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For: Bi X, Cheng Y, Xu X, Lv X, Liu Y, Li J, Du G, Chen J, Ledesma-Amaro R, Liu L. etiBsu1209: A comprehensive multiscale metabolic model for Bacillus subtilis. Biotechnol Bioeng 2023;120:1623-1639. [PMID: 36788025 DOI: 10.1002/bit.28355] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 12/08/2022] [Accepted: 02/13/2023] [Indexed: 02/16/2023]
Number Cited by Other Article(s)
1
Olavarria K, Sousa DZ. Thermodynamic tools for more efficient biotechnological processes: an example in poly-(3-hydroxybutyrate) production from carbon monoxide. Curr Opin Biotechnol 2024;90:103212. [PMID: 39357457 DOI: 10.1016/j.copbio.2024.103212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 08/19/2024] [Accepted: 09/14/2024] [Indexed: 10/04/2024]
2
Neal M, Brakewood W, Betenbaugh M, Zengler K. Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups. mSystems 2024;9:e0092324. [PMID: 39365060 PMCID: PMC11575223 DOI: 10.1128/msystems.00923-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Accepted: 08/20/2024] [Indexed: 10/05/2024]  Open
3
Bi X, Cheng Y, Lv X, Liu Y, Li J, Du G, Chen J, Liu L. A Multi-Omics, Machine Learning-Aware, Genome-Wide Metabolic Model of Bacillus Subtilis Refines the Gene Expression and Cell Growth Prediction. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2408705. [PMID: 39287062 PMCID: PMC11558093 DOI: 10.1002/advs.202408705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Indexed: 09/19/2024]
4
Sun X, Bi X, Li G, Cui S, Xu X, Liu Y, Li J, Du G, Lv X, Liu L. Combinatorial metabolic engineering of Bacillus subtilis for menaquinone-7 biosynthesis. Biotechnol Bioeng 2024;121:3338-3350. [PMID: 38965781 DOI: 10.1002/bit.28800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 06/07/2024] [Accepted: 06/27/2024] [Indexed: 07/06/2024]
5
Lu H, Xiao L, Liao W, Yan X, Nielsen J. Cell factory design with advanced metabolic modelling empowered by artificial intelligence. Metab Eng 2024;85:61-72. [PMID: 39038602 DOI: 10.1016/j.ymben.2024.07.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 07/06/2024] [Accepted: 07/06/2024] [Indexed: 07/24/2024]
6
Gong Z, Chen J, Jiao X, Gong H, Pan D, Liu L, Zhang Y, Tan T. Genome-scale metabolic network models for industrial microorganisms metabolic engineering: Current advances and future prospects. Biotechnol Adv 2024;72:108319. [PMID: 38280495 DOI: 10.1016/j.biotechadv.2024.108319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Revised: 01/04/2024] [Accepted: 01/18/2024] [Indexed: 01/29/2024]
7
Immanuel A, Yennamalli RM, Ulaganathan V. Targeting the Bottlenecks in Levan Biosynthesis Pathway in Bacillus subtilis and Strain Optimization by Computational Modeling and Omics Integration. OMICS : A JOURNAL OF INTEGRATIVE BIOLOGY 2024;28:49-58. [PMID: 38315781 DOI: 10.1089/omi.2023.0277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
8
Qian J, Wang Y, Hu Z, Shi T, Wang Y, Ye C, Huang H. Bacillus sp. as a microbial cell factory: Advancements and future prospects. Biotechnol Adv 2023;69:108278. [PMID: 37898328 DOI: 10.1016/j.biotechadv.2023.108278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 09/27/2023] [Accepted: 10/25/2023] [Indexed: 10/30/2023]
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