An Algorithm Predicting the Optimal Mechanical Response of Electronic Energy Difference

The use of mechanical forces at the molecular level has been shown to be an interesting tool for modulating different chemical and physical molecular properties. The so-called covalent mechanochemistry deals with the application of precise mechanical forces that induce specific changes in the structure, stability, reactivity, and other physical properties. The use of this kind of force to modulate photophysical properties and photochemical reactivity has also been studied. Nevertheless, the general problem of mechanical modulation of the energy gap between two electronic states has been addressed only with the development of simple theoretical models. Here, we develop and implement an algorithm providing the Largest energy Gap variation with Minimal mechanical Force (LGMF) that allows the determination of the optimal mechanical forces tuning the electronic energy gap, as well as to identify the maximum mechanical response of a molecular system to the application of any mechanical stimulus. The algorithm has been implemented for diverse molecular systems showing different degrees of flexibility. The phyton code of the algorithm is available in a public repository.

From a one-mode to a multi-mode understanding of conical intersection mediated ultrafast organic photochemical reactions

This review discusses how ultrafast organic photochemical reactions are controlled by conical intersections, highlighting that decay to the ground-state at multiple points of the intersection space results in their multi-mode character.

Mechanical Activation of Forbidden Photoreactivity in Oxa-di-π-methane Rearrangement

In this work, we demonstrate that the forbidden oxirane-type photoproduct (the cyclopropyl ketone photoproduct is the allowed one) of the oxa-di-π-methane photorearrangement can be obtained by mechanochemical control of the photoreactions. This control is achieved by the application of simple force pairs rationally chosen. By analyzing in detail the effect of the applied forces on this photoreaction, it comes to light that the mechanical action affects the diverse properties of the oxa-di-π-methane rearrangement, modifying all the steps of the reaction: (i) the initial ground-state conformers’ distribution becomes affected; (ii) the new conformational population makes the triplet excitation process to be changed, responding to the magnitude of the applied force; (iii) the stability of the different intermediates along the triplet pathway also becomes affected, changing the dynamical behavior of the system and the reaction kinetics; and (iv) the intersystem crossing also becomes strongly affected, making the forbidden oxirane-type photoproduct to decay more efficiently to the ground state. All these changes provide a complex scenario where a detailed study of the effect of applied forces is necessary in order to predict its overall effect on the photoreactivity.

E/Z Molecular Photoswitches Activated by Two-Photon Absorption: Comparison between Different Families

Nonlinear optical techniques as two-photon absorption (TPA) have raised relevant interest within the last years due to the capability to excite chromophores with photons of wavelength equal to only half of the corresponding one-photon absorption energy. At the same time, its probability being proportional to the square of the light source intensity, it allows a better spatial control of the light-induced phenomenon. Although a consistent number of experimental studies focus on increasing the TPA cross section, very few of them are devoted to the study of photochemical phenomena induced by TPA. Here, we show a design strategy to find suitable E/Z photoswitches that can be activated by TPA. A theoretical approach is followed to predict the TPA cross sections related to different excited states of various photoswitches’ families, finally concluding that protonated Schiff-bases (retinal)-like photoswitches outperform compared to the others. The donor-acceptor substitution effect is therefore rationalized for the successful TPA activatable photoswitch, in order to maximize its properties, finally also forecasting a possible application in optogenetics. Some experimental measurements are also carried out to support our conclusions.

The concept of substituent-induced force in the rationale of substituent effect

Controlling the thermochemistry and kinetics of chemical reactions is a central problem in chemistry. Among factors permitting this control, the substituent effect constitutes a remarkable example. Here, we develop a model accounting for the effect of a substituent on the potential energy surface of the substrate (i.e., substituted molecule). We show that substituents affect the substrate by exerting forces on the nuclei. These substituent-induced forces are able to develop a work when the molecule follows a given reaction path. By applying a simple mechanical model, it becomes possible to quantify this work, which corresponds to the energy variation due to the effect of the substituent along a specific pathway. Our model accounts for the Hammett equation as a particular case, providing the first non-empirical scale for the σ and ρ constants, which, in the developed model, are related to the forces exerted by the substituents (σ) and the reaction path length (ρ), giving their product (σ · ρ) the well-known variation on the reaction energy due to the substituent.

Photoisomerization-mechanism-associated excited-state hydrogen transfer in 2'-hydroxychalcone revealed by on-the-fly trajectory surface-hopping molecular dynamics simulation

By performing global-switching on-the-fly trajectory surface-hopping molecular dynamics simulation at the OM2/MRCI (14,15) quantum level, we probed the S3(ππ*) photoisomerization mechanisms associated with excited-state intramolecular hydrogen transfer for 2'-hydroxychalcone (2HC) within the interwoven conical intersection networks from four singlet electronic states (S3, S2, S1, and S0). The simulated quantum yields of 0.03 for cis-to-trans and zero for trans-to-cis photoisomerization were due to almost all the conical intersections being localized either in the cis-2HC or in trans-2HC region, and there was little chance for sampling trajectories to reach the rotation conical intersection (S1/S0) in between cis-2HC and trans-2HC that is key for reactive isomerization. The potential energy well on the S1 state in the trans-2HC region prevents trajectories from trans-to-cis photoisomerization, while the fact there is no well on S1 state in cis-2HC region opens a few chances for trajectories to reach the rotation conical intersections. The present simulation found that excited-state intramolecular hydrogen transfers in 2HC have a negative impact for reactive isomerization, and that hydrogen transfers take place on the S1 state, while back-transfer on the S0 state prevents sampling trajectories reaching rotational conical intersections. It was realized that it could be possible to enhance the quantum yield of 2HC photoisomerization by suppressing the hydrogen transfer (such as by changing an electron-donating substitution or adjusting the substitution position to decrease the acidity of the phenol group). From a perspective view of the potential energy surfaces, the theoretical design of such 2HC derivatives could enhance (control) the quantum yield by shifting the conical intersections away from the cis- and trans-region.

Modern quantum chemistry with [Open]Molcas

MOLCAS/OpenMolcas is an ab initio electronic structure program providing a large set of computational methods from Hartree-Fock and density functional theory to various implementations of multiconfigurational theory. This article provides a comprehensive overview of the main features of the code, specifically reviewing the use of the code in previously reported chemical applications as well as more recent applications including the calculation of magnetic properties from optimized density matrix renormalization group wave functions.

Unifying photocycle model for light adaptation and temporal evolution of cation conductance in channelrhodopsin-2

Although channelrhodopsin (ChR) is a widely applied light-activated ion channel, important properties such as light adaptation, photocurrent inactivation, and alteration of the ion selectivity during continuous illumination are not well understood from a molecular perspective. Herein, we address these open questions using single-turnover electrophysiology, time-resolved step-scan FTIR, and Raman spectroscopy of fully dark-adapted ChR2. This yields a unifying parallel photocycle model integrating now all so far controversial discussed data. In dark-adapted ChR2, the protonated retinal Schiff base chromophore (RSBH⁺) adopts an all-trans,C=N-anti conformation only. Upon light activation, a branching reaction into either a 13-cis,C=N-anti or a 13-cis,C=N-syn retinal conformation occurs. The anti-cycle features sequential H⁺ and Na⁺ conductance in a late M-like state and an N-like open-channel state. In contrast, the 13-cis,C=N-syn isomer represents a second closed-channel state identical to the long-lived P₄₈₀ state, which has been previously assigned to a late intermediate in a single-photocycle model. Light excitation of P₄₈₀ induces a parallel syn-photocycle with an open-channel state of small conductance and high proton selectivity. E90 becomes deprotonated in P₄₈₀ and stays deprotonated in the C=N-syn cycle. Deprotonation of E90 and successive pore hydration are crucial for late proton conductance following light adaptation. Parallel anti- and syn-photocycles now explain inactivation and ion selectivity changes of ChR2 during continuous illumination, fostering the future rational design of optogenetic tools.

Photoreactivity Control Mediated by Molecular Force Probes in Stilbene

We report theoretical and experimental evidence showing that photochemical reactivity of a chromophore can be modified by applying mechanical forces via molecular force probes. This mechanical action permits us to modulate main photochemical properties, such as fluorescence yield, excited-state lifetime, or photoisomerization quantum yield. The effect of molecular force probes can be rationalized in terms of simple mechanochemical models, establishing a qualitative framework for understanding the mechanical control of photoreactivity in stilbenes.

Ultrafast Dynamics of Encapsulated Molecules Reveals New Insight on the Photoisomerization Mechanism for Azobenzenes

Spatial confinement can have a profound impact on the dynamics of chemical reactions, especially for isomerization reactions that involve large-amplitude structural rearrangement of a molecule. This work uses ultrafast spectroscopy to probe the effects of confinement on trans → cis photoisomerization following ππ* excitation of 4-propyl stilbene and 4-propyl azobenzene encapsulated in a supramolecular host-guest complex. Transient absorption spectroscopy of the encapsulated azobenzene derivative reveals the formation of two distinct excited-state species with spectral signatures resembling the cis and trans isomers. Formation of the cis species indicates a direct excited-state isomerization channel that is not observed in cyclohexane solution. Comparison with the stilbene analogue suggests that this "hot" excited-state isomerization pathway for encapsulated azobenzene involves primarily in-plane inversion, whereas a 10-fold increase of the excited-state lifetime for the trans isomer suggests that crowding in the capsule hinders isomerization from the relaxed S₁ geometry of the trans isomer. This work provides new mechanistic insight on the relative roles of inversion and rotation in the ultrafast photoisomerization of azobenzene derivatives.

An Optical Tweezers Platform for Single Molecule Force Spectroscopy in Organic Solvents

Observation at the single molecule level has been a revolutionary tool for molecular biophysics and materials science, but single molecule studies of solution-phase chemistry are less widespread. In this work we develop an experimental platform for solution-phase single molecule force spectroscopy in organic solvents. This optical-tweezer-based platform was designed for broad chemical applicability and utilizes optically trapped core-shell microspheres, synthetic polymer tethers, and click chemistry linkages formed in situ. We have observed stable optical trapping of the core-shell microspheres in ten different solvents, and single molecule link formation in four different solvents. These experiments demonstrate how to use optical tweezers for single molecule force application in the study of solution-phase chemistry.

Mechanochemical borylation of aryldiazonium salts; merging light and ball milling

Merging of photo- and mechanochemical activation permitted studying the role of eosin Y in the borylation of aryldiazonium salts in a ball mill. Simultaneous neat grinding/irradiation of the reactants and the photocatalyst led to the formation of boronates in a molten state. On the other hand, the catalyst-free liquid-assisted grinding/irradiation reaction also led to product formation, featuring a direct photolysis pathway facilitated by substrate–solvent charge-transfer complex formation.