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Wu F, Wang Z, Li X, Wang X. Amide herbicides: Analysis of their environmental fate, combined plant-microorganism soil remediation scheme, and risk prevention and control strategies for sensitive populations. JOURNAL OF HAZARDOUS MATERIALS 2023; 460:132452. [PMID: 37683346 DOI: 10.1016/j.jhazmat.2023.132452] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Revised: 08/21/2023] [Accepted: 08/30/2023] [Indexed: 09/10/2023]
Abstract
In this study, we predicted the environmental fate of amide herbicides (AHs) using the EQC (EQuilibrium Criterion) model. We found that the soil phase is the main reservoir of AHs in the environment. Second, a toxicokinetic prediction indicated that butachlor have a low human health risk, while the alachlor, acetochlor, metolachlor, napropamide, and propanil are all uncertain. To address the environmental and human-health-related threats posed by AHs, 27 new proteins/enzymes that easily absorb, degrade, and mineralize AHs were designed. Compared with the target protein/enzyme, the comprehensive evaluation value of the new proteins/enzymes increased significantly: the absorption protein increased by 20.29-113.49%; the degradation enzyme increased by 151.26-425.22%; and the mineralization enzyme increased by 23.70-52.16%. Further experiments revealed that the remediating effect of 13 new proteins/enzymes could be significantly enhanced to facilitate their applicability under real environmental conditions. The hydrophobic interactions, van der Waals forces, and polar solvation are the key factors influencing plant-microorganism remediation. Finally, the simulations revealed that appropriate consumption of kiwifruit or simultaneous consumption of ginseng, carrot, and spinach, and avoiding the simultaneous consumption of maize and carrot/spinach are the most effective means reduce the risk of exhibiting AH-linked toxicity.
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Affiliation(s)
- Fuxing Wu
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Zini Wang
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Xinao Li
- Moe Key Laboratory of Resources and Environmental System Optimization, North China Electric Power University, Beijing 102206, China.
| | - Xiaoli Wang
- College of Plant Science, Jilin University, Changchun 130062, China.
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Enhanced plant-microbe remediation of PCBs in soil using enzyme modification technique combined with molecular docking and molecular dynamics. Biochem J 2021; 478:1921-1941. [PMID: 33900386 DOI: 10.1042/bcj20210104] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 04/21/2021] [Accepted: 04/26/2021] [Indexed: 11/17/2022]
Abstract
The study on the enhanced mechanisms of the enzymes involved in plant absorption, plant degradation, and microbial mineralization in the remediation of soils contaminated with polychlorinated biphenyls (PCBs) is of great significance for the application of plant-microbe combined remediation technique in PCB-contaminated soils. The present study first used a combination of molecular docking and molecular dynamics methods to calculate the effects of the plant absorption enzyme, plant degradation enzyme, and microbial mineralization enzyme on the PCBs in the soil environment. A multifunctional plant degradation enzyme was constructed with three functional roles of absorption, degradation, and mineralization using amino acid sequence recombination and site-directed mutagenesis to modify the template of plant degradation enzyme. Finally, using the Taguchi experimental design-assisted molecular dynamics simulation method, the suitable external environmental conditions of plant-microbe combined remediation of the PCB-contaminated soil were determined. In total, six multifunctional plant degradation enzymes were designed, which exhibited a significantly improved efficiency of PCB degradation. In comparison to the complex of plant absorption enzyme, plant degradation enzyme, and microorganism mineralization enzyme (6QIM-3GZX-1B85), the six multifunctional plant degradation enzymes exhibited significantly higher efficiency (2.10-2.38 times) in degrading the PCBs, with a maximum of 2.69 times under suitable external environmental conditions.
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Sharma JK, Gautam RK, Nanekar SV, Weber R, Singh BK, Singh SK, Juwarkar AA. Advances and perspective in bioremediation of polychlorinated biphenyl-contaminated soils. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:16355-16375. [PMID: 28488147 PMCID: PMC6360087 DOI: 10.1007/s11356-017-8995-4] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Accepted: 04/04/2017] [Indexed: 05/28/2023]
Abstract
In recent years, microbial degradation and bioremediation approaches of polychlorinated biphenyls (PCBs) have been studied extensively considering their toxicity, carcinogenicity and persistency potential in the environment. In this direction, different catabolic enzymes have been identified and reported for biodegradation of different PCB congeners along with optimization of biological processes. A genome analysis of PCB-degrading bacteria has led in an improved understanding of their metabolic potential and adaptation to stressful conditions. However, many stones in this area are left unturned. For example, the role and diversity of uncultivable microbes in PCB degradation are still not fully understood. Improved knowledge and understanding on this front will open up new avenues for improved bioremediation technologies which will bring economic, environmental and societal benefits. This article highlights on recent advances in bioremediation of PCBs in soil. It is demonstrated that bioremediation is the most effective and innovative technology which includes biostimulation, bioaugmentation, phytoremediation and rhizoremediation and acts as a model solution for pollution abatement. More recently, transgenic plants and genetically modified microorganisms have proved to be revolutionary in the bioremediation of PCBs. Additionally, other important aspects such as pretreatment using chemical/physical agents for enhanced biodegradation are also addressed. Efforts have been made to identify challenges, research gaps and necessary approaches which in future, can be harnessed for successful use of bioremediation under field conditions. Emphases have been given on the quality/efficiency of bioremediation technology and its related cost which determines its ultimate acceptability.
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Affiliation(s)
- Jitendra K Sharma
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Ravindra K Gautam
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
- Environmental Chemistry Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Sneha V Nanekar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Roland Weber
- POPs Environmental Consulting, Göppingen, Germany
| | - Brajesh K Singh
- Hawkesbury Institute for the Environment, University of Western Sidney, Sidney, Australia
| | - Sanjeev K Singh
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Asha A Juwarkar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India.
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Wei X, Lyu S, Yu Y, Wang Z, Liu H, Pan D, Chen J. Phylloremediation of Air Pollutants: Exploiting the Potential of Plant Leaves and Leaf-Associated Microbes. FRONTIERS IN PLANT SCIENCE 2017; 8:1318. [PMID: 28804491 PMCID: PMC5532450 DOI: 10.3389/fpls.2017.01318] [Citation(s) in RCA: 58] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 07/12/2017] [Indexed: 05/22/2023]
Abstract
Air pollution is air contaminated by anthropogenic or naturally occurring substances in high concentrations for a prolonged time, resulting in adverse effects on human comfort and health as well as on ecosystems. Major air pollutants include particulate matters (PMs), ground-level ozone (O3), sulfur dioxide (SO2), nitrogen dioxides (NO2), and volatile organic compounds (VOCs). During the last three decades, air has become increasingly polluted in countries like China and India due to rapid economic growth accompanied by increased energy consumption. Various policies, regulations, and technologies have been brought together for remediation of air pollution, but the air still remains polluted. In this review, we direct attention to bioremediation of air pollutants by exploiting the potentials of plant leaves and leaf-associated microbes. The aerial surfaces of plants, particularly leaves, are estimated to sum up to 4 × 108 km2 on the earth and are also home for up to 1026 bacterial cells. Plant leaves are able to adsorb or absorb air pollutants, and habituated microbes on leaf surface and in leaves (endophytes) are reported to be able to biodegrade or transform pollutants into less or nontoxic molecules, but their potentials for air remediation has been largely unexplored. With advances in omics technologies, molecular mechanisms underlying plant leaves and leaf associated microbes in reduction of air pollutants will be deeply examined, which will provide theoretical bases for developing leaf-based remediation technologies or phylloremediation for mitigating pollutants in the air.
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Affiliation(s)
- Xiangying Wei
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
- Department of Environmental Horticulture and Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of FloridaApopka, FL, United States
| | - Shiheng Lyu
- Department of Environmental Horticulture and Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of FloridaApopka, FL, United States
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Ying Yu
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Zonghua Wang
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Hong Liu
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
- College of Resource and Environmental Science, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Dongming Pan
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Jianjun Chen
- Fujian Univeristy Key Laboratory of Plant-Microbe Interaction, College of Life Science, Fujian Agriculture and Forestry UniversityFuzhou, China
- Department of Environmental Horticulture and Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of FloridaApopka, FL, United States
- College of Horticulture, Fujian Agriculture and Forestry UniversityFuzhou, China
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Kuppusamy S, Palanisami T, Megharaj M, Venkateswarlu K, Naidu R. In-Situ Remediation Approaches for the Management of Contaminated Sites: A Comprehensive Overview. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2016; 236:1-115. [PMID: 26423073 DOI: 10.1007/978-3-319-20013-2_1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Though several in-situ treatment methods exist to remediate polluted sites, selecting an appropriate site-specific remediation technology is challenging and is critical for successful clean up of polluted sites. Hence, a comprehensive overview of all the available remediation technologies to date is necessary to choose the right technology for an anticipated pollutant. This review has critically evaluated the (i) technological profile of existing in-situ remediation approaches for priority and emerging pollutants, (ii) recent innovative technologies for on-site pollutant remediation, and (iii) current challenges as well as future prospects for developing innovative approaches to enhance the efficacy of remediation at contaminated sites.
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Affiliation(s)
- Saranya Kuppusamy
- CERAR-Centre for Environmental Risk Assessment and Remediation, University of South Australia, Mawson Lakes, SA, 5095, Australia
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia
| | - Thavamani Palanisami
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia
- GIER- Global Institute for Environmental Research, Faculty of Science and Information Technology, The University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Mallavarapu Megharaj
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia.
- GIER- Global Institute for Environmental Research, Faculty of Science and Information Technology, The University of Newcastle, Callaghan, NSW, 2308, Australia.
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapur, 515055, India
| | - Ravi Naidu
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia
- GIER- Global Institute for Environmental Research, Faculty of Science and Information Technology, The University of Newcastle, Callaghan, NSW, 2308, Australia
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Rylott EL, Johnston EJ, Bruce NC. Harnessing microbial gene pools to remediate persistent organic pollutants using genetically modified plants--a viable technology? JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:6519-33. [PMID: 26283045 DOI: 10.1093/jxb/erv384] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
It has been 14 years since the international community came together to legislate the Stockholm Convention on Persistent Organic Pollutants (POPs), restricting the production and use of specific chemicals that were found to be environmentally stable, often bioaccumulating, with long-term toxic effects. Efforts are continuing to remove these pollutants from the environment. While incineration and chemical treatment can be successful, these methods require the removal of tonnes of soil, at high cost, and are damaging to soil structure and microbial communities. The engineering of plants for in situ POP remediation has had highly promising results, and could be a more environmentally-friendly alternative. This review discusses the characterization of POP-degrading bacterial pathways, and how the genes responsible have been harnessed using genetic modification (GM) to introduce these same abilities into plants. Recent advances in multi-gene cloning, genome editing technologies and expression in monocot species are accelerating progress with remediation-applicable species. Examples include plants developed to degrade 2,4,6-trinitrotoluene (TNT), hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), trichloroethylene (TCE), and polychlorinated biphenyls (PCBs). However, the costs and timescales needed to gain regulatory approval, along with continued public opposition, are considerable. The benefits and challenges in this rapidly developing and promising field are discussed.
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Affiliation(s)
- Elizabeth L Rylott
- Centre for Novel Agricultural Products, Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Emily J Johnston
- Centre for Novel Agricultural Products, Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Neil C Bruce
- Centre for Novel Agricultural Products, Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
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Peng RH, Fu XY, Zhao W, Tian YS, Zhu B, Han HJ, Xu J, Yao QH. Phytoremediation of phenanthrene by transgenic plants transformed with a naphthalene dioxygenase system from Pseudomonas. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:12824-12832. [PMID: 25299803 DOI: 10.1021/es5015357] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Genes from microbes for degrading polycyclic aromatic hydrocarbons (PAHs) are seldom used to improve the ability of plants to remediate the pollution because the initiation of the microbial degradation of PAHs is catalyzed by a multienzyme system. In this study, for the first time, we have successfully transferred the complex naphthalene dioxygenase system of Pseudomonas into Arabidopsis and rice, the model dicot and monocot plant. As in bacteria, all four genes of the naphthalene dioxygenase system can be simultaneously expressed and assembled to an active enzyme in transgenic plants. The naphthalene dioxygenase system can develop the capacity of plants to tolerate a high concentration of phenanthrene and metabolize phenanthrene in vivo. As a result, transgenic plants showed improved uptake of phenanthrene from the environment over wild-type plants. In addition, phenanthrene concentrations in shoots and roots of transgenic plants were generally lower than that of wild type plants. Transgenic plants with a naphthalene dioxygenase system bring the promise of an efficient and environmental-friendly technology for cleaning up PAHs contaminated soil and water.
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Affiliation(s)
- Ri-He Peng
- Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences , 2901 Beidi Rd, Shanghai, 201106, People's Republic of China
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Peng R, Fu X, Tian Y, Zhao W, Zhu B, Xu J, Wang B, Wang L, Yao Q. Metabolic engineering of Arabidopsis for remediation of different polycyclic aromatic hydrocarbons using a hybrid bacterial dioxygenase complex. Metab Eng 2014; 26:100-110. [PMID: 25305469 DOI: 10.1016/j.ymben.2014.09.005] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Revised: 09/02/2014] [Accepted: 09/18/2014] [Indexed: 12/24/2022]
Abstract
The widespread presence of polycyclic aromatic hydrocarbons (PAHs) and their potential harm to various organisms has generated interest in efficiently eliminating these compounds from the environment. Phytoremediation is an efficient technology for cleaning up pollutants. However, unlike microorganisms, plants lack the catabolic pathway for complete degradation of these dangerous groups of compounds. One way to enhance the potential of plants for remediation of these compounds is by transferring genes involved in xenobiotic degradation from microbes to plants. In this paper, four genes, namely nidA and nidB (encoding the large and small subunits of naphthalene dioxygenase of Mycobacterium vanbaalenii PYR-1) as well as NahAa and NahAb (encoding flavoprotein reductase and ferredoxin of the electron-transport chain of the Pseudomonas putida G7 naphthalene dioxygenase system), were transferred and ectopically expressed in Arabidopsis thaliana. Transgenic Arabidopsis plants overexpressing the heterozygous naphthalene dioxygenase system exhibited enhanced tolerance toward 2-4 rings PAHs. Transgenic plants assimilated PAHs from the culture media faster and accumulated less in vivo than wild-type plants. Furthermore, examination of metabolic intermediates by gas chromatography-mass spectrometry revealed that the naphthalene metabolic pathway in transgenic plants mainly involves the dioxygenase pathway. Taken together, our findings suggest that grafting the naphthalene dioxygenase complex into plants is a possible strategy to breed PAH-tolerant plants to efficiently degrade PAHs in the environment.
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Affiliation(s)
- Rihe Peng
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Xiaoyan Fu
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Yongsheng Tian
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Wei Zhao
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Bo Zhu
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Jing Xu
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Bo Wang
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Lijuan Wang
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China
| | - Quanhong Yao
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research institute, Shanghai Academy of Agricultural Sciences, National Center for Plant Gene Research, Shanghai, PR China.
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Azad MAK, Amin L, Sidik NM. Genetically engineered organisms for bioremediation of pollutants in contaminated sites. ACTA ACUST UNITED AC 2014. [DOI: 10.1007/s11434-013-0058-8] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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10
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Viktorovtá J, Novakova M, Trbolova L, Vrchotova B, Lovecka P, Mackova M, Macek T. Characterization of transgenic tobacco plants containing bacterial bphC gene and study of their phytoremediation ability. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2014; 16:937-46. [PMID: 24933894 DOI: 10.1080/15226514.2013.810575] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Genetically modified plants can serve as an efficient tool for remediation of diverse dangerous pollutants of the environment such as pesticides, heavy metals, explosives and persistent organic compounds. Transgenic lines of Nicotiana tabacum containing bacterial bphC gene from the degradation pathway of polychlorinated biphenyls (PCBs) were tested. The product of the bphC gene - enzyme 2,3-dihydroxybiphenyl-1,2-dioxygenase is responsible for cleaving of the biphenyl ring. The presence of bphC gene in transgenic plants was detected on DNA, RNA and protein level. The expression of the bphC/His gene was verified afterpurification of the enzyme from plants by affinity chromatography followed by a Western blot and immunochemical assay. The enzyme activity of isolated protein was detected. Efficient transformation of 2,3-DHB by transgenic plants was achieved and the lines also exhibited high production of biomass. The transgenic plants were more tolerant to the commercial PCBs mixture Delor 103 than non-transgenic tobacco. And finally, the higher decrease of total PCB content and especially congener 28 in real contaminated soil from a dumpsite was determined after cultivation of transgenic plant in comparison with nontransgenic tobacco. The substrate specificity of transgenic plants was the same as substrate specificity of BphC enzyme.
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Sylvestre M. Prospects for using combined engineered bacterial enzymes and plant systems to rhizoremediate polychlorinated biphenyls. Environ Microbiol 2012; 15:907-15. [PMID: 23106850 DOI: 10.1111/1462-2920.12007] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2012] [Revised: 09/06/2012] [Accepted: 09/26/2012] [Indexed: 01/17/2023]
Abstract
The fate of polychlorinated biphenyls (PCBs) in soil is driven by a combination of interacting biological processes. Several investigations have brought evidence that the rhizosphere provides a remarkable ecological niche to enhance the PCB degradation process by rhizobacteria. The bacterial oxidative enzymes involved in PCB degradation have been investigated extensively and novel engineered enzymes exhibiting enhanced catalytic activities toward more persistent PCBs have been described. Furthermore, recent studies suggest that approaches involving processes based on plant-microbe associations are very promising to remediate PCB-contaminated sites. In this review emphasis will be placed on the current state of knowledge regarding the strategies that are proposed to engineer the enzymes of the PCB-degrading bacterial oxidative pathway and to design PCB-degrading plant-microbe systems to remediate PCB-contaminated soil.
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Affiliation(s)
- Michel Sylvestre
- Institut National de la Recherche Scientifique, INRS-Instittut Armand-Frappier, Laval, Quebec, Canada, H7V1B7.
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12
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Abstract
As one of the persistent organic pollutants, polychlorinated biphenyls are harmful to the environment and humans. Biodegradation is the most potential way to remove PCBs. Biodegradation can mainly be divided into microbial degradation, phytoremediation, plant and microbial combined remediation. Here, we introduced isolation of the PCBs-degrading strains, cloning and modification of the related degradation genes. Additionally, on the other hand, the natural remediation of plant, plant and microbial combined remediation, plant transgenic remediation were described.
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13
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Using Plants to Remove Foreign Compounds from Contaminated Water and Soil. PLANT ECOPHYSIOLOGY 2011. [DOI: 10.1007/978-90-481-9852-8_8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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14
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Kumar P, Gómez-Gil L, Mohammadi M, Sylvestre M, Eltis LD, Bolin JT. Anaerobic crystallization and initial X-ray diffraction data of biphenyl 2,3-dioxygenase from Burkholderia xenovorans LB400: addition of agarose improved the quality of the crystals. Acta Crystallogr Sect F Struct Biol Cryst Commun 2010; 67:59-62. [PMID: 21206025 DOI: 10.1107/s1744309110043393] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2010] [Accepted: 10/25/2010] [Indexed: 11/10/2022]
Abstract
Biphenyl 2,3-dioxygenase (BPDO; EC 1.14.12.18) catalyzes the initial step in the degradation of biphenyl and some polychlorinated biphenyls (PCBs). BPDOLB400, the terminal dioxygenase component from Burkholderia xenovorans LB400, a proteobacterial species that degrades a broad range of PCBs, has been crystallized under anaerobic conditions by sitting-drop vapour diffusion. Initial crystals obtained using various polyethylene glycols as precipitating agents diffracted to very low resolution (∼8 Å) and the recorded reflections were diffuse and poorly shaped. The quality of the crystals was significantly improved by the addition of 0.2% agarose to the crystallization cocktail. In the presence of agarose, wild-type BPDOLB400 crystals that diffracted to 2.4 Å resolution grew in space group P1. Crystals of the BPDOP4 and BPDORR41 variants of BPDOLB400 grew in space group P2(1).
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Affiliation(s)
- Pravindra Kumar
- Department of Biological Sciences and Center for Cancer Research, Purdue University, West Lafayette, Indiana, USA.
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15
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Novakova M, Mackova M, Antosova Z, Viktorova J, Szekeres M, Demnerova K, Macek T. Cloning the bacterial bphC gene into Nicotiana tabacum to improve the efficiency of phytoremediation of polychlorinated biphenyls. Bioeng Bugs 2010; 1:419-23. [PMID: 21468210 PMCID: PMC3056093 DOI: 10.4161/bbug.1.6.12723] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2010] [Revised: 06/04/2010] [Accepted: 06/21/2010] [Indexed: 11/19/2022] Open
Abstract
The aim of this work was to construct transgenic plants with increased capabilities to degrade organic pollutants, such as polychlorinated biphenyls. The environmentally important gene of bacterial dioxygenase, the bphC gene, was chosen to clone into a plant of Nicotiana tabacum. The chosen bphC gene encodes 2,3-dihydroxybiphenyl-1,2-dioxygenase, which cleaves the aromatic ring of dihydroxybiphenyl, and we cloned it in fusion with the gene for β-glucuronidase (GUS), luciferase (LUC) or with a histidine tail. Several genetic constructs were designed and prepared and the possible expression of desired proteins in tobacco plants was studied by transient expression. We used genetic constructs successfully expressing dioxygenase's genes we used for preparation of transgenic tobacco plants by agrobacterial infection. The presence of transgenic DNA , mRNA and protein was determined in parental and the first filial generation of transgenic plants with the bphC gene. Properties of prepared transgenic plants will be further studied.
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Affiliation(s)
- Martina Novakova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry; CAS; Joint Laboratory of IOCB and ICT Prague; Prague, Czech Republic
| | - Martina Mackova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry; CAS; Joint Laboratory of IOCB and ICT Prague; Prague, Czech Republic
| | - Zuzana Antosova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
| | - Jitka Viktorova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
| | - Miklos Szekeres
- Institute of Plant Biology; Biological Research Center of the Hungarian Academy of Sciences; Szeged, Hungary
| | - Katerina Demnerova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
| | - Tomas Macek
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry; CAS; Joint Laboratory of IOCB and ICT Prague; Prague, Czech Republic
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Aken BV, Correa PA, Schnoor JL. Phytoremediation of polychlorinated biphenyls: new trends and promises. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2010; 44:2767-76. [PMID: 20384372 PMCID: PMC3025541 DOI: 10.1021/es902514d] [Citation(s) in RCA: 169] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Transgenic plants and associated bacteria constitute a new generation of genetically modified organisms for efficient and environment-friendly treatment of soil and water contaminated with polychlorinated biphenyls (PCBs). This review focuses on recent advances in phytoremediation for the treatment of PCBs, including the development of transgenic plants and associated bacteria. Phytoremediation, or the use of higher plants for rehabilitation of soil and groundwater, is a promising strategy for cost-effective treatment of sites contaminated by toxic compounds, including PCBs. Plants can help mitigate environmental pollution by PCBs through a range of mechanisms: besides uptake from soil (phytoextraction), plants are capable of enzymatic transformation of PCBs (phytotransformation); by releasing a variety of secondary metabolites, plants also enhance the microbial activity in the root zone, improving biodegradation of PCBs (rhizoremediation). However, because of their hydrophobicity and chemical stability, PCBs are only slowly taken up and degraded by plants and associated bacteria, resulting in incomplete treatment and potential release of toxic metabolites into the environment. Moreover, naturally occurring plant-associated bacteria may not possess the enzymatic machinery necessary for PCB degradation. To overcome these limitations, bacterial genes involved in the metabolism of PCBs, such as biphenyl dioxygenases, have been introduced into higher plants, following a strategy similar to the development of transgenic crops. Similarly, bacteria have been genetically modified that exhibit improved biodegradation capabilities and are able to maintain stable relationships with plants. Transgenic plants and associated bacteria bring hope for a broader and more efficient application of phytoremediation for the treatment of PCBs.
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Affiliation(s)
- Benoit Van Aken
- Department of Civil and Environmental Engineering, Temple University, Philadelphia, Pennsylvania, USA.
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Peng RH, Xiong AS, Xue Y, Fu XY, Gao F, Zhao W, Tian YS, Yao QH. A profile of ring-hydroxylating oxygenases that degrade aromatic pollutants. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2010; 206:65-94. [PMID: 20652669 DOI: 10.1007/978-1-4419-6260-7_4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Numerous aromatic compounds are pollutants to which exposure exists or is possible, and are of concern because they are mutagenic, carcinogenic, or display other toxic characteristics. Depending on the types of dioxygenation reactions of which microorganisms are capable, they utilize ring-hydroxylating oxygenases (RHOs) to initiate the degradation and detoxification of such aromatic compound pollutants. Gene families encoding for RHOs appear to be most common in bacteria. Oxygenases are important in degrading both natural and synthetic aromatic compounds and are particularly important for their role in degrading toxic pollutants; for this reason, it is useful for environmental scientists and others to understand more of their characteristics and capabilities. It is the purpose of this review to address RHOs and to describe much of their known character, starting with a review as to how RHOs are classified. A comprehensive phylogenetic analysis has revealed that all RHOs are, in some measure, related, presumably by divergent evolution from a common ancestor, and this is reflected in how they are classified. After we describe RHO classification schemes, we address the relationship between RHO structure and function. Structural differences affect substrate specificity and product formation. In the alpha subunit of the known terminal oxygenase of RHOs, there is a catalytic domain with a mononuclear iron center that serves as a substrate-binding site and a Rieske domain that retains a [2Fe-2S] cluster that acts as an entity of electron transfer for the mononuclear iron center. Oxygen activation and substrate dihydroxylation occurring at the catalytic domain are dependent on the binding of substrate at the active site and the redox state of the Rieske center. The electron transfer from NADH to the catalytic pocket of RHO and catalyzing mechanism of RHOs is depicted in our review and is based on the results of recent studies. Electron transfer involving the RHO system typically involves four steps: NADH-ferredoxin reductase receives two electrons from NADH; ferredoxin binds with NADH-ferredoxin reductase and accepts electron from it; the reduced ferredoxin dissociates from NADH-ferredoxin reductase and shuttles the electron to the Rieske domain of the terminal oxygenase; the Rieske cluster donates electrons to O2 through the mononuclear iron. On the basis of crystal structure studies, it has been proposed that the broad specificity of the RHOs results from the large size and specific topology of its hydrophobic substrate-binding pocket. Several amino acids that determine the substrate specificity and enantioselectivity of RHOs have been identified through sequence comparison and site-directed mutagenesis at the active site. Exploiting the crystal structure data and the available active site information, engineered RHO enzymes have been and can be designed to improve their capacity to degrade environmental pollutants. Such attempts to enhance degradation capabilities of RHOs have been made. Dioxygenases have been modified to improve the degradation capacities toward PCBs, PAHs, dioxins, and some other aromatic hydrocarbons. We hope that the results of this review and future research on enhancing RHOs will promote their expanded usage and effectiveness for successfully degrading environmental aromatic pollutants.
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Affiliation(s)
- Ri-He Peng
- Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, 2901 Beidi Rd, Shanghai, People's Republic of China
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Abhilash P, Jamil S, Singh N. Transgenic plants for enhanced biodegradation and phytoremediation of organic xenobiotics. Biotechnol Adv 2009; 27:474-88. [DOI: 10.1016/j.biotechadv.2009.04.002] [Citation(s) in RCA: 236] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2008] [Revised: 03/26/2009] [Accepted: 04/03/2009] [Indexed: 11/28/2022]
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Kawahigashi H. Transgenic plants for phytoremediation of herbicides. Curr Opin Biotechnol 2009; 20:225-30. [PMID: 19269160 DOI: 10.1016/j.copbio.2009.01.010] [Citation(s) in RCA: 77] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2008] [Revised: 01/23/2009] [Accepted: 01/30/2009] [Indexed: 10/21/2022]
Abstract
Herbicides are economically important, but the non-point pollution that they cause may disrupt the surrounding environment. Phytoremediation of herbicides has been well studied using conventional plants. Transgenic plants produced for metabolizing herbicides and long-persisting pollutants can be used for phytoremediation of foreign chemicals in contaminated soil and water. The genes involved in the metabolism of chemical compounds can be isolated from various organisms, including bacteria, fungi, plants, and animals, and these genes are then introduced into candidate plants. Transgenic plants expressing mammalian P450s and the other enzymes showed tolerance and phytoremediation activity toward target herbicides. Transgenic plants can also enhance the absorption and detoxification of pollutants, thereby aiding the phytoremediation of contaminated environments.
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Affiliation(s)
- Hiroyuki Kawahigashi
- Plant Genome Unit, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.
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Sylvestre M, Macek T, Mackova M. Transgenic plants to improve rhizoremediation of polychlorinated biphenyls (PCBs). Curr Opin Biotechnol 2009; 20:242-7. [PMID: 19250817 DOI: 10.1016/j.copbio.2009.01.006] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2008] [Revised: 01/22/2009] [Accepted: 01/26/2009] [Indexed: 10/21/2022]
Abstract
Recent investigations have shown that the three components of the biphenyl dioxygenase and the 2,3-dihydroxybiphenyl dioxygenase can be produced actively in transgenic plants. Both enzymes catalyze critical steps of the bacterial polychlorinated biphenyl (PCB) degrading pathway. On the basis of these observations, optimized plant-microbe bioremediation processes in which transgenic plants would initiate PCB metabolism and release the metabolites for further degradation by rhizobacteria has been proposed. Since this is still a relatively new approach for PCB remediation, its successful application will require efforts first, to engineer improved PCB-degrading enzymes; second, to co-ordinately express these enzymes' components in plants; and third, to better understand the mechanisms by which plants and rhizobacteria interact to degrade organic pollutants.
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Affiliation(s)
- Michel Sylvestre
- Institut national de la recherche scientifique, INRS-Institut Armand-Frappier, Laval, Québec, Canada.
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Novakova M, Mackova M, Chrastilova Z, Viktorova J, Szekeres M, Demnerova K, Macek T. Cloning the bacterial bphC gene into Nicotiana tabacum to improve the efficiency of PCB phytoremediation. Biotechnol Bioeng 2009; 102:29-37. [PMID: 18683252 DOI: 10.1002/bit.22038] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The aim of this work is to increase the efficiency of the biodegradation of polychlorinated biphenyls (PCBs) by the introduction of bacterial genes into the plant genome. For this purpose, we selected the bphC gene encoding 2,3-dihydroxybiphenyl-1,2-dioxygenase from Pseudomonas testosteroni B-356 to be cloned into tobacco plants. The dihydroxybiphenyldioxygenase enzyme is the third enzyme in the biphenyl degradation pathway, and its unique function is the cleavage of biphenyl. Three different constructs were designed and prepared in E. coli: the bphC gene being fused with the beta-glucuronidase (GUS) gene, with the luciferase (LUC) gene, and with histidine tail in three separate plant cloning vectors. The GUS and LUC genes were chosen because they can be used as markers for the easy detection of transgenic plants, while histidine tail better enables the isolation of protein expressed in plant tissue. The prepared vectors were then introduced into cells of Agrobacterium tumefaciens. The transient expression of the prepared genes was first studied in cells of Nicotiana tabacum. Once this ability had been established, model tobacco plants were transformed by agrobacterial infection with the bphC/GUS, bphC/LUC, and bphC/His genes. The transformed regenerants were selected on media using a selective antibiotic, and the presence of transgenes and mRNA was determined by PCR and RT-PCR. The expression of the fused proteins BphC/GUS and BphC/LUC was confirmed histochemically by analysis of the expression of their detection markers. Western blot analysis was performed to detect the presence of the BphC/His protein immunochemically using a mouse anti-His antibody. Growth and viability of transgenic plants in the presence of PCBs was compared with control plants.
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Affiliation(s)
- M Novakova
- ICT Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Technicka 3, 16628 Prague, Czech Republic
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Hirai H, Kashima Y, Hayashi K, Sugiura T, Yamagishi K, Kawagishi H, Nishida T. Efficient expression of laccase gene from white-rot fungus Schizophyllum commune in a transgenic tobacco plant. FEMS Microbiol Lett 2008; 286:130-5. [PMID: 18625019 DOI: 10.1111/j.1574-6968.2008.01267.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
Ligninolytic enzymes produced by white-rot fungi are effective degraders of recalcitrant aromatic environmental pollutants. However, gene sequences of these enzymes are rich in CpG dinucleotides, which are particularly unfavorable to efficient expression in plants. In order to develop a phytoremediation technique with a ligninolytic enzyme-producing transgenic plant, laccase cDNA (scL) from white-rot fungus Schizophyllum commune was used as a model ligninolytic enzyme, and we attempted to obtain the efficient expression of scL in a transgenic tobacco plant by decreasing the CpG-dinucleotide motif content. We constructed a mutagenized scL sequence, scL12, decreasing the CpG-dinucleotide motif content by 12%, and scL12 was introduced into the tobacco plant. Much higher laccase activity was detected in transgenic scL12 plants than in transgenic scL plants and wild-type plants. Using reverse transcriptase-PCR analysis, scL12 was translated in transgenic scL12 plants whereas mRNA of scL was not detected in the transgenic scL plants, and scL, which is the product of the scL12 gene, was produced in the transgenic scL12 plants using native-polyacrylamide gel electrophoresis analysis. Moreover, transgenic scL12 plants were able to remove trichlorophenol more effectively than transgenic scL plants and wild-type plants. These results suggest that decreasing CpG-dinucleotide motif content in fungal target genes is a useful method for efficient expression of these genes in transgenic plants.
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Affiliation(s)
- Hirofumi Hirai
- Department of Applied Biological Chemistry, Faculty of Agriculture, Shizuoka University, Shizuoka, Japan.
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Novel roles for genetically modified plants in environmental protection. Trends Biotechnol 2008; 26:146-52. [DOI: 10.1016/j.tibtech.2007.11.009] [Citation(s) in RCA: 136] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2007] [Revised: 11/14/2007] [Accepted: 11/21/2007] [Indexed: 11/18/2022]
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Rehmann L, Daugulis AJ. Biodegradation of PCBs in two-phase partitioning bioreactors following solid extraction from soil. Biotechnol Bioeng 2008; 99:1273-80. [DOI: 10.1002/bit.21674] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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News & views. Biotechnol J 2007. [DOI: 10.1002/biot.200790076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Eapen S, Singh S, D'Souza SF. Advances in development of transgenic plants for remediation of xenobiotic pollutants. Biotechnol Adv 2007; 25:442-51. [PMID: 17553651 DOI: 10.1016/j.biotechadv.2007.05.001] [Citation(s) in RCA: 81] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2007] [Revised: 05/04/2007] [Accepted: 05/04/2007] [Indexed: 10/23/2022]
Abstract
Phytoremediation-the use of plants for cleaning up of xenobiotic compounds-has received much attention in the last few years and development of transgenic plants tailored for remediation will further enhance their potential. Although plants have the inherent ability to detoxify some xenobiotic pollutants, they generally lack the catabolic pathway for complete degradation/mineralization of these compounds compared to microorganisms. Hence, transfer of genes involved in xenobiotic degradation from microbes/other eukaryotes to plants will further enhance their potential for remediation of these dangerous groups of compounds. Transgenic plants with enhanced potential for detoxification of xenobiotics such as trichloro ethylene, pentachlorophenol, trinitro toluene, glycerol trinitrate, atrazine, ethylene dibromide, metolachlor and hexahydro-1,3,5-trinitro-1,3,5-triazine are a few successful examples of utilization of transgenic technology. As more genes involved in xenobiotic metabolism in microorganisms/eukaryotes are discovered, it will lead to development of novel transgenic plants with improved potential for degradation of recalcitrant contaminants. Selection of suitable candidate plants, field testing and risk assessment are important considerations to be taken into account while developing transgenic plants for phytoremediation of this group of pollutants. Taking advantage of the advances in biotechnology and 'omic' technologies, development of novel transgenic plants for efficient phytoremediation of xenobiotic pollutants, field testing and commercialization will soon become a reality.
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Affiliation(s)
- Susan Eapen
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai-400085, India.
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