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Park MJ, Kim E, Kim MJ, Jang Y, Ryoo R, Ka KH. Cloning and Expression Analysis of Bioluminescence Genes in Omphalotus guepiniiformis Reveal Stress-Dependent Regulation of Bioluminescence. MYCOBIOLOGY 2024; 52:42-50. [PMID: 38415178 PMCID: PMC10896133 DOI: 10.1080/12298093.2024.2302661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 01/03/2024] [Indexed: 02/29/2024]
Abstract
Bioluminescence is a type of chemiluminescence that arises from a luciferase-catalyzed oxidation reaction of luciferin. Molecular biology and comparative genomics have recently elucidated the genes involved in fungal bioluminescence and the evolutionary history of their clusters. However, most studies on fungal bioluminescence have been limited to observing the changes in light intensity under various conditions. To understand the molecular basis of bioluminescent responses in Omphalotus guepiniiformis under different environmental conditions, we cloned and sequenced the genes of hispidin synthase, hispidin-3-hydroxylase, and luciferase enzymes, which are pivotal in the fungal bioluminescence pathway. Each gene showed high sequence similarity to that of other luminous fungal species. Furthermore, we investigated their transcriptional changes in response to abiotic stresses. Wound stress enhanced the bioluminescence intensity by increasing the expression of bioluminescence pathway genes, while temperature stress suppressed the bioluminescence intensity via the non-transcriptional pathway. Our data suggested that O. guepiniiformis regulates bioluminescence to respond differentially to specific environmental stresses. To our knowledge, this is the first study on fungal bioluminescence at the gene expression level. Further studies are required to address the biological and ecological meaning of different bioluminescence responses in changing environments, and O. quepiniiformis could be a potential model species.
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Affiliation(s)
- Mi-Jeong Park
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, Suwon, Republic of Korea
| | - Eunjin Kim
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, Suwon, Republic of Korea
| | - Min-Jun Kim
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, Suwon, Republic of Korea
| | - Yeongseon Jang
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, Suwon, Republic of Korea
| | - Rhim Ryoo
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, Suwon, Republic of Korea
| | - Kang-Hyeon Ka
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, Suwon, Republic of Korea
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Kim J, Park MJ, Shim D, Ryoo R. De novo genome assembly of the bioluminescent mushroom Omphalotus guepiniiformis reveals an Omphalotus-specific lineage of the luciferase gene block. Genomics 2022; 114:110514. [PMID: 36332840 DOI: 10.1016/j.ygeno.2022.110514] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 10/04/2022] [Accepted: 10/23/2022] [Indexed: 11/05/2022]
Abstract
Omphalotus guepiniiformis, a bioluminescent mushroom species, is a source of the potentially valuable anticancer chemical. To provide genome information, we de novo assembled the high-quality O. guepiniiformis genome using two Next-Generation sequencing techniques, PacBio and Illumina sequencing. Our draft O. guepiniiformis genome comprises 42.5 Mbp of sequence with only 80 contigs and an N50 sequence length of over 1 Mbp. There were 15,554 predicted coding genes, and 7693 genes were functionally annotated with Gene Ontology terms. We performed a genomic study focusing on mushroom bioluminescent pathway cluster genes by comparing 17 luminescent and 23 non-luminescent Agaricales species belonging to 23 genera. Synteny analysis of genomic regions near the luminescent pathway cluster genes inferred that the Omphalotus lineage was genus-specific. In summary, our de novo assembled O. guepiniiformis genome provides significant biological insights into this organism, including the evolution of the luciferase gene block, and forms the basis for future analyses.
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Affiliation(s)
- Jaewook Kim
- Department of Biological Sciences, Chungnam National University, 34134 Daejeon, Republic of Korea
| | - Mi-Jeong Park
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, 16631 Suwon, Republic of Korea
| | - Donghwan Shim
- Department of Biological Sciences, Chungnam National University, 34134 Daejeon, Republic of Korea.
| | - Rhim Ryoo
- Forest Microbiology Division, Department of Forest Bio-Resources, National Institute of Forest Science, 16631 Suwon, Republic of Korea.
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Bermudes D, Gerlach VL, Nealson KH. Effects of Culture Conditions on Mycelial Growth and Luminescence inPanellus Stypticus. Mycologia 2018. [DOI: 10.1080/00275514.1990.12025884] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- David Bermudes
- Center for Great Lakes Studies, University of Wisconsin-Milwaukee, 600 East Greenfield Avenue, Milwaukee, Wisconsin 53204
| | - Valerie L. Gerlach
- Marquette University, Department of Chemistry, Milwaukee, Wisconsin 53233
| | - Kenneth H. Nealson
- Center for Great Lakes Studies, University of Wisconsin-Milwaukee, 600 East Greenfield Avenue, Milwaukee, Wisconsin 53204
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O'Kane DJ, Lingle WL, Porter D, Wampler JE. Spectral Analysis of Bioluminescence of Panellus Stypticus. Mycologia 2018. [DOI: 10.1080/00275514.1990.12025935] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
| | - Wilma L. Lingle
- Department of Botany, University of Georgia, Athens, Georgia 30602
| | - David Porter
- Department of Botany, University of Georgia, Athens, Georgia 30602
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Nambiscalarane, a novel sesterterpenoid comprising a furan ring, and other secondary metabolites from bioluminescent fungus Neonothopanus nambi. MENDELEEV COMMUNICATIONS 2016. [DOI: 10.1016/j.mencom.2016.04.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Teranishi K. Identification of possible light emitters in the gills of a bioluminescent fungus Mycena chlorophos. LUMINESCENCE 2016; 31:1407-1413. [PMID: 27021064 DOI: 10.1002/bio.3129] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Revised: 02/25/2016] [Accepted: 02/26/2016] [Indexed: 11/09/2022]
Abstract
The pileus of Mycena chlorophos actively, spontaneously, and continuously emits green light. Molecular mechanisms underlying this bioluminescence remain unclear. We investigated light emitters in the pileus of M. chlorophos to determine the underlying mechanisms. High-performance liquid chromatography-fluorescence-photodiode array-mass detection analyses showed that actively luminescent gills in the pileus exclusively and abundantly possessed riboflavin, riboflavin 5'-monophosphate, and flavin adenine dinucleotide as green-fluorescent components. These components were localized in the bioluminescent region of the gills at the microscopic level. Fluorescence spectra of these green-fluorescent components and the gills were identical with the spectrum of gill bioluminescence (maximum emission wavelength, 525 nm). Thus, our results indicated that the possible light emitters in the pileus of M. chlorophos were riboflavin, riboflavin 5'-monophosphate, and/or flavin adenine dinucleotide. Copyright © 2016 John Wiley & Sons, Ltd.
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Affiliation(s)
- Katsunori Teranishi
- Graduate School of Bioresources, Mie University, 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan.
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Purtov KV, Petushkov VN, Baranov MS, Mineev KS, Rodionova NS, Kaskova ZM, Tsarkova AS, Petunin AI, Bondar VS, Rodicheva EK, Medvedeva SE, Oba Y, Oba Y, Arseniev AS, Lukyanov S, Gitelson JI, Yampolsky IV. The Chemical Basis of Fungal Bioluminescence. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201501779] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Purtov KV, Petushkov VN, Baranov MS, Mineev KS, Rodionova NS, Kaskova ZM, Tsarkova AS, Petunin AI, Bondar VS, Rodicheva EK, Medvedeva SE, Oba Y, Oba Y, Arseniev AS, Lukyanov S, Gitelson JI, Yampolsky IV. The Chemical Basis of Fungal Bioluminescence. Angew Chem Int Ed Engl 2015; 54:8124-8. [DOI: 10.1002/anie.201501779] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2015] [Indexed: 11/06/2022]
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Hayashi S, Fukushima R, Wada N. Extraction and purification of a luminiferous substance from the luminous mushroom Mycena chlorophos. Biophysics (Nagoya-shi) 2012; 8:111-4. [PMID: 27493527 PMCID: PMC4629642 DOI: 10.2142/biophysics.8.111] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2012] [Accepted: 05/18/2012] [Indexed: 12/01/2022] Open
Abstract
Bioluminescence has attracted considerable attention in the area of biophysics, primarily because the phenomenon can fundamentally be interpreted as the conversion of chemical to light energy. Although the molecular mechanisms underlying luminescence have been studied extensively in fireflies and bacteria, few studies have been undertaken in luminous fungi. This relative lack of information is likely due to the absence of a common and species-specific reaction-type in the luminous fungi examined to date. We recently succeeded in extracting, for the first time, a luminiferous substance from the fungus Mycena chlorophos. The substance was purified and characterized according to its chemical and optical properties. It is hoped that this information will facilitate the clarification of a novel molecular mechanism in fungal bioluminescence systems.
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Affiliation(s)
- Shuhei Hayashi
- Faculty of Life Sciences, Toyo University, Gunma 374-0193, Japan
| | - Ryuichi Fukushima
- Institute of Regional Vitalization Studies, Toyo University, Gunma 374-0193, Japan
| | - Naohisa Wada
- Faculty of Life Sciences, Toyo University, Gunma 374-0193, Japan; Institute of Regional Vitalization Studies, Toyo University, Gunma 374-0193, Japan
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Mori K, Kojima S, Maki S, Hirano T, Niwa H. Bioluminescence characteristics of the fruiting body of Mycena chlorophos. LUMINESCENCE 2011; 26:604-10. [DOI: 10.1002/bio.1280] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2010] [Revised: 01/08/2011] [Accepted: 01/10/2011] [Indexed: 11/09/2022]
Affiliation(s)
- Kenichi Mori
- Department of Engineering Science; Graduate School of Informatics and Engineering; University of Electrocommunications; Chofu; Tokyo; 182-8585; Japan
| | - Satoshi Kojima
- Department of Engineering Science; Graduate School of Informatics and Engineering; University of Electrocommunications; Chofu; Tokyo; 182-8585; Japan
| | - Shojiro Maki
- Department of Engineering Science; Graduate School of Informatics and Engineering; University of Electrocommunications; Chofu; Tokyo; 182-8585; Japan
| | - Takashi Hirano
- Department of Engineering Science; Graduate School of Informatics and Engineering; University of Electrocommunications; Chofu; Tokyo; 182-8585; Japan
| | - Haruki Niwa
- Department of Engineering Science; Graduate School of Informatics and Engineering; University of Electrocommunications; Chofu; Tokyo; 182-8585; Japan
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Desjardin DE, Oliveira AG, Stevani CV. Fungi bioluminescence revisited. Photochem Photobiol Sci 2008; 7:170-82. [DOI: 10.1039/b713328f] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Affiliation(s)
- Ji-Kai Liu
- Kunming Institute of Botany, the Chinese Academy of Sciences, Kunming 650204, P. R. China.
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14
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Rajarathnam S, Shashirekha MN, Bano Z. Biodegradative and biosynthetic capacities of mushrooms: present and future strategies. Crit Rev Biotechnol 1998; 18:91-236. [PMID: 9674114 DOI: 10.1080/0738-859891224220] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- S Rajarathnam
- Central Food Technological Research Institute, Mysore, India
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15
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Mizuno T. Bioactive biomolecules of mushrooms: Food function and medicinal effect of mushroom fungi. FOOD REVIEWS INTERNATIONAL 1995. [DOI: 10.1080/87559129509541017] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Shimomura O, Satoh S, Kishi Y. Structure and non-enzymatic light emission of two luciferin precursors isolated from the luminous mushroom Panellus stipticus. JOURNAL OF BIOLUMINESCENCE AND CHEMILUMINESCENCE 1993; 8:201-5. [PMID: 8372704 DOI: 10.1002/bio.1170080403] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
The chemical structure of two luciferin precursors PS-A and PS-B, isolated from the luminous mushroom Panellus stipticus, were determined as 1-O-decanoylpanal (2) and 1-O-dodecanoylpanal (3), respectively. Both PS-A and PS-B were converted into chemiluminescent luciferins by treatment with 50 mmol/l methylamine in a pH 3.5 buffer solution containing an anionic surfactant Tergitol 4 at 25-35 degrees C. The luciferins emitted chemiluminescence in a pH 7-8 buffer solution containing a cationic surfactant in the presence of O2 and O2-.
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Affiliation(s)
- O Shimomura
- Marine Biological Laboratory, Woods Hole, MA 02543
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17
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Takahashi H, Isobe M, Goto T. Chemical synthesis of lampteroflavin as light emitter in the luminous mushroom, lampteromyces japonicus. Tetrahedron 1991. [DOI: 10.1016/s0040-4020(01)86553-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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18
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Isobe M, Takahashi H, Goto T. Lampteromyces bioluminescence — 5 chemical synthesis of lampteroflavin as mushroom light emitter. Tetrahedron Lett 1990. [DOI: 10.1016/s0040-4039(00)94611-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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19
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Lampteroflavin, the first riboflavinyl alpha ribofuranoside as light emitter in the luminous mushroom, l. japonicus. Tetrahedron 1990. [DOI: 10.1016/s0040-4020(01)86700-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Isobe M, Uyakul D, Goto T, Counsilman JJ. Dyakia bioluminescence--1. Bioluminescence and fluorescence spectra of the land snail, D. striata. JOURNAL OF BIOLUMINESCENCE AND CHEMILUMINESCENCE 1988; 2:73-9. [PMID: 3213594 DOI: 10.1002/bio.1170020204] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The luminescent land snail Dyakia striata displayed a bioluminescence spectrum with a maximum wavelength of 515 nm. A green fluorescent substance extracted from the photogenic organ of an adult snail had a similar wavelength maximum but its fluorescence spectrum differed from that of flavin chromophore substances involved in light emission in some other luminescent organisms.
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Affiliation(s)
- M Isobe
- Laboratory of Organic Chemistry, School of Agriculture, Nagoya University, Japan
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22
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Isobe M, Uyakul D, Goto T. Lampteromyces bioluminescence - 2 lampteroflavin, a light emitter in the luminous mushroom, L. japonicus. Tetrahedron Lett 1988. [DOI: 10.1016/s0040-4039(00)86679-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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