Constitutional Dynamics of Metal-Organic Motifs on a Au(111) Surface

Direct aryl-aryl coupling of pentacene on Au(110)

Selective C-H bond activation of polycyclic aromatic hydrocarbons is challenging due to the relatively high bond dissociation energy and the existence of multiple equivalent C-H sites. Herein, we report a scanning tunneling microscopy study on the covalent coupling of pentacene molecules on Au(110) surfaces. The missing-row reconstruction of Au(110) surfaces strengthens the molecule-substrate interactions. At elevated temperatures (470-520 K), pentacenes undergo direct aryl-aryl coupling via C-H bond activation. Due to the anisotropic feature of the reconstructed Au(110) surface, pentacenes are preferentially oriented parallel or perpendicular, making the linear and T-shaped dimers the predominant products. Based on density functional theory calculations, the aryl C-H bond activation barrier is reduced to 1.42 eV on Au(110)-(1 × 3) reconstructed surfaces, at which the extra row of gold atoms located in the (1 × 3) reconstructed grooves plays a key role.

On-Surface Fabrication of Bimetallic Metal-Organic Frameworks through the Synergy and Competition among Noncovalent Interactions

Two-dimensional metal-organic frameworks (2D-MOFs) are attracting more attention due to their unique properties. Various 2D-MOF structures have been fabricated on surfaces in which either only one kind of metal was incorporated or only one kind of noncovalent interaction was involved in a bimetallic network. However, 2D-MOFs involving different kinds of noncovalent interactions and multiple metal components are more complex and less predictable. Here, we choose the uracil (U) molecule together with alkali metals [sodium (Na) and cesium (Cs)] and a transition metal [iron (Fe)] as model systems and successfully construct two kinds of bimetallic 2D-MOFs through the synergy and competition among noncovalent interactions, which is revealed by the high-resolution scanning tunneling microscopy imaging and density functional theory calculations. Such a systematic study may help to improve our fundamental understanding of the interaction mechanism of noncovalent bonds and, moreover, lead to further investigations of the unprecedented functions of surface-supported 2D-MOF structures.

Structural Phase Transitions of Molecular Self-Assembly Driven by Nonbonded Metal Adatoms

The involvement of metal atoms in molecular assemblies has enriched the structural and functional diversity of two-dimensional supramolecular networks, where metal atoms are incorporated into the architecture via coordination or ionic bonding. Here we present a temperature-variable study of the self-assembly of the 1,3,5-tribromobenzene (TriBB) molecule on Cu(111) that reveals the involvement of nonbonded adatoms in the molecular matrix. By means of scanning tunneling microscopy and noncontact atomic force microscopy, we demonstrate the molecular-level details of a phase transition of TriBB assembly from the close-packed to porous honeycomb structures at 78 K. This is an unexpected transformation because the close-packed phase is thermodynamically favored in view of its higher molecular density and more intermolecular bonds as compared to the honeycomb lattice. A comprehensive density functional theory calculation suggests that Cu adatoms should be involved in the formation of the honeycomb network, where the Cu adatoms help stabilize the molecular assembly via enhanced van der Waals interactions between TriBB molecules and the underlying substrate. Both calculation and experimental results suggest no chemical bonding or direct charge transfer between the adatoms and the molecules, thus the electronic characteristics of the Cu adatoms trapped in the molecular confinement are close to the intrinsic ones on a clean metal surface and different from those in the traditional coordination-bonded framework. The nonbonded metal adatoms embedded self-assemblies may complement the metal-organic coordination system and can be used to tailor the chemical reactivity and electronic properties of supramolecular structures.

Hydrogen bond guided synthesis of close-packed one-dimensional graphdiyne on the Ag(111) surface

Aided by hydrogen bonding, alkyne and oxazole functionalized precursors undergo uniform self-assembly, which serves as a template for the fabrication of one-dimensional graphdiyne-like wires on the Ag(111) surface.

Chlorine-assisted fabrication of hybrid supramolecular structures via electrostatic interactions

Supramolecular self-assembly is a spontaneous process relying on non-covalent intermolecular interactions. Among them, electrostatic interactions generated by organic molecules interacting with alkali metals and/or halogens play an important role in structural formation. Herein, we choose cytosine and NaCl as a model system and, from the interplay of STM imaging and DFT calculations, a hybrid network composed of both metal-organic and pure organic motifs interlinked by Cl ions via electrostatic interactions is observed on the Au(111) surface. Moreover, the occasionally missing Cl ions in connections are accompanied by the absence of adjacent organic motifs resulting in defects of the network. This study successfully demonstrates the generality of salt providing both cations and anions simultaneously in the modulation of the structure and provides fundamental knowledge on the formation of hybrid structures as well as the function of halogens in affecting the self-assembly process.

Linear array of cesium atoms assisted by uracil molecules on Au(111)

A series of metal–organic U + Cs structures are achieved in which the Cs cations tend to form linear arrays.

Two-dimensional self-assembled nanostructures of nucleobases and their related derivatives on Au(111)

The construction of two-dimensional (2D) self-assembled nanostructures has been one of the considerably interesting areas of on-surface chemistry in the past few decades, and has benefited from the rapid development and improvement of scanning probe microscopy techniques. In this research field, many attempts have been made in the controllable fabrication of well-ordered and multifunctional surface nanostructures, which attracted interest because of the prospect for artificial design of functional molecular nanodevices. DNA and RNA are considered to be programmable self-assembly systems and it is possible to use their base sequences to encode instructions for assembly in a predetermined fashion at the nanometer scale. As important constituents of nucleic acids, nucleobases, with intrinsic functional groups for hydrogen bonding, coordination bonding, and electrostatic interactions, can be employed as a potential system for the versatile construction of various biomolecular nanostructures, which may be used to structure the self-assembly of DNA-based artificial molecular constructions and play an important role in novel biosensors based on surface functionalization. In this article, we will review the recent progress of on-surface self-assembly of nucleobases and their derivatives together with different reactants (e.g., metals, halogens, salts and water), and as a result, various 2D surface nanostructures are summarized.

Tuning the ease of formation of on-surface metal-adatom coordination polymers featuring diketones

We use pyrene-4,5,9,10-tetraketone molecules with substituents of varying bulkiness in the 2,7 positions to probe the generality and versatility of the previously reported on-surface coordination of two diketones with a single metal atom, leading to one-dimensional coordination polymers. Three different low index surfaces of group 11 metals (Cu, Ag and Au) are used to provide both the support and the metal atoms for metal-organic coordination. By real space visualisation with single molecule resolution employing scanning tunnelling microscopy we investigate the molecular self-assembly and show how this can be substantiated with the formation of metal-organic linear and cyclic oligomers, depending on the employed substrate.

On-Surface Synthesis of Adenine Oligomers via Ullmann Reaction

Despite the fact that DNA bases have been well-studied on surface, the on-surface synthesis of one-dimensional DNA analogs through in situ reactions is still an interesting topic to be investigated. Herein, from the interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations, we have delicately designed a halogenated derivative of adenine as precursor to realize the combination of DNA bases and Ullmann reaction, and then successfully synthesized adenine oligomers on Au(111) via Ullmann coupling. This model system provides a possible bottom-up strategy of fabricating adenine oligomers on surface, which may further give access to man-made DNA strands with multiple bases.

Competition between Hydrogen Bonds and Coordination Bonds Steered by the Surface Molecular Coverage

In addition to the choices of metal atoms/molecular linkers and surfaces, several crucial parameters, including surface temperature, molecular stoichiometric ratio, electrical stimulation, concentration, and solvent effect for liquid/solid interfaces, have been demonstrated to play key roles in the formation of on-surface self-assembled supramolecular architectures. Moreover, self-assembled structural transformations frequently occur in response to a delicate control over those parameters, which, in most cases, involve either conversions from relatively weak interactions to stronger ones (e.g., hydrogen bonds to coordination bonds) or transformations between the comparable interactions (e.g., different coordination binding modes or hydrogen bonding configurations). However, intermolecular bond conversions from relatively strong coordination bonds to weak hydrogen bonds were rarely reported. Moreover, to our knowledge, a reversible conversion between hydrogen bonds and coordination bonds has not been demonstrated before. Herein, we have demonstrated a facile strategy for the regulation of stepwise intermolecular bond conversions from the metal-organic coordination bond (Cu-N) to the weak hydrogen bond (CH···N) by increasing the surface molecular coverage. From the DFT calculations we quantify that the loss in intermolecular interaction energy is compensated by the increased molecular adsorption energy at higher molecular coverage. Moreover, we achieved a reversible conversion from the weak hydrogen bond to the coordination bond by decreasing the surface molecular coverage.