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Nucleophilic Reactions Using Alkali Metal Fluorides Activated by Crown Ethers and Derivatives. Catalysts 2023. [DOI: 10.3390/catal13030479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023] Open
Abstract
We review crown ether-facilitated nucleophilic reactions using metal salts, presenting the studies using kinetic measurements and quantum chemical methods. We focus on the mechanistic features, specifically on the contact ion-pair (CIP) mechanism of metal salts for nucleophilic processes promoted by crown ethers and derivatives. Experimental verification of the CIP form of the metal salt CsF complexed with [18-Crown-6] by H-NMR spectroscopy is described. The use of chiral crown ethers and derivatives for enantioselective nucleophilic processes is also discussed.
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2
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Tasi DA, Michaelsen T, Wester R, Czakó G. Quasi-classical trajectory study of the OH - + CH 3I reaction: theory meets experiment. Phys Chem Chem Phys 2023; 25:4005-4014. [PMID: 36649119 DOI: 10.1039/d2cp05553h] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Regarding OH- + CH3I, several studies have focused on the dynamics of the reaction. Here, high-level quasi-classical trajectory simulations are carried out at four different collision energies on our recently developed potential energy surface. In all, more than half a million trajectories are performed, and for the first time, the detailed quasi-classical trajectory results are compared with the reanalysed crossed-beam ion imaging experiments. Concerning the previously reported direct dynamics study of OH- + CH3I, a better agreement can be obtained between the revised experiment and our novel theoretical results. Furthermore, in the present work, the benchmark geometries, frequencies and relative energies of the stationary points are also determined for the OH- + CH3I proton-abstraction channel along with the earlier characterized SN2 channel.
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Affiliation(s)
- Domonkos A Tasi
- Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
| | - Tim Michaelsen
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - Roland Wester
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25/3, 6020 Innsbruck, Austria
| | - Gábor Czakó
- Interdisciplinary Excellence Centre and Department of Physical Chemistry and Materials Science, Institute of Chemistry, University of Szeged, Rerrich Béla tér 1, Szeged H-6720, Hungary.
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3
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de Cózar A. Diastereoselectivity on Intramolecular Alder-ene Reaction of 1,6-Dienes. Chemphyschem 2022; 23:e202200377. [PMID: 35942565 PMCID: PMC10087545 DOI: 10.1002/cphc.202200377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Revised: 08/07/2022] [Indexed: 01/04/2023]
Abstract
A detailed computational study of the intramolecular Alder-ene reaction of different 1,6-dienes at M06-2X(PCM)/TZ2P level of theory has been performed. We want to understand the influence of enophile-geminal substitution pattern in the cis : trans selectivity of the cyclization process. Our analysis of the reaction coordinate by means of activation strain model of chemical reactivity (ASM-distortion interaction model) reveals that the cis-selectivity observed for unactivated reagents is related with high stabilizing orbital interaction and lower strain energy, consequence of an early transition structure. On the other hand, the presence of activating groups increases the asynchronicity of the transition structures and reduces the activation barrier due to more stabilizing orbital and electrostatic interactions, favoring trans-selectivity.
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Affiliation(s)
- Abel de Cózar
- Departamento de Química Orgánica I, Facultad de Química, Universidad del País Vasco and Donostia International Physics Center (DIPC) P. K. 1072, 20018, San Sebastián-Donostia, Spain.,IKERBASQUE, Basque Foundation for Science, Plaza Euskadi 5, 48009, Bilbao, Spain
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4
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Oh Y, Yun W, Lee S, Kim DW. Kinetics and Quantum Chemical Analysis of Intramolecular S
N
2 Reactions by Using Metal Salts and Promoted by Crown Ethers: Contact Ion Pair vs. Separated Nucleophile Mechanism. ChemistrySelect 2022. [DOI: 10.1002/slct.202104431] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Young‐Ho Oh
- Department of Applied Chemistry Kyung Hee University 1732, Deogyeong-daero, Giheung-gu Yongin-si Gyeonggi-do 17104, Republic of Korea
| | - Wonhyuk Yun
- Department of Chemistry and Chemical Engineering Inha University 100 Inha-ro, Nam-gu Incheon 402-751, Republic of Korea
| | - Sungyul Lee
- Department of Applied Chemistry Kyung Hee University 1732, Deogyeong-daero, Giheung-gu Yongin-si Gyeonggi-do 17104, Republic of Korea
| | - Dong Wook Kim
- Department of Chemistry and Chemical Engineering Inha University 100 Inha-ro, Nam-gu Incheon 402-751, Republic of Korea
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Savoo N, Rhyman L, Ramasami P. Theoretical study of a derivative of chlorophosphine with aliphatic and aromatic Grignard reagents: S N2@P or the novel S N2@Cl followed by S N2@C? RSC Adv 2022; 12:9130-9138. [PMID: 35424871 PMCID: PMC8985194 DOI: 10.1039/d2ra00258b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 03/15/2022] [Indexed: 11/21/2022] Open
Abstract
The proposed SN2 reactions of a hindered organophosphorus reactant with aliphatic and aromatic nucleophiles [Ye et al., Org. Lett., 2017, 19, 5384–5387] were studied theoretically in order to explain the observed stereochemistry of the products.
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Affiliation(s)
- Nandini Savoo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit 80837, Mauritius
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit 80837, Mauritius
- Centre for Natural Product Research, Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, Johannesburg 2028, South Africa
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit 80837, Mauritius
- Centre for Natural Product Research, Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, Johannesburg 2028, South Africa
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6
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Origin of Salt Effects in S N2 Fluorination Using KF Promoted by Ionic Liquids: Quantum Chemical Analysis. Molecules 2021; 26:molecules26195738. [PMID: 34641282 PMCID: PMC8510065 DOI: 10.3390/molecules26195738] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Revised: 09/17/2021] [Accepted: 09/19/2021] [Indexed: 11/29/2022] Open
Abstract
Quantum chemical analysis is presented, motivated by Grée and co-workers’ observation of salt effects [Adv. Synth. Catal. 2006, 348, 1149–1153] for SN2 fluorination of KF in ionic liquids (ILs). We examine the relative promoting capacity of KF in [bmim]PF6 vs. [bmim]Cl by comparing the activation barriers of the reaction in the two ILs. We also elucidate the origin of the experimentally observed additional rate acceleration in IL [bmim]PF6 achieved by adding KPF6. We find that the anion PF6− in the added salt acts as an extra Lewis base binding to the counter-cation K+ to alleviate the strong Coulomb attractive force on the nucleophile F−, decreasing the Gibbs free energy of activation as compared with that in its absence, which is in good agreement with experimental observations of rate enhancement. We also predict that using 2 eq. KF together with an eq. KPF6 would further activate SN2 fluorination
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7
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Du P, Zhao J, Liu S, Yue Z. Insights into the nucleophilic substitution of pyridine at an unsaturated carbon center. RSC Adv 2021; 11:24238-24246. [PMID: 35479030 PMCID: PMC9036673 DOI: 10.1039/d1ra03019a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Accepted: 06/28/2021] [Indexed: 11/21/2022] Open
Abstract
Bimolecular nucleophilic substitution (SN2) is a fundamental reaction that has been widely studied. So far, the nucleophiles are mainly anionic species in SN2 reactions. In this study, we use density functional theory calculations to assess the mechanisms of substitution of carbonyl, imidoyl, and vinyl compounds with a neutral nucleophile, pyridine. Charge decomposition analysis is performed to explore the main components of the transition state's LUMO. For reactions of imidoyl or carbonyl compounds with pyridine or Cl−, the LUMOs of the transition states are composed of mixed orbitals originating from the nucleophile and the substrate. Considering the unique mixed nature of the orbitals, the reaction mode is termed SNm (m means mix). Moreover, the main components of the transition state's LUMO are pure σ*C–Cl MO in the reactions of H2C
Created by potrace 1.16, written by Peter Selinger 2001-2019
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CHCl with pyridine or Cl−. Computations were also performed for RYCHX substrates with different X and Y groups (X= Cl−, Br−, or F−; Y = O, N, or C). The nucleophilic substitution of carbonyl, imidoyl, and vinyl carbon centers with pyridine or halides is investigated in this paper.![]()
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Affiliation(s)
- Pan Du
- School of Life Science and Chemistry, Jiangsu Second Normal University Nanjing 210013 China
| | - Jiyang Zhao
- School of Environmental Science, Nanjing Xiaozhuang University Nanjing 211171 China
| | - Shanshan Liu
- School of Environmental Science, Nanjing Xiaozhuang University Nanjing 211171 China
| | - Zhen Yue
- School of Environmental Science, Nanjing Xiaozhuang University Nanjing 211171 China
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Inter- and Intra-Molecular Organocatalysis of S N2 Fluorination by Crown Ether: Kinetics and Quantum Chemical Analysis. Molecules 2021; 26:molecules26102947. [PMID: 34063489 PMCID: PMC8156096 DOI: 10.3390/molecules26102947] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 05/05/2021] [Accepted: 05/12/2021] [Indexed: 11/29/2022] Open
Abstract
We present the intra- and inter-molecular organocatalysis of SN2 fluorination using CsF by crown ether to estimate the efficacy of the promoter and to elucidate the reaction mechanism. The yields of intramolecular SN2 fluorination of the veratrole substrates are measured to be very small (<1% in 12 h) in the absence of crown ether promoters, whereas the SN2 fluorination of the substrate possessing a crown ether unit proceeds to near completion (~99%) in 12 h. We also studied the efficacy of intermolecular rate acceleration by an independent promoter 18-crown-6 for comparison. We find that the fluorinating yield of a veratrole substrate (leaving group = −OMs) in the presence of 18-crown-6 follows the almost identical kinetic course as that of intramolecular SN2 fluorination, indicating the mechanistic similarity of intra- and inter-molecular organocatalysis of the crown ether for SN2 fluorination. The calculated relative Gibbs free energies of activation for these reactions, in which the crown ether units act as Lewis base promoters for SN2 fluorination, are in excellent agreement with the experimentally measured yields of fluorination. The role of the metal salt CsF is briefly discussed in terms of whether it reacts as a contact ion pair or as a “free” nucleophile F−.
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9
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Choi H, Oh YH. Mechanism of promotion of SN2 fluorination by [Bmim]F in solvent-free environment: Quantum chemical analysis. Chem Phys Lett 2020. [DOI: 10.1016/j.cplett.2020.137857] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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10
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Savoo N, Laloo JZA, Rhyman L, Ramasami P, Bickelhaupt FM, Poater J. Activation Strain Analyses of Counterion and Solvent Effects on the Ion-Pair S N 2 Reaction of NH 2 - and CH 3 Cl. J Comput Chem 2019; 41:317-327. [PMID: 31713259 DOI: 10.1002/jcc.26104] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 10/21/2019] [Accepted: 10/21/2019] [Indexed: 11/09/2022]
Abstract
We have computationally studied the bimolecular nucleophilic substitution (SN 2) reactions of Mn NH2 (n-1) + CH3 Cl (M+ = Li+ , Na+ , K+ , and MgCl+ ; n = 0, 1) in the gas phase and in tetrahydrofuran solution at OLYP/6-31++G(d,p) using polarizable continuum model implicit solvation. We wish to explore and understand the effect of the metal counterion M+ and of solvation on the reaction profile and the stereochemical preference, that is, backside (SN 2-b) versus frontside attack (SN 2-f). The results were compared to the corresponding ion-pair SN 2 reactions involving F- and OH- nucleophiles. Our analyses with an extended activation strain model of chemical reactivity uncover and explain various trends in SN 2 reactivity along the nucleophiles F- , OH- , and NH 2 - , including solvent and counterion effects. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Nandini Savoo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius
| | - Jalal Z A Laloo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius.,Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, Johannesburg, 2028, South Africa
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, 80837, Mauritius.,Department of Chemical Sciences, University of Johannesburg, Doornfontein Campus, Johannesburg, 2028, South Africa
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry, Amsterdam Center for Multiscale Modeling (ACMM), Vrije Universiteit Amsterdam, NL-1081 HV, Amsterdam, The Netherlands.,Institute for Molecules and Materials, Radboud University Nijmegen, NL-6525 AJ, Nijmegen, The Netherlands
| | - Jordi Poater
- Departament de Química Inorgànica i Orgànica & IQTCUB, Universitat de Barcelona, 08028, Barcelona, Spain.,ICREA, 08010, Barcelona, Spain
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11
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Derricotte WD. Symmetry-Adapted Perturbation Theory Decomposition of the Reaction Force: Insights into Substituent Effects Involved in Hemiacetal Formation Mechanisms. J Phys Chem A 2019; 123:7881-7891. [PMID: 31429558 DOI: 10.1021/acs.jpca.9b06865] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The decomposition of the reaction force based on symmetry-adapted perturbation theory (SAPT) has been proposed. This approach was used to investigate the substituent effects along the reaction coordinate pathway for the hemiacetal formation mechanism between methanol and substituted aldehydes of the form CX3CHO (X = H, F, Cl, and Br), providing a quantitative evaluation of the reaction-driving and reaction-retarding force components. Our results highlight the importance of more favorable electrostatic and induction effects in the reactions involving halogenated aldehydes that leads to lower activation energy barriers. These substituent effects are further elucidated by applying the functional-group partition of symmetry-adapted perturbation theory (F-SAPT). The results show that the reaction is largely driven by favorable direct noncovalent interactions between the CX3 group on the aldehyde and the OH group on methanol.
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Affiliation(s)
- Wallace D Derricotte
- Department of Chemistry , Morehouse College , Atlanta , Georgia 30314 , United States
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12
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Larrañaga O, de Cózar A. Effect of an α-Methyl Substituent on the Dienophile on Diels-Alder endo: exo Selectivity. ChemistryOpen 2019; 8:49-57. [PMID: 30652065 PMCID: PMC6333242 DOI: 10.1002/open.201800237] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 11/23/2018] [Indexed: 11/29/2022] Open
Abstract
A detailed computational study of the Diels‐Alder reaction of cyclopentadiene with acrylonitrile, methylacrylate and their α‐methylated counterparts methacrylonitrile and methyl methacrylate at the M06‐2X(PCM)/TZVP level of theory has been performed. We want to understand the excellent exo‐selectivities observed experimentally due the presence of this substituent. To this end, analysis of the reaction coordinate by means of activation strain model of chemical reactivity (ASM‐distortion interaction model) including solvation effects and NBO second order perturbation energy have been carried out.
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Affiliation(s)
- Olatz Larrañaga
- Departamento de Química Orgánica I Facultad de Química Universidad del País Vasco and Donostia International Physics Center (DIPC) P. K. 1072 E-20018 San Sebastián-Donostia Spain
| | - Abel de Cózar
- Departamento de Química Orgánica I Facultad de Química Universidad del País Vasco and Donostia International Physics Center (DIPC) P. K. 1072 E-20018 San Sebastián-Donostia Spain.,IKERBASQUE Basque Foundation for Science E-48013 Bilbao Spain
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13
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Laloo JZA, Savoo N, Laloo N, Rhyman L, Ramasami P. ExcelAutomat 1.3: Fragment analysis based on the distortion/interaction-activation strain model. J Comput Chem 2018; 40:619-624. [DOI: 10.1002/jcc.25546] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Revised: 06/27/2018] [Accepted: 07/07/2018] [Indexed: 12/15/2022]
Affiliation(s)
- Jalal Z. A. Laloo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
| | - Nandini Savoo
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
| | - Nassirah Laloo
- School of Innovative Technologies and Engineering, Department of Creative Arts, Film and Media Technologies, University of Technology; Mauritius, La Tour Koenig, Pointe-aux-Sables 11129 Mauritius
| | - Lydia Rhyman
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
- Department of Applied Chemistry; University of Johannesburg, Doornfontein Campus; Johannesburg 2028 South Africa
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science; University of Mauritius; Réduit 80837 Mauritius
- Department of Applied Chemistry; University of Johannesburg, Doornfontein Campus; Johannesburg 2028 South Africa
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