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Podskoczyj K, Klos A, Drewniak S, Leszczynska G. Two-step conversion of uridine and cytidine to variously C5-C functionalized analogs. Org Biomol Chem 2023; 21:2809-2815. [PMID: 36924236 DOI: 10.1039/d3ob00161j] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/11/2023]
Abstract
C5-substituted pyrimidine nucleosides are an important class of molecules that have practical use as biological probes and pharmaceuticals. Herein we report an operationally simple protocol for C5-functionalization of uridine and cytidine via transformation of underexploited 5-trifluoromethyluridine or 5-trifluoromethylcytidine, respectively. The unique reactivity of the CF3 group in the aromatic ring allowed the direct incorporation of several distinct C5-C "carbon substituents": carboxyl, nitrile, ester, amide, and amidine.
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Affiliation(s)
- Karolina Podskoczyj
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, Lodz 90-924, Poland.
| | - Anna Klos
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, Lodz 90-924, Poland.
| | - Szymon Drewniak
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, Lodz 90-924, Poland.
| | - Grazyna Leszczynska
- Institute of Organic Chemistry, Faculty of Chemistry, Lodz University of Technology, Zeromskiego 116, Lodz 90-924, Poland.
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2
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Ahmadi R, Emami S. Recent applications of vinyl sulfone motif in drug design and discovery. Eur J Med Chem 2022; 234:114255. [DOI: 10.1016/j.ejmech.2022.114255] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 02/20/2022] [Accepted: 03/03/2022] [Indexed: 01/10/2023]
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3
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Howlader H, Suzol SH, Blanco K, Martin‐Rafa L, Laverde EE, Liu Y, Wnuk SF. Purine Nucleosides with a Reactive (
β
‐Iodovinyl)sulfone or a (
β
‐Keto)sulfone Group at the C8 Position and Their Polymerase‐Catalyzed Incorporation into DNA. ASIAN J ORG CHEM 2022. [DOI: 10.1002/ajoc.202100764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Hasan Howlader
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
| | - Sazzad H. Suzol
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
| | - Kevin Blanco
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
| | - Lilian Martin‐Rafa
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
| | - Eduardo E. Laverde
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
| | - Yuan Liu
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
- Biomolecular Sciences Institute Florida International University Miami Florida 33199 U.S.A
| | - Stanislaw F. Wnuk
- Department of Chemistry and Biochemistryan Florida International University Miami Florida 33199 U.S.A
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4
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Tachallait H, Bouyahya A, Talha A, Bakri Y, Dakka N, Demange L, Benhida R, Bougrin K. Concise synthesis and antibacterial evaluation of novel 3-(1,4-disubstituted-1,2,3-triazolyl)uridine nucleosides. Arch Pharm (Weinheim) 2018; 351:e1800204. [DOI: 10.1002/ardp.201800204] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 09/11/2018] [Accepted: 09/12/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Hamza Tachallait
- Equipe de Chimie des Plantes et de Synthèse Organique et Bioorganique, Faculty of Science, Geophysics, Natural Patrimony and Green Chemistry (GEOPAC) Research Center; Mohammed V University in Rabat; Rabat Morocco
| | - Abdelhakim Bouyahya
- Laboratory of Human Pathology Biology, Faculty of Science; Mohamed V University; Rabat Morocco
| | - Aicha Talha
- Equipe de Chimie des Plantes et de Synthèse Organique et Bioorganique, Faculty of Science, Geophysics, Natural Patrimony and Green Chemistry (GEOPAC) Research Center; Mohammed V University in Rabat; Rabat Morocco
| | - Youssef Bakri
- Laboratory of Human Pathology Biology, Faculty of Science; Mohamed V University; Rabat Morocco
| | - Nadia Dakka
- Laboratory of Human Pathology Biology, Faculty of Science; Mohamed V University; Rabat Morocco
| | - Luc Demange
- Université Côte d'Azur, CNRS; Institut de Chimie de Nice; Nice France
- Département de Chimie, Université Paris Descartes, Sorbonne Paris Cité, UFR des Sciences Pharmaceutiques; UFR Biomédicale des Saints Pères; Paris France
| | - Rachid Benhida
- Université Côte d'Azur, CNRS; Institut de Chimie de Nice; Nice France
- Mohammed VI Polytechnic University; Benguerir Morocco
| | - Khalid Bougrin
- Equipe de Chimie des Plantes et de Synthèse Organique et Bioorganique, Faculty of Science, Geophysics, Natural Patrimony and Green Chemistry (GEOPAC) Research Center; Mohammed V University in Rabat; Rabat Morocco
- Mohammed VI Polytechnic University; Benguerir Morocco
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5
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Shelke YG, Yashmeen A, Gholap AVA, Gharpure SJ, Kapdi AR. Homogeneous Catalysis: A Powerful Technology for the Modification of Important Biomolecules. Chem Asian J 2018; 13:2991-3013. [PMID: 30063286 DOI: 10.1002/asia.201801020] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 07/29/2018] [Indexed: 12/17/2022]
Abstract
Homogeneous catalysis plays an important and ubiquitous role in the synthesis of simple and complex molecules, including drug compounds, natural products, and agrochemicals. In recent years, the wide-reaching importance of homogeneous catalysis has made it an indispensable tool for the modification of biomolecules, such as carbohydrates (sugars), amino acids, peptides, nucleosides, nucleotides, and steroids. Such a synthetic strategy offers several advantages, which have led to the development of new molecules of biological relevance at a rapid rate relative to the number of available synthetic methods. Given the powerful nature of homogeneous catalysis in effecting these synthetic transformations, this Focus Review has been compiled to highlight these important developments.
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Affiliation(s)
- Yogesh G Shelke
- Department of Chemistry, Indian Institute of Technology, Bombay, Main Gate Road, Powai, Mumbai, 400076, India
| | - Afsana Yashmeen
- Department of Chemistry, Institute of Chemical Technology, Nathalal Parekh Road, Matunga, Mumbai, 400019, India
| | - Aniket V A Gholap
- Department of Chemistry, Institute of Chemical Technology, Nathalal Parekh Road, Matunga, Mumbai, 400019, India
| | - Santosh J Gharpure
- Department of Chemistry, Indian Institute of Technology, Bombay, Main Gate Road, Powai, Mumbai, 400076, India
| | - Anant R Kapdi
- Department of Chemistry, Institute of Chemical Technology, Nathalal Parekh Road, Matunga, Mumbai, 400019, India
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6
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Suzol S, Howlader AH, Wen Z, Ren Y, Laverde EE, Garcia C, Liu Y, Wnuk SF. Pyrimidine Nucleosides with a Reactive (β-Chlorovinyl)sulfone or (β-Keto)sulfone Group at the C5 Position, Their Reactions with Nucleophiles and Electrophiles, and Their Polymerase-Catalyzed Incorporation into DNA. ACS OMEGA 2018; 3:4276-4288. [PMID: 29732453 PMCID: PMC5928487 DOI: 10.1021/acsomega.8b00584] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Accepted: 04/05/2018] [Indexed: 05/28/2023]
Abstract
Transition-metal-catalyzed chlorosulfonylation of 5-ethynylpyrimidine nucleosides provided (E)-5-(β-chlorovinyl)sulfones A, which undergo nucleophilic substitution with amines or thiols affording B. The treatment of vinyl sulfones A with ammonia followed by acid-catalyzed hydrolysis of the intermediary β-sulfonylvinylamines gave 5-(β-keto)sulfones C. The latter reacts with electrophiles, yielding α-carbon-alkylated or -sulfanylated analogues D. The 5'-triphosphates of A and C were incorporated into double-stranded DNA, using open and one-nucleotide gap substrates, by human or Escherichia coli DNA-polymerase-catalyzed reactions.
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Affiliation(s)
- Sazzad
H. Suzol
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - A. Hasan Howlader
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - Zhiwei Wen
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - Yaou Ren
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - Eduardo E. Laverde
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - Carol Garcia
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - Yuan Liu
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
| | - Stanislaw F. Wnuk
- Department
of Chemistry and Biochemistry and Biomolecular Sciences Institute, Florida International University, Miami, Florida 33199, United States
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7
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Kaczmarek R, Korczyński D, Królewska‐Golińska K, Wheeler KA, Chavez FA, Mikus A, Dembinski R. Organometallic Nucleosides: Synthesis and Biological Evaluation of Substituted Dicobalt Hexacarbonyl 2'-Deoxy-5-oxopropynyluridines. ChemistryOpen 2018; 7:237-247. [PMID: 29531887 PMCID: PMC5838391 DOI: 10.1002/open.201700168] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Indexed: 01/16/2023] Open
Abstract
Reactions of dicobalt octacarbonyl [Co2(CO)8] with 2'-deoxy-5-oxopropynyluridines and related compounds gave dicobalt hexacarbonyl nucleoside complexes (83-31 %). The synthetic outcomes were confirmed by X-ray structure determination of dicobalt hexacarbonyl 2'-deoxy-5-(4-hydroxybut-1-yn-1-yl)uridine, which exhibits intermolecular hydrogen bonding between a modified base and ribose. The electronic structure of this compound was characterized by the DFT calculations. The growth inhibition of HeLa and K562 cancer cell lines by organometallic nucleosides was examined and compared to that by alkynyl nucleoside precursors. Coordination of the dicobalt carbonyl moiety to the 2'-deoxy-5-alkynyluridines led to a significant increase in the cytotoxic potency. The cobalt compounds displayed antiproliferative activities with median inhibitory values (IC50) in the range of 20 to 80 μm for the HeLa cell line and 18 to 30 μm for the K562 cell line. Coordination of an acetyl-substituted cobalt nucleoside was expanded by using the 1,1-bis(diphenylphosphino)methane (dppm) ligand, which exhibited cytotoxicity at comparable levels. The formation of reactive oxygen species in the presence of cobalt compounds was determined in K562 cells. The results indicate that the mechanism of action for most antiproliferative cobalt compounds may be related to the induction of oxidative stress.
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Affiliation(s)
- Renata Kaczmarek
- Department of Bioorganic ChemistryCentre of Molecular and Macromolecular StudiesPolish Academy of SciencesSienkiewicza 11290–363ŁódźPoland
| | - Dariusz Korczyński
- Department of Bioorganic ChemistryCentre of Molecular and Macromolecular StudiesPolish Academy of SciencesSienkiewicza 11290–363ŁódźPoland
| | - Karolina Królewska‐Golińska
- Department of Bioorganic ChemistryCentre of Molecular and Macromolecular StudiesPolish Academy of SciencesSienkiewicza 11290–363ŁódźPoland
| | - Kraig A. Wheeler
- Department of ChemistryWhitworth University300 W. Hawthorne Rd.SpokaneWA99251USA
| | - Ferman A. Chavez
- Department of ChemistryOakland University146 Library DriveRochesterMI48309-4479USA
| | - Agnieszka Mikus
- Department of ChemistryOakland University146 Library DriveRochesterMI48309-4479USA
| | - Roman Dembinski
- Department of Bioorganic ChemistryCentre of Molecular and Macromolecular StudiesPolish Academy of SciencesSienkiewicza 11290–363ŁódźPoland
- Department of ChemistryOakland University146 Library DriveRochesterMI48309-4479USA
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