• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4641779)   Today's Articles (340)   Subscriber (50468)
For: Muffato M, Crollius HR. Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time. Bioessays 2008;30:122-34. [DOI: 10.1002/bies.20707] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Number Cited by Other Article(s)
1
Yan Z, Cao Z, Liu Y, Ogilvie HA, Nakhleh L. Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes. Syst Biol 2021;71:706-720. [PMID: 34605924 PMCID: PMC9017653 DOI: 10.1093/sysbio/syab081] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 09/26/2021] [Accepted: 09/29/2021] [Indexed: 12/18/2022]  Open
2
Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution. Nat Commun 2021;12:4489. [PMID: 34301952 PMCID: PMC8302630 DOI: 10.1038/s41467-021-24573-z] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 06/25/2021] [Indexed: 02/07/2023]  Open
3
Sacerdot C, Louis A, Bon C, Berthelot C, Roest Crollius H. Chromosome evolution at the origin of the ancestral vertebrate genome. Genome Biol 2018;19:166. [PMID: 30333059 PMCID: PMC6193309 DOI: 10.1186/s13059-018-1559-1] [Citation(s) in RCA: 114] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Accepted: 10/04/2018] [Indexed: 11/30/2022]  Open
4
Nakatani Y, McLysaght A. Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes. Bioinformatics 2018;33:i369-i378. [PMID: 28881993 PMCID: PMC5870716 DOI: 10.1093/bioinformatics/btx259] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
5
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C. Comparative Methods for Reconstructing Ancient Genome Organization. Methods Mol Biol 2018;1704:343-362. [PMID: 29277873 DOI: 10.1007/978-1-4939-7463-4_13] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
6
Rajaraman A, Ma J. Reconstructing ancestral gene orders with duplications guided by synteny level genome reconstruction. BMC Bioinformatics 2016;17:414. [PMID: 28185565 PMCID: PMC5123302 DOI: 10.1186/s12859-016-1262-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
7
Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G. Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus. Genome Res 2016;26:918-32. [PMID: 27247244 PMCID: PMC4937564 DOI: 10.1101/gr.204420.116] [Citation(s) in RCA: 65] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Accepted: 04/28/2016] [Indexed: 12/22/2022]
8
The lineage-specific evolution of aquaporin gene clusters facilitated tetrapod terrestrial adaptation. PLoS One 2014;9:e113686. [PMID: 25426855 PMCID: PMC4245216 DOI: 10.1371/journal.pone.0113686] [Citation(s) in RCA: 101] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2014] [Accepted: 10/27/2014] [Indexed: 01/02/2023]  Open
9
Wendland J, Walther A. Chromosome number reduction in Eremothecium coryli by two telomere-to-telomere fusions. Genome Biol Evol 2014;6:1186-98. [PMID: 24803574 PMCID: PMC4040997 DOI: 10.1093/gbe/evu089] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/27/2014] [Indexed: 11/16/2022]  Open
10
Schranz ME, Mohammadin S, Edger PP. Ancient whole genome duplications, novelty and diversification: the WGD Radiation Lag-Time Model. CURRENT OPINION IN PLANT BIOLOGY 2012;15:147-53. [PMID: 22480429 DOI: 10.1016/j.pbi.2012.03.011] [Citation(s) in RCA: 178] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2012] [Revised: 03/12/2012] [Accepted: 03/14/2012] [Indexed: 05/18/2023]
11
Yegorov S, Good S. Using paleogenomics to study the evolution of gene families: origin and duplication history of the relaxin family hormones and their receptors. PLoS One 2012;7:e32923. [PMID: 22470432 PMCID: PMC3310001 DOI: 10.1371/journal.pone.0032923] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2011] [Accepted: 02/05/2012] [Indexed: 11/28/2022]  Open
12
Ouangraoua A, Tannier E, Chauve C. Reconstructing the architecture of the ancestral amniote genome. Bioinformatics 2011;27:2664-71. [DOI: 10.1093/bioinformatics/btr461] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
13
Zapater C, Chauvigné F, Norberg B, Finn RN, Cerdà J. Dual neofunctionalization of a rapidly evolving aquaporin-1 paralog resulted in constrained and relaxed traits controlling channel function during meiosis resumption in teleosts. Mol Biol Evol 2011;28:3151-69. [PMID: 21653921 DOI: 10.1093/molbev/msr146] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
14
Cerdà J, Finn RN. Piscine aquaporins: an overview of recent advances. ACTA ACUST UNITED AC 2010;313:623-50. [PMID: 20717996 DOI: 10.1002/jez.634] [Citation(s) in RCA: 115] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2010] [Revised: 06/15/2010] [Accepted: 06/29/2010] [Indexed: 11/08/2022]
15
Genomes as documents of evolutionary history. Trends Ecol Evol 2010;25:224-32. [DOI: 10.1016/j.tree.2009.09.007] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2009] [Revised: 09/18/2009] [Accepted: 09/21/2009] [Indexed: 02/02/2023]
16
Navratilova P, Fredman D, Lenhard B, Becker TS. Regulatory divergence of the duplicated chromosomal loci sox11a/b by subpartitioning and sequence evolution of enhancers in zebrafish. Mol Genet Genomics 2009;283:171-84. [DOI: 10.1007/s00438-009-0503-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2009] [Accepted: 12/01/2009] [Indexed: 01/05/2023]
17
Feiner N, Begemann G, Renz AJ, Meyer A, Kuraku S. The origin of bmp16, a novel Bmp2/4 relative, retained in teleost fish genomes. BMC Evol Biol 2009;9:277. [PMID: 19951429 PMCID: PMC2801517 DOI: 10.1186/1471-2148-9-277] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2009] [Accepted: 12/01/2009] [Indexed: 11/29/2022]  Open
18
Jaillon O, Aury JM, Wincker P. “Changing by doubling”, the impact of Whole Genome Duplications in the evolution of eukaryotes. C R Biol 2009;332:241-53. [DOI: 10.1016/j.crvi.2008.07.007] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2008] [Accepted: 07/21/2008] [Indexed: 12/17/2022]
19
Finn RN, Kolarevic J, Kongshaug H, Nilsen F. Evolution and differential expression of a vertebrate vitellogenin gene cluster. BMC Evol Biol 2009;9:2. [PMID: 19123940 PMCID: PMC2632621 DOI: 10.1186/1471-2148-9-2] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2008] [Accepted: 01/05/2009] [Indexed: 02/01/2023]  Open
20
Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, Depamphilis CW, Wall PK, Soltis PS. Polyploidy and angiosperm diversification. AMERICAN JOURNAL OF BOTANY 2009;96:336-48. [PMID: 21628192 DOI: 10.3732/ajb.0800079] [Citation(s) in RCA: 665] [Impact Index Per Article: 44.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
21
Chauve C, Tannier E. A methodological framework for the reconstruction of contiguous regions of ancestral genomes and its application to mammalian genomes. PLoS Comput Biol 2008;4:e1000234. [PMID: 19043541 PMCID: PMC2580819 DOI: 10.1371/journal.pcbi.1000234] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2008] [Accepted: 10/17/2008] [Indexed: 01/07/2023]  Open
22
Ruiz-Herrera A, Robinson TJ. Evolutionary plasticity and cancer breakpoints in human chromosome 3. Bioessays 2008;30:1126-37. [DOI: 10.1002/bies.20829] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
23
Markov GV, Paris M, Bertrand S, Laudet V. The evolution of the ligand/receptor couple: a long road from comparative endocrinology to comparative genomics. Mol Cell Endocrinol 2008;293:5-16. [PMID: 18634845 DOI: 10.1016/j.mce.2008.06.011] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/11/2008] [Revised: 05/14/2008] [Accepted: 06/11/2008] [Indexed: 12/16/2022]
24
Omland KE, Cook LG, Crisp MD. Tree thinking for all biology: the problem with reading phylogenies as ladders of progress. Bioessays 2008;30:854-67. [PMID: 18693264 DOI: 10.1002/bies.20794] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA