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Zhou L, Yang X, Wang X, Feng L, Wang Z, Dai J, Zhang H, Xie Y. Effects of bacterial inoculation on lignocellulose degradation and microbial properties during cow dung composting. Bioengineered 2023; 14:213-228. [PMID: 37471462 PMCID: PMC10599258 DOI: 10.1080/21655979.2023.2185945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 07/17/2022] [Accepted: 07/18/2022] [Indexed: 07/22/2023] Open
Abstract
Inoculation with exogenous microbial agents is a common method to promote organic waste degradation and improve the quality of compost. However, the biotic effects of different microbial agents are often quite different. To evaluate the potential effects of a complex bacterial agent comprised of three strains (belonging to Bacillus and Geobacillus) on lignocellulose degradation and the underlying microbial mechanisms during cow dung composting, two lab-scale composting experiments, a control and a bacterial inoculation treatment, were established. The results suggest that bacterial inoculation accelerated the rate of temperature increase and extended the thermophilic phase. Compared to those in the negative control group, cellulose, hemicellulose, and lignin degradation rates in the inoculated group increased from 53.3% to 70.0%, 50.2% to 61.3%, and 46.4% to 60.0%, respectively. The microbial community structure and diversity in the compost were clearly changed by the bacterial inoculation. Moreover, stamp analysis showed that inoculation modulated the key compost microbial functional populations linked to the degradation of lignocellulose. Correlation matrix analysis indicated that the expression of bacterial lignocellulolytic enzymes is closely related to key microbial functional populations. Overall, the results confirm the importance of bacterial inoculation, and have important implications for promoting the efficiency and quality of cow dung compost.
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Affiliation(s)
- Liuyan Zhou
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Xinping Yang
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Xiaowu Wang
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Lei Feng
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Zhifang Wang
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Jinping Dai
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Huitao Zhang
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
| | - Yuqing Xie
- Institute of Microbiology Applications, Xinjiang Academy of Agricultural Sciences, Urumqi, XinjiangPR China
- Xinjiang Key Laboratory of Special Environmental Microbiology, Xinjiang Academy of Agricultural Sciences, Urumqi, Xinjiang, PR China
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Biochemical Characterization of a Lipolytic Enzyme From Aspergillus oryzae That Hydrolyzes Triacylglycerol and Sterol Esters. Appl Biochem Biotechnol 2020; 192:910-922. [PMID: 32617843 DOI: 10.1007/s12010-020-03360-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 06/22/2020] [Indexed: 10/23/2022]
Abstract
A novel lipolytic enzyme-encoding gene, lipO745, from Aspergillus oryzae RIB40 was cloned and expressed in Pichia pastoris. Purified recombinant LipO745 (rLipO745) had a molecular mass of approximately 60 kDa on sodium dodecyl sulfate-polyacrylamide gel electrophoresis. rLipO745 exhibited maximum activity at 40 °C and pH 7.0 and was stable at temperatures ≤ 40 °C. The substrate specificity of purified rLipO745 was analyzed using α-naphthyl esters as artificial substrates and various triacylglycerol and sterol esters as natural substrates. From among a panel of α-naphthyl esters (C2-C16), α-naphthyl butyrate (C4), with an activity of 269 ± 3.3 units/mg protein, was the optimal substrate for hydrolysis by the purified recombinant protein. The Km and kcat values of rLiO745 for the C4 substrate were 0.073 ± 0.0012 mM and 608 ± 108 s-1, respectively. The purified recombinant enzyme had considerable hydrolytic activity toward tributyrin, tripalmitin, and triolein, indicating lipase activity, and toward cholesteryl acetate, butyrate, palmitate, and oleate, indicating sterol esterase activity. Transesterification activities between tributyrin and cholesterol or between tributyrin and campesterol were also determined.
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Vaquero ME, Barriuso J, Martínez MJ, Prieto A. Properties, structure, and applications of microbial sterol esterases. Appl Microbiol Biotechnol 2016; 100:2047-61. [DOI: 10.1007/s00253-015-7258-x] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Revised: 12/14/2015] [Accepted: 12/17/2015] [Indexed: 11/28/2022]
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Zhang X, Li X, Xia L. Heterologous Expression of an Alkali and Thermotolerant Lipase from Talaromyces thermophilus in Trichoderma reesei. Appl Biochem Biotechnol 2015; 176:1722-35. [DOI: 10.1007/s12010-015-1673-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2015] [Accepted: 05/19/2015] [Indexed: 01/28/2023]
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Heterologous expression of a fungal sterol esterase/lipase in different hosts: Effect on solubility, glycosylation and production. J Biosci Bioeng 2015; 120:637-43. [PMID: 25939548 DOI: 10.1016/j.jbiosc.2015.04.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Revised: 03/26/2015] [Accepted: 04/07/2015] [Indexed: 11/21/2022]
Abstract
Ophiostoma piceae secretes a versatile sterol-esterase (OPE) that shows high efficiency in both hydrolysis and synthesis of triglycerides and sterol esters. This enzyme produces aggregates in aqueous solutions, but the recombinant protein, expressed in Komagataella (synonym Pichia) pastoris, showed higher catalytic efficiency because of its higher solubility. This fact owes to a modification in the N-terminal sequence of the protein expressed in Pichia pastoris, which incorporated 4-8 additional amino acids, affecting its aggregation behavior. In this study we present a newly engineered P. pastoris strain with improved protein production. We also produced the recombinant protein in the yeast Saccharomyces cerevisiae and in the prokaryotic host Escherichia coli, corroborating that the presence of these N-terminal extra amino acids affected the protein's solubility. The OPE produced in the new P. pastoris strain presented the same physicochemical properties than the old one. An inactive form of the enzyme was produced by the bacterium, but the recombinant esterase from both yeasts was active even after its enzymatic deglycosylation, suggesting that the presence of N-linked carbohydrates in the mature protein is not essential for enzyme activity. Although the yield in S. cerevisiae was lower than that obtained in P. pastoris, this work demonstrates the importance of the choice of the heterologous host for successful production of soluble and active recombinant protein. In addition, S. cerevisiae constitutes a good engineering platform for improving the properties of this biocatalyst.
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Barba Cedillo V, Prieto A, Martínez MJ. Potential of Ophiostoma piceae sterol esterase for biotechnologically relevant hydrolysis reactions. Bioengineered 2013; 4:249-53. [PMID: 23138020 PMCID: PMC3728196 DOI: 10.4161/bioe.22818] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2012] [Revised: 11/06/2012] [Accepted: 11/07/2012] [Indexed: 01/14/2023] Open
Abstract
The ascomycete Ophiostoma piceae produces a sterol esterase (OPE) with high affinity toward p-nitrophenol, glycerol, and sterol esters. Recently, this enzyme has been heterologously expressed in the methylotrophic yeast Pichia pastoris under the AOX1 methanol-inducible promoter (PAOX1) using sorbitol as co-susbtrate, and the hydrolytic activity of the recombinant protein (OPE*) turned out to be improved from a kinetic point of view. In this study, we analyze the effects of sorbitol during the expression of OPE*, at first added as an additional carbon source, and methanol as inducer. The O. piceae enzyme was successfully used for PVAc hydrolysis, suggesting its potential applicability in recycled paper production to decrease stickies problems.
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Affiliation(s)
- Víctor Barba Cedillo
- Centro de Investigaciones Biológicas (CIB); Spanish National Research Council (CSIC); Madrid, Spain
| | - Alicia Prieto
- Centro de Investigaciones Biológicas (CIB); Spanish National Research Council (CSIC); Madrid, Spain
| | - María Jesús Martínez
- Centro de Investigaciones Biológicas (CIB); Spanish National Research Council (CSIC); Madrid, Spain
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Barba Cedillo V, Plou FJ, Martínez MJ. Recombinant sterol esterase from Ophiostoma piceae: an improved biocatalyst expressed in Pichia pastoris. Microb Cell Fact 2012; 11:73. [PMID: 22676486 PMCID: PMC3514274 DOI: 10.1186/1475-2859-11-73] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2011] [Accepted: 03/02/2012] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND The ascomycete Ophiostoma piceae produces a sterol esterase (OPE) with high affinity towards p-nitrophenol, glycerol and sterol esters. Its hydrolytic activity on natural mixtures of triglycerides and sterol esters has been proposed for pitch biocontrol in paper industry since these compounds produce important economic losses during paper pulp manufacture. RESULTS Recently, this enzyme has been heterologously expressed in the methylotrophic yeast Pichia pastoris, and the hydrolytic activity of the recombinant protein (OPE*) studied. After the initial screening of different clones expressing the enzyme, only one was selected for showing the highest production rate. Different culture conditions were tested to improve the expression of the recombinant enzyme. Complex media were better than minimal media for production, but in any case the levels of enzymatic activity were higher (7-fold in the best case) than those obtained from O. piceae. The purified enzyme had a molecular mass of 76 kDa, higher than that reported for the native enzyme under SDS-PAGE (60 kDa). Steady-state kinetic characterization of the recombinant protein showed improved catalytic efficiency for this enzyme as compared to the native one, for all the assayed substrates (p-nitrophenol, glycerol, and cholesterol esters). Different causes for this were studied, as the increased glycosylation degree of the recombinant enzyme, their secondary structures or the oxidation of methionine residues. However, none of these could explain the improvements found in the recombinant protein. N-terminal sequencing of OPE* showed that two populations of this enzyme were expressed, having either 6 or 8 amino acid residues more than the native one. This fact affected the aggregation behaviour of the recombinant protein, as was corroborated by analytical ultracentrifugation, thus improving the catalytic efficiency of this enzyme. CONCLUSION P. pastoris resulted to be an optimum biofactory for the heterologous production of recombinant sterol esterase from O. piceae, yielding higher activity levels than those obtained with the saprophytic fungus. The enzyme showed improved kinetic parameters because of its modified N-terminus, which allowed changes in its aggregation behaviour, suggesting that its hydrophobicity has been modified.
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Affiliation(s)
- Víctor Barba Cedillo
- Centro de Investigaciones Biológicas (CIB), Spanish National Research Council (CSIC), Ramiro de Maeztu 9, Madrid 28040, Spain
| | - Francisco J Plou
- Instituto de Catálisis y Petroleoquímica, Spanish National Research Council (CSIC), Marie Curie 2, Madrid 28049, Spain
| | - María Jesús Martínez
- Centro de Investigaciones Biológicas (CIB), Spanish National Research Council (CSIC), Ramiro de Maeztu 9, Madrid 28040, Spain
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Kontkanen H, Saloheimo M, Pere J, Miettinen-Oinonen A, Reinikainen T. Characterization of Melanocarpus albomyces steryl esterase produced in Trichoderma reesei and modification of fibre products with the enzyme. Appl Microbiol Biotechnol 2006; 72:696-704. [PMID: 16470365 DOI: 10.1007/s00253-006-0321-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2005] [Revised: 12/22/2005] [Accepted: 12/27/2005] [Indexed: 10/25/2022]
Abstract
Melanocarpus albomyces steryl esterase STE1 is considered to be an interesting tool for several industrial applications due to its broad substrate specificity. STE1 was produced in the filamentous fungus Trichoderma reesei in a laboratory bioreactor at an estimated production level of 280 mg l(-l). The properties of the purified recombinant enzyme (rSTE1), such as substrate specificity, molecular mass, pH optimum and stability and thermostability, were characterized and compared to the corresponding properties of the native enzyme. Sodium dodecyl sulphate-polyacrylamide gel electrophoresis showed one band with a molecular weight of 60 kDa for rSTE1, whereas analytical gel filtration showed a dimeric structure with a molecular weight of 120 kDa. The rSTE1 was somewhat less stable under different conditions and had slightly lower activities on various substrates than the native STE1. The effects of rSTE1 on the properties of paper sheets and polyethylene terephthalate (PET) fabric were preliminarily evaluated. Due to the hydrolysis of triglycerides and steryl esters by the rSTE1 treatment, the tensile strength and hydrophilicity of the paper were increased. The rSTE1 treatment increased significantly the polarity of PET by hydrolysing the ester bonds in the polyester backbone. Dyeing of PET with methylene blue was also slightly improved after rSTE1 treatment.
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