ambient daylight and can be further simplified by using 5-carboxyeosin and HydA1 as a two-component photosensitizer/biocatalyst system without an additional redox mediator.
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Affiliation(s)
- David Adam
- Department of Biology and Biotechnology, AG Photobiotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Lisa Bösche
- Department of Biology and Biotechnology, AG Photobiotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Leonardo Castañeda-Losada
- Department of Chemistry and Biochemistry, Ruhr-University Bochum, Chair of Inorganic Chemistry I, Universitätsstraße 150, 44801, Bochum, Germany
| | - Martin Winkler
- Department of Biology and Biotechnology, AG Photobiotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
| | - Ulf-Peter Apfel
- Department of Chemistry and Biochemistry, Ruhr-University Bochum, Chair of Inorganic Chemistry I, Universitätsstraße 150, 44801, Bochum, Germany
| | - Thomas Happe
- Department of Biology and Biotechnology, AG Photobiotechnology, Ruhr-University Bochum, Universitätsstraße 150, 44801, Bochum, Germany
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Abul-Futouh H, El-khateeb M, Görls H, Asali KJ, Weigand W. Selenium makes the difference: protonation of [FeFe]-hydrogenase mimics with diselenolato ligands. Dalton Trans 2017; 46:2937-2947. [DOI: 10.1039/c7dt00057j] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthetic models of the active site of an [FeFe]-hydrogenase containing a Sn atom in the bridgehead of the diselenato ligand, namely [Fe2(CO)6{μ-(SeCH2Se)SnMe2}],3and [Fe2(CO)6{μ-(SeCH2)2SnMe2}],4have been synthesized and characterized by spectroscopic methods.
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Affiliation(s)
- Hassan Abul-Futouh
- Institut für Anorganische und Analytische Chemie
- Friedrich-Schiller-Universität Jena
- 07743 Jena
- Germany
| | - Mohammad El-khateeb
- Chemistry Department
- Jordan University of Science and Technology
- Irbid 22110
- Jordan
| | - Helmar Görls
- Institut für Anorganische und Analytische Chemie
- Friedrich-Schiller-Universität Jena
- 07743 Jena
- Germany
| | - Khalil Jamil Asali
- Chemistry Department
- Jordan University of Science and Technology
- Irbid 22110
- Jordan
| | - Wolfgang Weigand
- Institut für Anorganische und Analytische Chemie
- Friedrich-Schiller-Universität Jena
- 07743 Jena
- Germany
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Wöhler-BASF-Nachwuchspreis: U.-P. Apfel / Wheland-Medaille: J. P. Maier / MacArthur Fellowship: J.-Q. Yu / Sonderpreis des FCI: H. Maier. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201608900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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45
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Wöhler-BASF Early-Career Award: U.-P. Apfel / Wheland Medal: J. P. Maier / MacArthur Fellowship: J.-Q. Yu / FCI Special Prize: H. Maier. Angew Chem Int Ed Engl 2016; 55:14205. [DOI: 10.1002/anie.201608900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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