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Zhang B, Lee H, Holstein JJ, Clever GH. Shape-Complementary Multicomponent Assembly of Low-Symmetry Co(III)Salphen-Based Coordination Cages. Angew Chem Int Ed Engl 2024; 63:e202404682. [PMID: 38573026 DOI: 10.1002/anie.202404682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Revised: 03/28/2024] [Accepted: 03/28/2024] [Indexed: 04/05/2024]
Abstract
While metal-mediated self-assembly is a popular technique to construct discrete nanosized objects, highly symmetric structures, built from one type of ligand at a time, are dominating reported systems. The tailored integration of a set of different ligands requires sophisticated approaches to avoid narcissistic separation or formation of statistical mixtures. Here, we demonstrate how the combination of three structure-guiding effects (metal-templated macrocyclization, additional bridging ligands and shape-complementarity) based on Co(III)salphen metal nodes allows for a rational and high-yielding synthesis of structurally complex, lantern-shaped cages with up to four differentiable bridges. Three new heteroleptic coordination cages based on dinuclear Co(III)salphen macrocycles were synthesized in a one-pot reaction approach and fully characterized, including single crystal X-ray analyses. One cage groups two of the same ligands, another two different ligands around a symmetric Co2-bis-salphen ring. In the most complex structure, this ring is unsymmetric, rendering all four connections between the two metal centers distinguishable. While heteroleptic assembly around Pd(II) nodes has been shown to be dynamic, beneficial for cage-to-cage transformations, assembly cascades and adaptive systems, the herein introduced cages based on kinetically more inert Co(III)salphen will be advantageous for applications in enzyme-like catalysis and molecular machinery that require enhanced structural and chemical stability.
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Affiliation(s)
- Bo Zhang
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Haeri Lee
- Department of Chemistry, Hannam University, 1646 Yuseong-daero, Yuseong-gu, Daejeon, 34054, Republic of Korea
| | - Julian J Holstein
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
| | - Guido H Clever
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Strasse 6, 44227, Dortmund, Germany
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2
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Wu K, Benchimol E, Baksi A, Clever GH. Non-statistical assembly of multicomponent [Pd 2ABCD] cages. Nat Chem 2024; 16:584-591. [PMID: 38243023 DOI: 10.1038/s41557-023-01415-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 12/07/2023] [Indexed: 01/21/2024]
Abstract
Self-assembled hosts, inspired by biological receptors and catalysts, show application potential in sustainable synthesis, energy conversion and medicine. Implementing multiple functionalities in the form of distinguishable building blocks, however, is difficult without risking narcissistic self-sorting or a statistical mess. Here we report a systematic series of integratively self-assembled heteroleptic cages in which two square-planar PdII cations are bridged by four different bis-pyridyl ligands, A, B, C and D, via synergistic effects to exclusively form a single isomer-the lantern-shaped cage [Pd2ABCD]. This self-sorting goal-forming just one out of 55 possible structures-is reached under full thermodynamic control and can be realized progressively (by combining progenitors, such as [Pd2A2C2] with [Pd2B2D2]), directly from ligands and PdII cations or by mixing all four corresponding homoleptic cages. The rational design of complex multicomponent assemblies that enables the modular incorporation of diverse chemical moieties will advance their applicability in functional nanosystems.
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Affiliation(s)
- Kai Wu
- Department of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, LIFM, IGCME, School of Chemistry, Sun Yat-Sen University, Guangzhou, China
| | - Elie Benchimol
- Department of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany
| | - Ananya Baksi
- Department of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany
- Department of Chemistry, Jadavpur University, Kolkata, India
| | - Guido H Clever
- Department of Chemistry and Chemical Biology, TU Dortmund University, Dortmund, Germany.
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3
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Abstract
Porous organic cages (POCs) are a relatively new class of low-density crystalline materials that have emerged as a versatile platform for investigating molecular recognition, gas storage and separation, and proton conduction, with potential applications in the fields of porous liquids, highly permeable membranes, heterogeneous catalysis, and microreactors. In common with highly extended porous structures, such as metal-organic frameworks (MOFs), covalent organic frameworks (COFs), and porous organic polymers (POPs), POCs possess all of the advantages of highly specific surface areas, porosities, open pore channels, and tunable structures. In addition, they have discrete molecular structures and exhibit good to excellent solubilities in common solvents, enabling their solution dispersibility and processability─properties that are not readily available in the case of the well-established, insoluble, extended porous frameworks. Here, we present a critical review summarizing in detail recent progress and breakthroughs─especially during the past five years─of all the POCs while taking a close look at their strategic design, precise synthesis, including both irreversible bond-forming chemistry and dynamic covalent chemistry, advanced characterization, and diverse applications. We highlight representative POC examples in an attempt to gain some understanding of their structure-function relationships. We also discuss future challenges and opportunities in the design, synthesis, characterization, and application of POCs. We anticipate that this review will be useful to researchers working in this field when it comes to designing and developing new POCs with desired functions.
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Affiliation(s)
- Xinchun Yang
- Faculty of Materials Science and Energy Engineering/Institute of Technology for Carbon Neutrality, Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS), Shenzhen 518055, China
- Shenzhen Key Laboratory of Energy Materials for Carbon Neutrality, Shenzhen Institute of Advanced Technology (SIAT), Chinese Academy of Sciences (CAS), Shenzhen 518055, China
| | - Zakir Ullah
- Convergence Research Center for Insect Vectors, Division of Life Sciences, College of Life Sciences and Bioengineering, Incheon National University, Incheon 22012, South Korea
| | - J Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
- Stoddart Institute of Molecular Science, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311215, China
| | - Cafer T Yavuz
- Oxide & Organic Nanomaterials for Energy & Environment Laboratory, Physical Science & Engineering (PSE), King Abdullah University of Science and Technology (KAUST), 4700 KAUST, Thuwal 23955, Saudi Arabia
- Advanced Membranes & Porous Materials Center, PSE, KAUST, 4700 KAUST, Thuwal 23955, Saudi Arabia
- KAUST Catalysis Center, PSE, KAUST, 4700 KAUST, Thuwal 23955, Saudi Arabia
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4
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Hooshmand SE, Yazdani H, Hulme C. Six‐Component Reactions and Beyond: The Nuts and Bolts. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | - Hossein Yazdani
- Independent researcher Independent Researcher Tehran IRAN (ISLAMIC REPUBLIC OF)
| | - Christopher Hulme
- The University of Arizona Department of Chemistry and Biochemistry Tucson UNITED STATES
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5
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Sustainable functionalization and modification of materials via multicomponent reactions in water. Front Chem Sci Eng 2022. [DOI: 10.1007/s11705-022-2150-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Ligation, Macrocyclization, and Simultaneous Functionalization of Peptides by Multicomponent Reactions (MCR). Methods Mol Biol 2021. [PMID: 34596847 DOI: 10.1007/978-1-0716-1689-5_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
Multicomponent reactions (MCRs) are recently expanding the plethora of solid-phase protocols for the synthesis and derivatization of peptides. Herein, we describe a solid-phase-compatible strategy based on MCRs as a powerful strategy for peptide cyclization and ligation . We illustrate, using Gramicidin S as a model peptide, how the execution of on-resin Ugi reactions enables the simultaneous backbone N-functionalization and cyclization, which are important types of derivatizations in peptide-based drug development or for incorporation of conjugation handles, or labels.
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7
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Rivera DG, Ojeda-Carralero GM, Reguera L, Van der Eycken EV. Peptide macrocyclization by transition metal catalysis. Chem Soc Rev 2020; 49:2039-2059. [PMID: 32142086 DOI: 10.1039/c9cs00366e] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Peptide macrocyclization has traditionally relied on lactam, lactone and disulfide bond-forming reactions that aim at introducing conformational constraints into small peptide sequences. With the advent of ruthenium-catalyzed ring-closing metathesis and copper-catalyzed alkyne-azide cycloaddition, peptide chemists embraced transition metal catalysis as a powerful macrocyclization tool with relevant applications in chemical biological and peptide drug discovery. This article provides a comprehensive overview of the reactivity and methodological diversification of metal-catalyzed peptide macrocyclization as a special class of late-stage peptide derivatization method. We report the evolution from classic palladium-catalyzed cross-coupling approaches to more modern oxidative versions based on C-H activation, heteroatom alkylation/arylation and annulation processes, in which aspects such as chemoselectivity and diversity generation at the ring-closing moiety became dominant over the last years. The transit from early cycloadditions and alkyne couplings as ring-closing steps to very recent 3d metal-catalyzed macrocyclization methods is highlighted. Similarly, the new trends in decarboxylative radical macrocyclizations and the interplay between photoredox and transition metal catalysis are included. This review charts future perspectives in the field hoping to encourage further progress and applications, while bringing attention to the countless possibilities available by diversifying not only the metal, but also the reactivity modes and tactics to bring peptide functional groups together and produce structurally diverse macrocycles.
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Affiliation(s)
- Daniel G Rivera
- Laboratory for Organic & Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, University of Leuven (KU Leuven), Celestijnenlaan 200F, B-3001 Leuven, Belgium. and Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba.
| | - Gerardo M Ojeda-Carralero
- Laboratory for Organic & Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, University of Leuven (KU Leuven), Celestijnenlaan 200F, B-3001 Leuven, Belgium. and Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba.
| | - Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba.
| | - Erik V Van der Eycken
- Laboratory for Organic & Microwave-Assisted Chemistry (LOMAC), Department of Chemistry, University of Leuven (KU Leuven), Celestijnenlaan 200F, B-3001 Leuven, Belgium. and Peoples' Friendship University of Russia (RUDN University), Miklukho-Maklaya Street 6, 117198 Moscow, Russia
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8
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Nenajdenko VG. Access to molecular complexity. Multicomponent reactions involving five or more components. RUSSIAN CHEMICAL REVIEWS 2020. [DOI: 10.1070/rcr5010] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The evaluation of the significance of a chemical transformation addresses many factors, including such important characteristics as the number of chemical bonds formed in one step, the reaction time, labour intensity, the cost of reactants and catalysts and so on. The amount of waste produced in the reaction has also gained increasing importance in recent years. Multicomponent reactions (MCRs) occupy a special place as a synthetic tool in modern organic chemistry. These reactions allow the synthesis of target products with complex structures, minimizing labour costs. This review summarizes the literature on multicomponent reactions involving five or more components. The data in the review are classified according to the number of reactants participating in the reaction and the types of reactions. It is worth noting that in some cases, these transformations can be a part of a domino process, making this classification difficult, if not impossible. The structural diversity of the reaction products greatly increases with increasing number of components involved in the MCR, which becomes virtually unlimited when using combinations of MCRs. This review highlights the main trends of past decades in the field of MCRs. The last two decades have witnessed an explosive growth in the number of publications in this area of chemistry.
The bibliography includes 309 references.
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10
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Yan YM, Wang ML, Liu YL, He YC. One-pot and regioselective synthesis of functionalized γ-lactams via a metal-free sequential Ugi 4CR/Intramolecular 5-exo-dig cyclization reaction. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131389] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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11
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Mongin C, Ardoy AM, Méreau R, Bassani DM, Bibal B. Singlet oxygen stimulus for switchable functional organic cages. Chem Sci 2020; 11:1478-1484. [PMID: 34094497 PMCID: PMC8150101 DOI: 10.1039/c9sc05354a] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022] Open
Abstract
Molecular cages 1a and 2a incorporating a 9,10-diphenylanthracene (DPA) chromophore were synthesized through a templated ring-closure metathesis approach that allows variation in cavity size through the introduction of up to three different pillars. Reversible Diels–Alder reaction between the DPA moiety and photogenerated singlet oxygen smoothly converted 1a and 2a to the corresponding endoperoxide cages 1b and 2b, which are converted back to 1a and 2a upon heating. Endoperoxide formation constitutes a reversible covalent signal that combines structural changes in the interior of the cage with introduction of two additional coordination sites. This results in a large modulation of the binding ability of the receptors attributed to a change in the location of the preferred binding site owing to the added coordination by the endoperoxide oxygen lone pairs. Cages 1a and 2a form complexes with sodium and cesium whose association constants are modified by 4–20 fold for Na+ and 200–450 fold for Cs+ upon conversion to 1b and 2b. DFT calculations show that in the anthracene form, cages 1a and 2a can bind 2 metal cations in their periphery so that each cation is coordinated by 4 oxygens and one amine nitrogen, whereas the endoperoxide cages 1b and 2b bind cations centrally in a geometry that favors coordination to the endoperoxide oxygens. Allosteric switchable organic cages allow variability in cation recognition.![]()
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Affiliation(s)
- Cédric Mongin
- Université de Bordeaux, CNRS, Bordeaux INP, ISM UMR 5255 351 cours de la Libération 33400 Talence France
| | - Alejandro Mendez Ardoy
- Université de Bordeaux, CNRS, Bordeaux INP, ISM UMR 5255 351 cours de la Libération 33400 Talence France
| | - Raphaël Méreau
- Université de Bordeaux, CNRS, Bordeaux INP, ISM UMR 5255 351 cours de la Libération 33400 Talence France
| | - Dario M Bassani
- Université de Bordeaux, CNRS, Bordeaux INP, ISM UMR 5255 351 cours de la Libération 33400 Talence France
| | - Brigitte Bibal
- Université de Bordeaux, CNRS, Bordeaux INP, ISM UMR 5255 351 cours de la Libération 33400 Talence France
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12
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Feng QY, Zhu J, Wang MX, Tong S. Organocatalytic Double Ugi Reaction with Statistical Amplification of Product Enantiopurity: A Linker Cleavage Approach To Access Highly Enantiopure Ugi Products. Org Lett 2019; 22:483-487. [DOI: 10.1021/acs.orglett.9b04239] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Qi-Yun Feng
- Key Laboratory of Bioorganic Phosphorous and Chemical Biology (Ministry of Education), Tsinghua University, 100084 Beijing, P. R. China
| | - Jieping Zhu
- Laboratory of Synthesis and Natural Products, Institute of Chemical Sciences and Engineering, Ecole Poltechnique Fédérale de Lausanne EPFL-SB-ISIC-LSPN, BCH 5304, 1015 Lausanne, Switzerland
| | - Mei-Xiang Wang
- Key Laboratory of Bioorganic Phosphorous and Chemical Biology (Ministry of Education), Tsinghua University, 100084 Beijing, P. R. China
| | - Shuo Tong
- Key Laboratory of Bioorganic Phosphorous and Chemical Biology (Ministry of Education), Tsinghua University, 100084 Beijing, P. R. China
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13
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Javanbakht S, Shaabani A. Multicomponent Reactions-Based Modified/Functionalized Materials in the Biomedical Platforms. ACS APPLIED BIO MATERIALS 2019; 3:156-174. [DOI: 10.1021/acsabm.9b00799] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Siamak Javanbakht
- Faculty of Chemistry, Shahid Beheshti University, G. C., P. O. Box 19396-4716, Tehran 1963963113, Iran
| | - Ahmad Shaabani
- Faculty of Chemistry, Shahid Beheshti University, G. C., P. O. Box 19396-4716, Tehran 1963963113, Iran
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14
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Adebomi V, Cohen RD, Wills R, Chavers HAH, Martin GE, Raj M. CyClick Chemistry for the Synthesis of Cyclic Peptides. Angew Chem Int Ed Engl 2019; 58:19073-19080. [DOI: 10.1002/anie.201911900] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Indexed: 01/07/2023]
Affiliation(s)
- Victor Adebomi
- Department of Chemistry and Biochemistry Auburn University Auburn AL 36830 USA
| | - Ryan D. Cohen
- Analytical Research and Development Merck & Co. Inc. Rahway NJ 07065 USA
- Department of Chemistry & Biochemistry Seton Hall University South Orange NJ 07079 USA
| | - Rachel Wills
- Department of Chemistry and Biochemistry Auburn University Auburn AL 36830 USA
| | | | - Gary E. Martin
- Analytical Research and Development Merck & Co. Inc. Rahway NJ 07065 USA
- Department of Chemistry & Biochemistry Seton Hall University South Orange NJ 07079 USA
| | - Monika Raj
- Department of Chemistry and Biochemistry Auburn University Auburn AL 36830 USA
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15
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Adebomi V, Cohen RD, Wills R, Chavers HAH, Martin GE, Raj M. CyClick Chemistry for the Synthesis of Cyclic Peptides. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201911900] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Victor Adebomi
- Department of Chemistry and Biochemistry Auburn University Auburn AL 36830 USA
| | - Ryan D. Cohen
- Analytical Research and Development Merck & Co. Inc. Rahway NJ 07065 USA
- Department of Chemistry & Biochemistry Seton Hall University South Orange NJ 07079 USA
| | - Rachel Wills
- Department of Chemistry and Biochemistry Auburn University Auburn AL 36830 USA
| | | | - Gary E. Martin
- Analytical Research and Development Merck & Co. Inc. Rahway NJ 07065 USA
- Department of Chemistry & Biochemistry Seton Hall University South Orange NJ 07079 USA
| | - Monika Raj
- Department of Chemistry and Biochemistry Auburn University Auburn AL 36830 USA
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16
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Zeng L, Sajiki H, Cui S. Multicomponent Ugi Reaction of Indole- N-carboxylic Acids: Expeditious Access to Indole Carboxamide Amino Amides. Org Lett 2019; 21:5269-5272. [PMID: 31247803 DOI: 10.1021/acs.orglett.9b01871] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A novel multicomponent Ugi-type reaction for the synthesis of indole carboxamide amino amides from aldehydes, amines, isocyanides, and indole- N-carboxylic acids, which were simply prepared from indoles and CO2, is described. This method provides an expeditious and practical access to indole tethered peptide units, along with the achievement of remarkable structural diversity and brevity. Gram-scale reaction was conducted to demonstrate the scalability, and the products could be transformed to new indole derivatives.
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Affiliation(s)
- Linwei Zeng
- Institute of Drug Discovery and Design, College of Pharmaceutical Sciences , Zhejiang University , Hangzhou 310058 , China
| | - Hironao Sajiki
- Laboratory of Organic Chemistry , Gifu Pharmaceutical University , Gifu 501-1196 , Japan
| | - Sunliang Cui
- Institute of Drug Discovery and Design, College of Pharmaceutical Sciences , Zhejiang University , Hangzhou 310058 , China
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Reguera L, Attorresi CI, Ramírez JA, Rivera DG. Steroid diversification by multicomponent reactions. Beilstein J Org Chem 2019; 15:1236-1256. [PMID: 31293671 PMCID: PMC6604710 DOI: 10.3762/bjoc.15.121] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 05/14/2019] [Indexed: 12/19/2022] Open
Abstract
Reports on structural diversification of steroids by means of multicomponent reactions (MCRs) have significantly increased over the last decade. This review covers the most relevant strategies dealing with the use of steroidal substrates in MCRs, including the synthesis of steroidal heterocycles and macrocycles as well as the conjugation of steroids to amino acids, peptides and carbohydrates. We demonstrate that steroids are available with almost all types of MCR reactive functionalities, e.g., carbonyl, carboxylic acid, alkyne, amine, isocyanide, boronic acid, etc., and that steroids are suitable starting materials for relevant MCRs such as those based on imine and isocyanide. The focus is mainly posed on proving the amenability of MCRs for the diversity-oriented derivatization of naturally occurring steroids and the construction of complex steroid-based platforms for drug discovery, chemical biology and supramolecular chemistry applications.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Cecilia I Attorresi
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina.,CONICET - Universidad de Buenos Aires. Unidad de Microanálisis y Métodos Físicos Aplicados a Química Orgánica (UMYMFOR). Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina
| | - Javier A Ramírez
- Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires. Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina.,CONICET - Universidad de Buenos Aires. Unidad de Microanálisis y Métodos Físicos Aplicados a Química Orgánica (UMYMFOR). Ciudad Universitaria, Ciudad Autónoma de Buenos Aires, C1428EGA, Argentina
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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Sen SK, Natarajan R. Influence of Conformational Change and Interligand Hydrogen Bonding in a Chiral Metal–Organic Cage. Inorg Chem 2019; 58:7180-7188. [DOI: 10.1021/acs.inorgchem.8b03610] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Shovan Kumar Sen
- Organic and Medicinal Chemistry Division, CSIR − Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Ramalingam Natarajan
- Organic and Medicinal Chemistry Division, CSIR − Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
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19
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Reguera L, Rivera DG. Multicomponent Reaction Toolbox for Peptide Macrocyclization and Stapling. Chem Rev 2019; 119:9836-9860. [PMID: 30990310 DOI: 10.1021/acs.chemrev.8b00744] [Citation(s) in RCA: 182] [Impact Index Per Article: 36.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In the past decade, multicomponent reactions have experienced a renaissance as powerful peptide macrocyclization tools enabling the rapid creation of skeletal complexity and diversity with low synthetic cost. This review provides both a historical and modern overview of the development of the peptide multicomponent macrocyclization as a strategy capable to compete with the classic peptide cyclization methods in terms of chemical efficiency and synthetic scope. We prove that the utilization of multicomponent reactions for cyclizing peptides by either their termini or side chains provides a key advantage over those more established methods; that is, the possibility to explore the cyclic peptide chemotype space not only at the amino acid sequence but also at the ring-forming moiety. Owing to its multicomponent nature, this type of peptide cyclization process is well-suited to generate diversity at both the endo- and exo-cyclic fragments formed during the ring-closing step, which stands as a distinctive and useful characteristic for the creation and screening of cyclic peptide libraries. Examples of the novel multicomponent peptide stapling approach and heterocycle ring-forming macrocyclizations are included, along with multicomponent methods incorporating macrocyclization handles and the one-pot syntheses of macromulticyclic peptide cages. Interesting applications of this strategy in the field of drug discovery and chemical biology are provided.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
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20
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Barreto ADFS, Andrade CKZ. Synthesis of (macro)heterocycles by consecutive/repetitive isocyanide-based multicomponent reactions. Beilstein J Org Chem 2019; 15:906-930. [PMID: 31164928 PMCID: PMC6541343 DOI: 10.3762/bjoc.15.88] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 03/27/2019] [Indexed: 12/13/2022] Open
Abstract
Isocyanide-based multicomponent reactions are a versatile tool in the synthesis of heterocycles. This review describes recently developed approaches based on the combination of consecutive or repetitive isocyanide-based multicomponent reactions for the synthesis of structurally diverse heterocycles. These strategies have also allowed the synthesis of a plethora of macroheterocycles in a reduced number of steps.
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Affiliation(s)
- Angélica de Fátima S Barreto
- Universidade de Brasília, Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), 70910-970 Brasília-DF, Brazil
| | - Carlos Kleber Z Andrade
- Universidade de Brasília, Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), 70910-970 Brasília-DF, Brazil
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Ricardo MG, Llanes D, Wessjohann LA, Rivera DG. Introducing the Petasis Reaction for Late‐Stage Multicomponent Diversification, Labeling, and Stapling of Peptides. Angew Chem Int Ed Engl 2019; 58:2700-2704. [DOI: 10.1002/anie.201812620] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Revised: 12/20/2018] [Indexed: 12/26/2022]
Affiliation(s)
- Manuel G. Ricardo
- Department of Bioorganic ChemistryLeibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products ResearchFaculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
| | - Dayma Llanes
- Center for Natural Products ResearchFaculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
| | - Ludger A. Wessjohann
- Department of Bioorganic ChemistryLeibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic ChemistryLeibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products ResearchFaculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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22
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Ghashghaei O, Seghetti F, Lavilla R. Selectivity in multiple multicomponent reactions: types and synthetic applications. Beilstein J Org Chem 2019; 15:521-534. [PMID: 30873236 PMCID: PMC6404517 DOI: 10.3762/bjoc.15.46] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Accepted: 02/07/2019] [Indexed: 12/18/2022] Open
Abstract
Multiple multicomponent reactions reach an unparalleled level of connectivity, leading to highly complex adducts. Usually, only one type of transformation involving the same set of reactants takes place. However, in some occasions this is not the case. Selectivity issues then arise, and different scenarios are analyzed. The structural pattern of the reactants, the reaction design and the experimental conditions are the critical factors dictating selectivity in these processes.
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Affiliation(s)
- Ouldouz Ghashghaei
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Food Sciences and Institute of Biomedicine (IBUB), University of Barcelona, Av. de Joan XXIII, 27-31, 08028 Barcelona, Spain
| | - Francesca Seghetti
- Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, Via Belmeloro, 6, 40126, Bologna, Italy
| | - Rodolfo Lavilla
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Food Sciences and Institute of Biomedicine (IBUB), University of Barcelona, Av. de Joan XXIII, 27-31, 08028 Barcelona, Spain
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23
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Ricardo MG, Llanes D, Wessjohann LA, Rivera DG. Introducing the Petasis Reaction for Late‐Stage Multicomponent Diversification, Labeling, and Stapling of Peptides. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201812620] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Manuel G. Ricardo
- Department of Bioorganic ChemistryLeibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products ResearchFaculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
| | - Dayma Llanes
- Center for Natural Products ResearchFaculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
| | - Ludger A. Wessjohann
- Department of Bioorganic ChemistryLeibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic ChemistryLeibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products ResearchFaculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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24
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Perretti MD, Pérez-Márquez LA, García-Rodríguez R, Carrillo R. Building Covalent Molecular Capsules by Thiol-Michael Addition Click Reaction. J Org Chem 2018; 84:840-850. [DOI: 10.1021/acs.joc.8b02677] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Marcelle D. Perretti
- Instituto Universitario de Bio-Orgánica “Antonio González” (IUBO), Universidad de La Laguna, Avda. Astrofísico Fco. Sánchez 2, 38200 La Laguna, Tenerife, Spain
| | - Lidia A. Pérez-Márquez
- Instituto Universitario de Bio-Orgánica “Antonio González” (IUBO), Universidad de La Laguna, Avda. Astrofísico Fco. Sánchez 2, 38200 La Laguna, Tenerife, Spain
| | - Raúl García-Rodríguez
- GIR MIOMeT-IU Cinquima-Química Inorgánica, Facultad de Ciencias, Campus Miguel Delibes, Universidad de Valladolid, 47011 Valladolid, Spain
| | - Romen Carrillo
- Instituto Universitario de Bio-Orgánica “Antonio González” (IUBO), Universidad de La Laguna, Avda. Astrofísico Fco. Sánchez 2, 38200 La Laguna, Tenerife, Spain
- Instituto de Productos Naturales y Agrobiología (IPNA), Consejo Superior de Investigaciones Científicas (CSIC), Avda. Astrofísico Fco. Sánchez 3, 38206 La Laguna, Tenerife, Spain
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25
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Vasco AV, Méndez Y, Porzel A, Balbach J, Wessjohann LA, Rivera DG. A Multicomponent Stapling Approach to Exocyclic Functionalized Helical Peptides: Adding Lipids, Sugars, PEGs, Labels, and Handles to the Lactam Bridge. Bioconjug Chem 2018; 30:253-259. [DOI: 10.1021/acs.bioconjchem.8b00906] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Aldrin V. Vasco
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Yanira Méndez
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Andrea Porzel
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Jochen Balbach
- Institute of Physics/Biophysics and Center for Structural and Dynamics of Proteins, Martin Luther University Halle-Wittenberg, D-06120, Halle (Saale), Germany
| | - Ludger A. Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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26
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Afshari R, Shaabani A. Materials Functionalization with Multicomponent Reactions: State of the Art. ACS COMBINATORIAL SCIENCE 2018; 20:499-528. [PMID: 30106275 DOI: 10.1021/acscombsci.8b00072] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The emergence of neoteric synthetic routes for materials functionalization is an interesting phenomenon in materials chemistry. In particular, the union of materials chemistry with multicomponent reactions (MCRs) opens a new avenue leading to the realm of highly innovative functionalized architectures with unique features. MCRs have recently been recognized as considerable part of the synthetic chemist's toolbox due to their great efficiency, inherent molecular diversity, atom and pot economy along with operational simplicity. Also, MCRs can improve E-factor and mass intensity as important green chemistry metrics. By rational tuning of the materials, as well as the MCRs, wide ranges of functionalized materials can be produced with tailorable properties that can play important roles in the plethora of applications. To date, there has not reported any exclusive review of a materials functionalization with MCRs. This critical review highlights the state-of-the-art on the one-pot functionalization of carbonaceous and siliceous materials, polysaccharides, proteins, enzymes, synthetic polymers, etc., via diverse kind of MCRs like Ugi, Passerini, Petasis, Khabachnik-Fields, Biginelli, and MALI reactions through covalent or noncovalent manners. Besides the complementary discussion of synthetic routes, superior properties and detailed applicability of each functionalized material in modern technologies are discussed. Our outlook also emphasizes future strategies for this unprecedented area and their use as materials for industrial implementation. With no doubt, MCRs-functionalization of materials bridges the gap between materials science domain and applied chemistry.
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Affiliation(s)
- Ronak Afshari
- Faculty of Chemistry, Shahid Beheshti University, G. C., P.O. Box 19396-4716, Tehran 1983963113, Iran
| | - Ahmad Shaabani
- Faculty of Chemistry, Shahid Beheshti University, G. C., P.O. Box 19396-4716, Tehran 1983963113, Iran
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27
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Ghashghaei O, Caputo S, Sintes M, Revés M, Kielland N, Estarellas C, Luque FJ, Aviñó A, Eritja R, Serna-Gallego A, Marrugal-Lorenzo JA, Pachón J, Sánchez-Céspedes J, Treadwell R, de Moliner F, Vendrell M, Lavilla R. Multiple Multicomponent Reactions: Unexplored Substrates, Selective Processes, and Versatile Chemotypes in Biomedicine. Chemistry 2018; 24:14513-14521. [PMID: 29974986 DOI: 10.1002/chem.201802877] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2018] [Revised: 07/04/2018] [Indexed: 01/01/2023]
Abstract
Multiple multicomponent reactions rapidly assemble complex structures. Despite being very productive, the lack of selectivity and the reduced number of viable transformations restrict their general application in synthesis. Hereby, we describe a rationale for a selective version of these processes based in the preferential generation of intermediates which are less reactive than the initial substrates. In this way, applying the Groebke-Blackburn-Bienaymé reaction on a range of α-polyamino-polyazines, we prepared a family compact heterocyclic scaffolds with relevant applications in medicinal and biological chemistry (live cell imaging probes, selective binders for DNA quadruplexes, and antiviral agents against human adenoviruses). The approach has general character and yields complex molecular targets in a selective, tunable and direct manner.
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Affiliation(s)
- Ouldouz Ghashghaei
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Institute of, Biomedicine (IBUB), University of Barcelona, Barcelona Science Park, Baldiri Reixac 10-12, Barcelona, 08028, Spain.,CIBER-BBN, Networking Centre for Bioengineering, Biomaterials & Nanomedicine, Baldiri Reixac 10-12, Barcelona, 08028, Spain
| | - Samantha Caputo
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Institute of, Biomedicine (IBUB), University of Barcelona, Barcelona Science Park, Baldiri Reixac 10-12, Barcelona, 08028, Spain.,CIBER-BBN, Networking Centre for Bioengineering, Biomaterials & Nanomedicine, Baldiri Reixac 10-12, Barcelona, 08028, Spain
| | - Miquel Sintes
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Institute of, Biomedicine (IBUB), University of Barcelona, Barcelona Science Park, Baldiri Reixac 10-12, Barcelona, 08028, Spain.,CIBER-BBN, Networking Centre for Bioengineering, Biomaterials & Nanomedicine, Baldiri Reixac 10-12, Barcelona, 08028, Spain
| | - Marc Revés
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Institute of, Biomedicine (IBUB), University of Barcelona, Barcelona Science Park, Baldiri Reixac 10-12, Barcelona, 08028, Spain.,CIBER-BBN, Networking Centre for Bioengineering, Biomaterials & Nanomedicine, Baldiri Reixac 10-12, Barcelona, 08028, Spain
| | - Nicola Kielland
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Institute of, Biomedicine (IBUB), University of Barcelona, Barcelona Science Park, Baldiri Reixac 10-12, Barcelona, 08028, Spain.,CIBER-BBN, Networking Centre for Bioengineering, Biomaterials & Nanomedicine, Baldiri Reixac 10-12, Barcelona, 08028, Spain
| | - Carolina Estarellas
- Departament de Fisicoquímica, Facultat de Farmàcia, and IBUB, Universitat de Barcelona, Prat de la Riba 171, 08921, Santa Coloma, de Gramenet, Spain
| | - F Javier Luque
- Departament de Fisicoquímica, Facultat de Farmàcia, and IBUB, Universitat de Barcelona, Prat de la Riba 171, 08921, Santa Coloma, de Gramenet, Spain
| | - Anna Aviñó
- Department of Chemical & Biomolecular Nanotechnology, Institute for Advanced Chemistry of Catalonia (IQAC), CSIC, Jordi Girona 18-26, 08034-, Barcelona, Spain
| | - Ramón Eritja
- Department of Chemical & Biomolecular Nanotechnology, Institute for Advanced Chemistry of Catalonia (IQAC), CSIC, Jordi Girona 18-26, 08034-, Barcelona, Spain
| | - Ana Serna-Gallego
- Clinical Unit of Infectious Diseases, Microbiology and Preventive Medicine, University Hospital Virgen del Rocío/Institute of Biomedicine of, Seville (IBiS)/CSIC/, University of Seville, Spain
| | - José Antonio Marrugal-Lorenzo
- Clinical Unit of Infectious Diseases, Microbiology and Preventive Medicine, University Hospital Virgen del Rocío/Institute of Biomedicine of, Seville (IBiS)/CSIC/, University of Seville, Spain
| | - Jerónimo Pachón
- Clinical Unit of Infectious Diseases, Microbiology and Preventive Medicine, University Hospital Virgen del Rocío/, Institute of Biomedicine of Seville (IBiS)/CSIC/, University of Seville &, Department of Medicine, University of Seville, Seville, Spain
| | - Javier Sánchez-Céspedes
- Clinical Unit of Infectious Diseases, Microbiology and Preventive Medicine, University Hospital Virgen del Rocío/, Institute of Biomedicine of Seville (IBiS)/CSIC/, University of Seville &, Department of Medicine, University of Seville, Seville, Spain
| | - Ryan Treadwell
- MRC/UoE Centre for Inflammation Research, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK
| | - Fabio de Moliner
- MRC/UoE Centre for Inflammation Research, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK
| | - Marc Vendrell
- MRC/UoE Centre for Inflammation Research, The University of Edinburgh, 47 Little France Crescent, Edinburgh, EH16 4TJ, UK
| | - Rodolfo Lavilla
- Laboratory of Medicinal Chemistry, Faculty of Pharmacy and Institute of, Biomedicine (IBUB), University of Barcelona, Barcelona Science Park, Baldiri Reixac 10-12, Barcelona, 08028, Spain.,CIBER-BBN, Networking Centre for Bioengineering, Biomaterials & Nanomedicine, Baldiri Reixac 10-12, Barcelona, 08028, Spain
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28
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Reguera L, Méndez Y, Humpierre AR, Valdés O, Rivera DG. Multicomponent Reactions in Ligation and Bioconjugation Chemistry. Acc Chem Res 2018; 51:1475-1486. [PMID: 29799718 DOI: 10.1021/acs.accounts.8b00126] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Multicomponent reactions (MCRs) encompass an exciting class of chemical transformations that have proven success in almost all fields of synthetic organic chemistry. These convergent procedures incorporate three or more reactants into a final product in one pot, thus combining high levels of complexity and diversity generation with low synthetic cost. Striking applications of these processes are found in heterocycle, peptidomimetic, and natural product syntheses. However, their potential in the preparation of large macro- and biomolecular constructs has been realized just recently. This Account describes the most relevant results of our group in the utilization of MCRs for ligation/conjugation of biomolecules along with significant contributions from other laboratories that validate the utility of this special class of bioconjugation process. Thus, MCRs have proven to be efficient in the ligation of lipids to peptides and oligosaccharides as well as the ligation of steroids, carbohydrates, and fluorescent and affinity tags to peptides and proteins. In the field of glycolipids, we highlight the power of isocyanide-based MCRs with the one-pot double lipidation of glycan fragments functionalized as either the carboxylic acid or amine. In peptide chemistry, the versatility of the multicomponent ligation strategy is demonstrated in both solution-phase lipidation protocols and solid-phase procedures enabling the simultaneous lipidation and biotinylation of peptides. In addition, we show that MCRs are powerful methods for synchronized lipidation/labeling and macrocyclization of peptides, thus accomplishing in one step what usually requires long sequences. In the realm of protein bioconjugation, MCRs have also proven to be effective in labeling, site-selective modification, immobilization, and glycoconjugation processes. For example, we illustrate a successful application of multicomponent polysaccharide-protein conjugation with the preparation of multivalent glycoconjugate vaccine candidates by the ligation of two antigenic capsular polysaccharides of a pathogenic bacterium to carrier proteins. By highlighting the ability to join several biomolecules in only one synthetic operation, we hope to encourage the biomolecular chemistry community to apply this powerful chemistry to novel biomedicinal challenges.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Yanira Méndez
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Ana R. Humpierre
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
| | - Oscar Valdés
- Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca 3460000, Chile
| | - Daniel G. Rivera
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, Havana 10400, Cuba
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29
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Beuerle F, Gole B. Covalent Organic Frameworks and Cage Compounds: Design and Applications of Polymeric and Discrete Organic Scaffolds. Angew Chem Int Ed Engl 2018; 57:4850-4878. [DOI: 10.1002/anie.201710190] [Citation(s) in RCA: 313] [Impact Index Per Article: 52.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Indexed: 01/11/2023]
Affiliation(s)
- Florian Beuerle
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Germany
- Center for Nanosystems Chemistry (CNC) &; Bavarian Polymer Institute (BPI); Theodor-Boveri-Weg 97074 Würzburg Germany
| | - Bappaditya Gole
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Germany
- Center for Nanosystems Chemistry (CNC) &; Bavarian Polymer Institute (BPI); Theodor-Boveri-Weg 97074 Würzburg Germany
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30
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Beuerle F, Gole B. Kovalente organische Netzwerke und Käfigverbindungen: Design und Anwendungen von polymeren und diskreten organischen Gerüsten. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201710190] [Citation(s) in RCA: 92] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Florian Beuerle
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Deutschland
- Zentrum für Nanosystemchemie (CNC) &; Bayerisches Polymerinstitut (BPI); Theodor-Boveri-Weg 97074 Würzburg Deutschland
| | - Bappaditya Gole
- Universität Würzburg; Institut für Organische Chemie; Am Hubland 97074 Würzburg Deutschland
- Zentrum für Nanosystemchemie (CNC) &; Bayerisches Polymerinstitut (BPI); Theodor-Boveri-Weg 97074 Würzburg Deutschland
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31
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Kaldas SJ, Yudin AK. Achieving Skeletal Diversity in Peptide Macrocycles through The Use of Heterocyclic Grafts. Chemistry 2018; 24:7074-7082. [DOI: 10.1002/chem.201705418] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Sherif J. Kaldas
- Davenport Research Laboratories, Department of Chemistry; University of Toronto; 80 St. George St. Toronto ON M5S 3H6 Canada
| | - Andrei K. Yudin
- Davenport Research Laboratories, Department of Chemistry; University of Toronto; 80 St. George St. Toronto ON M5S 3H6 Canada
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32
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Hubert JG, Stepek IA, Noda H, Bode JW. Synthetic fermentation of β-peptide macrocycles by thiadiazole-forming ring-closing reactions. Chem Sci 2018; 9:2159-2167. [PMID: 29719689 PMCID: PMC5896468 DOI: 10.1039/c7sc05057g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Accepted: 01/05/2018] [Indexed: 01/12/2023] Open
Abstract
A new thiadiazole-forming macrocyclization reaction enables the one-pot synthesis of cyclic β-peptide libraries from readily accessible building blocks without additional reagents.
Macrocyclic β-peptides were efficiently prepared using a thiadiazole-forming cyclization reaction between an α-ketoacid and a thiohydrazide. The linear β-peptide precursors were assembled from isoxazolidine monomers by α-ketoacid-hydroxylamine (KAHA) ligations with a bifunctional initiator – a process we have termed ‘synthetic fermentation’ due to the analogy of producing natural product-like molecules from simpler building blocks. The linear synthetic fermentation products underwent Boc-deprotection/thiadiazole-forming macrocyclization under aqueous, acidic conditions to provide the cyclic products in a one-pot process. This reaction sequence proceeds from easily accessed initiator and monomer building blocks without the need for additional catalysts or reagents, enabling facile production of macrocyclic β-peptides, a relatively underexplored structural class.
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Affiliation(s)
- Jonathan G Hubert
- Laboratorium für Organische Chemie , Department of Chemistry and Applied Biosciences , ETH Zürich , Zürich , Switzerland 8093 . ; http://www.bode.ethz.ch
| | - Iain A Stepek
- Laboratorium für Organische Chemie , Department of Chemistry and Applied Biosciences , ETH Zürich , Zürich , Switzerland 8093 . ; http://www.bode.ethz.ch
| | - Hidetoshi Noda
- Institute of Microbial Chemistry (Bikaken) , 3-14-23 Kamiosaki, Shinagawa-ku , Tokyo 141-0021 , Japan
| | - Jeffrey W Bode
- Laboratorium für Organische Chemie , Department of Chemistry and Applied Biosciences , ETH Zürich , Zürich , Switzerland 8093 . ; http://www.bode.ethz.ch
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33
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Loya DR, Jean A, Cormier M, Fressigné C, Nejrotti S, Blanchet J, Maddaluno J, De Paolis M. Domino Ring Expansion: Regioselective Access to 9-Membered Lactones with a Fused Indole Unit from 2-Nitrophenyl-1,3-cyclohexanediones. Chemistry 2018; 24:2080-2084. [PMID: 29286174 DOI: 10.1002/chem.201705645] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Indexed: 11/10/2022]
Abstract
The domino anionic fragmentation of 2-nitrophenyl-1,3-cyclohexanediones containing an electrophilic appendage such as aldehyde and epoxide is disclosed. This reaction, initiated by a series of nucleophiles, involves the generation of an intermediate hydroxylate followed by the regioselective formation and fragmentation of an intermediate lactolate into enolate. This strategy, devoid of any protecting group, enlarges the initial ring and provides an original access to decorated 9-membered lactones with a fused indole unit.
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Affiliation(s)
- David Reyes Loya
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
| | - Alexandre Jean
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
| | - Morgan Cormier
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
| | - Catherine Fressigné
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
| | - Stefano Nejrotti
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
| | - Jérôme Blanchet
- LCMT, ENSICAEN et, Université de Caen, CNRS, 6 bd du Maréchal Juin, 14050, Caen, France
| | - Jacques Maddaluno
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
| | - Michaël De Paolis
- Normandie Université, UNIROUEN, INSA de Rouen, CNRS, Laboratoire COBRA (UMR 6014 & FR 3038), 76000, Rouen, France
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34
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Rasheed OK, Bawn C, Davies D, Raftery J, Vitorica-Yrzebal I, Pritchard R, Zhou H, Quayle P. The Synthesis of Group 10 and 11 Metal Complexes of 3,6,9-Trithia-1-(2,6)-pyridinacyclodecaphane and Their Use in A3
-Coupling Reactions. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701033] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Omer K. Rasheed
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
| | - Carlo Bawn
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
| | - David Davies
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
| | - James Raftery
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
| | | | - Robin Pritchard
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
| | - Huimin Zhou
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
| | - Peter Quayle
- School of Chemistry; University of Manchester; Oxford road M13 9Pl Manchester UK
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35
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Bartolami E, Knoops J, Bessin Y, Fossépré M, Chamieh J, Dumy P, Surin M, Ulrich S. One-Pot Self-Assembly of Peptide-Based Cage-Type Nanostructures Using Orthogonal Ligations. Chemistry 2017; 23:14323-14331. [DOI: 10.1002/chem.201702974] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Indexed: 01/14/2023]
Affiliation(s)
- Eline Bartolami
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
- Present address: Department of Organic Chemistry; University of Geneva; 30 Quai Ernest Ansermet 1211 Geneva 4 Switzerland
| | - Jérémie Knoops
- Laboratory for Chemistry of Novel Materials; University of Mons-UMONS; 20, Place du Parc 7000 Mons Belgium
| | - Yannick Bessin
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Mathieu Fossépré
- Laboratory for Chemistry of Novel Materials; University of Mons-UMONS; 20, Place du Parc 7000 Mons Belgium
| | - Joseph Chamieh
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Pascal Dumy
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
| | - Mathieu Surin
- Laboratory for Chemistry of Novel Materials; University of Mons-UMONS; 20, Place du Parc 7000 Mons Belgium
| | - Sébastien Ulrich
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247, CNRS, Université de Montpellier, ENSCM; Ecole Nationale Supérieure de Chimie de Montpellier; 8 Rue de l'Ecole Normale 34296 Montpellier cedex 5 France
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36
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Bloch WM, Clever GH. Integrative self-sorting of coordination cages based on 'naked' metal ions. Chem Commun (Camb) 2017; 53:8506-8516. [PMID: 28661517 PMCID: PMC5672845 DOI: 10.1039/c7cc03379f] [Citation(s) in RCA: 149] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Accepted: 06/22/2017] [Indexed: 12/23/2022]
Abstract
Coordination-driven self-assembly of metal ions and organic ligands has been extensively utilised over the past four decades to access a variety of nano-sized cage assemblies, with functions ranging from sensing and catalysis to drug delivery. Many of the reported examples, however, are highly symmetric architectures that contain one type of organic ligand carrying not more than a single functionality. This contrasts significantly with the level of structural and functional complexity encountered in biological macromolecular hosts, which are able to bind and chemically convert smaller molecules in their highly-decorated internal cavities. To address this disparity, rational approaches that facilitate heteroleptic assembly by regulating integrative self-sorting of metal ions and multiple ligand components have emerged. Among these, routes to access coordination cages from 'naked' metal cations that offer more than two coordination sites are still in early development, as the complexity of the self-sorted products in terms of composition and stereochemistry presents an entropic challenge. This feature article highlights recent progress in controlling integrative self-sorting of multi-component cage systems with a focus on structures composed of 'naked' metal cations and two different ligands. Once heteroleptic self-assembly strategies find a wider implementation in supramolecular design, the resultant interplay between tailored combinations of precisely positioned substituents promises enhanced functionality in nanoscale structures.
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Affiliation(s)
- Witold M Bloch
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227 Dortmund, Germany.
| | - Guido H Clever
- Department of Chemistry and Chemical Biology, TU Dortmund University, Otto-Hahn-Straße 6, 44227 Dortmund, Germany.
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Puentes AR, Morejón MC, Rivera DG, Wessjohann LA. Peptide Macrocyclization Assisted by Traceless Turn Inducers Derived from Ugi Peptide Ligation with Cleavable and Resin-Linked Amines. Org Lett 2017; 19:4022-4025. [PMID: 28704057 DOI: 10.1021/acs.orglett.7b01761] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A multicomponent approach enabling the installation of turn-inducing moieties that facilitate the macrocyclization of short and medium-size oligopeptides is described. The strategy comprises the Ugi ligation of peptide carboxylic acids and isocyanopeptides in the presence of aldehydes and acid or photolabile amines followed by cyclization and cleavage of the backbone N-substituents to render canonical cyclopeptides. Implementing the approach on solid phase with the use of Rink amide resins led to a new class of backbone amide linker strategy.
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Affiliation(s)
- Alfredo R Puentes
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
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