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Gallier F, E Miranda LSDM. Organocatalysis applied to carbohydrates: from roots to current developments. Org Biomol Chem 2021; 20:919-933. [PMID: 34931627 DOI: 10.1039/d1ob01919h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Organocatalysis emerged in the last decade as a powerful tool for the synthesis of complex molecules. In the field of carbohydrates, it found widespread use in the synthesis of rare and non-natural carbohydrate derivatives. Additionally, it has also found important application in the stereoselective functionalization of the anomeric carbon in glycosylation reactions. These efforts culminated in the development of different types of catalysts operating through distinct activation modes that allow the selective synthesis of α- or β-glycosides even on daunting substrates. All these advances starting from its first examples in carbohydrate synthesis to the current developments in glycosylation reactions are reviewed.
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Affiliation(s)
- Florian Gallier
- CY Cergy Paris Université, CNRS, BioCIS, 95000, Cergy-Pontoise, France. .,Université Paris-Saclay, CNRS, BioCIS, 92290, Châtenay-Malabry, France
| | - Leandro Soter de Mariz E Miranda
- CY Cergy Paris Université, CNRS, BioCIS, 95000, Cergy-Pontoise, France. .,Université Paris-Saclay, CNRS, BioCIS, 92290, Châtenay-Malabry, France.,Biocatalysis and Organic Synthesis Group, Universidade Federal do Rio de Janeiro, Av Athos da Silveira Ramos 149, Centro de Tecnologia, Bl A, 21941909 Ilha do Fundão, Rio de Janeiro, Brazil
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2
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Shimogaki M, Takeshima A, Kano T, Maruoka K. Enantioselective Synthesis of Monosaccharide Analogues by Two-Step Sequential Enamine Catalysis: Benzoyloxylation and Aldol Reaction. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000073] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Mio Shimogaki
- Department of Chemistry; Graduate School of Science; Kyoto University; Sakyo 606-8502 Kyoto Japan
| | - Aika Takeshima
- Department of Chemistry; Graduate School of Science; Kyoto University; Sakyo 606-8502 Kyoto Japan
| | - Taichi Kano
- Department of Chemistry; Graduate School of Science; Kyoto University; Sakyo 606-8502 Kyoto Japan
| | - Keiji Maruoka
- Department of Chemistry; Graduate School of Science; Kyoto University; Sakyo 606-8502 Kyoto Japan
- Graduate School of Pharmaceutical Sciences; Graduate School of Science; Kyoto University; Sakyo 606-8501 Kyoto Japan
- School of Chemical Engineering and Light Industry; Graduate School of Science; Guangdong University of Technology; 510006 Guangzhou China
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3
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An F, Maji B, Min E, Ofial AR, Mayr H. Basicities and Nucleophilicities of Pyrrolidines and Imidazolidinones Used as Organocatalysts. J Am Chem Soc 2020; 142:1526-1547. [DOI: 10.1021/jacs.9b11877] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Feng An
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München, Germany
| | - Biplab Maji
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München, Germany
| | - Elizabeth Min
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München, Germany
| | - Armin R. Ofial
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München, Germany
| | - Herbert Mayr
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München, Germany
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Guruge C, Rfaish SY, Byrd C, Yang S, Starrett AK, Guisbert E, Nesnas N. Caged Proline in Photoinitiated Organocatalysis. J Org Chem 2019; 84:5236-5244. [PMID: 30908906 DOI: 10.1021/acs.joc.9b00220] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Organocatalysis is an emerging field, in which small metal-free organic structures catalyze a diversity of reactions with a remarkable stereoselectivity. The ability to selectively switch on such pathways upon demand has proven to be a valuable tool in biological systems. Light as a trigger provides the ultimate spatial and temporal control of activation. However, there have been limited examples of phototriggered catalytic systems. Herein, we describe the synthesis and application of a caged proline system that can initiate organocatalysis upon irradiation. The caged proline was generated using the highly efficient 4-carboxy-5,7-dinitroindolinyl (CDNI) photocleavable protecting group in a four-step synthesis. Advantages of this system include water solubility, biocompatibility, high quantum yield for catalyst release, and responsiveness to two-photon excitation. We showed the light-triggered catalysis of a crossed aldol reaction, a Mannich reaction, and a self-aldol condensation reaction. We also demonstrated light-initiated catalysis, leading to the formation of a biocide in situ, which resulted in the growth inhibition of E. coli, with as little as 3 min of irradiation. This technique can be broadly applied to other systems, by which the formation of active forms of drugs can be catalytically assembled remotely via two-photon irradiation.
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Affiliation(s)
- Charitha Guruge
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
| | - Saad Y Rfaish
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
| | - Chanel Byrd
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
| | - Shukun Yang
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
| | - Anthony K Starrett
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
| | - Eric Guisbert
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
| | - Nasri Nesnas
- Department of Biomedical and Chemical Engineering and Sciences , Florida Institute of Technology , Melbourne , Florida 32901 , United States
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5
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Affiliation(s)
| | - Mikael Bols
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark
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6
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Giguère D, Martel J, Shiao TC, Roy R. Enantioselective de Novo Synthesis of 4-Deoxy-d-hexopyranoses via Hetero-Diels–Alder Cycloadditions: Total Synthesis of Ezoaminuroic Acid and Neosidomycin. J Org Chem 2011; 76:9687-98. [DOI: 10.1021/jo201673w] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Denis Giguère
- Pharmaqam, Department
of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre-Ville
Montréal, Québec, Canada H3C 3P8
| | - Julien Martel
- Pharmaqam, Department
of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre-Ville
Montréal, Québec, Canada H3C 3P8
| | - Tze Chieh Shiao
- Pharmaqam, Department
of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre-Ville
Montréal, Québec, Canada H3C 3P8
| | - René Roy
- Pharmaqam, Department
of Chemistry, Université du Québec à Montréal, P.O. Box 8888, Succ. Centre-Ville
Montréal, Québec, Canada H3C 3P8
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7
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Monrad RN, Madsen R. Modern methods for shortening and extending the carbon chain in carbohydrates at the anomeric center. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.08.047] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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8
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Simple and Facile l-Prolinamides Derived from Achiral Cycloalkylamines as Organocatalysts for the Highly Efficient Large-Scale Asymmetric Direct Aldol Reactions. Catal Letters 2011. [DOI: 10.1007/s10562-011-0585-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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Xu J, Fu X, Wu C, Hu X. Simple, inexpensive, and facile l-prolinamide used as a recyclable organocatalyst for highly efficient large-scale asymmetric direct aldol reactions. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.tetasy.2011.05.008] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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10
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Rani R, Peddinti RK. Camphor-10-sulfonamide-based prolinamide organocatalyst for the direct intermolecular aldol reaction between ketones and aromatic aldehydes. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.tetasy.2010.04.018] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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11
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Guaragna A, D’Alonzo D, Paolella C, Napolitano C, Palumbo G. Highly Stereoselective de Novo Synthesis of l-Hexoses. J Org Chem 2010; 75:3558-68. [DOI: 10.1021/jo100077k] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Annalisa Guaragna
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
| | - Daniele D’Alonzo
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
| | - Concetta Paolella
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
| | - Carmela Napolitano
- School of Chemistry, National University of Ireland, University Road, Galway, Ireland
| | - Giovanni Palumbo
- Dipartimento di Chimica Organica e Biochimica, Università di Napoli Federico II-Complesso Universitario Monte Sant'Angelo, via Cinthia, 4 I-80126 Napoli, Italy
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12
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Shimizu M, Ando H, Shibuya H, Hachiya I. Facile Synthesis and Ring-Opening of 4-(Tributylstannyl)pyrrolidine-2-carboxylates. HETEROCYCLES 2010. [DOI: 10.3987/com-09-s(s)73] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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13
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Srinivasan V, Morowitz HJ. Analysis of the intermediary metabolism of a reductive chemoautotroph. THE BIOLOGICAL BULLETIN 2009; 217:222-232. [PMID: 20040747 DOI: 10.1086/bblv217n3p222] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
All extant life forms depend, directly or indirectly, on the autotrophic fixation of the dominant elements of the biosphere: carbon, hydrogen, nitrogen, oxygen, phosphorus, and sulfur. We have earlier presented the canonical network of reactions that constitute the anabolism of a reductive chemoautotroph. Separating this network into subgraphs reveals several empirical generalizations: (1) acetate (acetyl-CoA), pyruvate, phosphoenol pyruvate, oxaloacetate, and 2-oxoglutarate serve as universal starting points for all pathways leading to the universal building blocks-20 amino acids and 4 ribonucleotide triphosphates; (2) all pathways are anabolic; (3) all reactions operate by complete utilization of outputs with no molecules left behind as waste, ensuring conservation of information; (4) the core metabolome of 120 compounds is acidic, consisting of compounds containing phosphoric or carboxylic acid or both; and (5) the core network is both brittle-vulnerable to a single break-and robust-having persisted for 4 billion years. Preliminary analysis of the chemical reactions and resultant structures reveals (a) a sparseness among possible molecular structures; (b) subdomains in the network; and (c) restriction of anabolism to a small set of rudimentary organic reactions with limited diversity in chemical mechanisms. These generalizations have implications for biogenesis and trophic ecology.
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Burck S, van Assema SG, Lastdrager B, Slootweg JC, Ehlers A, Otero J, Dacunha-Marinho B, Llamas-Saiz A, Overhand M, van Raaij M, Lammertsma K. Bisphosphine-Functionalized Cyclic Decapeptides Based on the Natural Product Gramicidin S: A Potential Scaffold for Transition-Metal Coordination. Chemistry 2009; 15:8134-45. [DOI: 10.1002/chem.200901127] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Almaşi D, Alonso D, Balaguer AN, Nájera C. WaterversusSolvent-Free Conditions for the Enantioselective Inter- and Intramolecular Aldol Reaction Employing L-Prolinamides and L-Prolinethioamides as Organocatalysts. Adv Synth Catal 2009. [DOI: 10.1002/adsc.200800814] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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16
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Almaşi D, Alonso D, Nájera C. ProlinamidesversusProlinethioamides as Recyclable Catalysts in the Enantioselective Solvent-Free Inter- and Intramolecular Aldol Reactions. Adv Synth Catal 2008. [DOI: 10.1002/adsc.200800430] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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17
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Juárez R, Padilla A, Corma A, García H. Organocatalysts for the Reaction of Dimethyl Carbonate with 2,4-Diaminotoluene. Ind Eng Chem Res 2008. [DOI: 10.1021/ie800126t] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Raquel Juárez
- Instituto de Tecnología Química CSIC-UPV, Universidad Politécnica de Valencia, Avda. de los Naranjos, 46022 Valencia, Spain, and Centro Tecnológico de Repsol YPF, Crta. De Extremadura, Km 18, 28931 Madrid, Spain
| | - Ana Padilla
- Instituto de Tecnología Química CSIC-UPV, Universidad Politécnica de Valencia, Avda. de los Naranjos, 46022 Valencia, Spain, and Centro Tecnológico de Repsol YPF, Crta. De Extremadura, Km 18, 28931 Madrid, Spain
| | - Avelino Corma
- Instituto de Tecnología Química CSIC-UPV, Universidad Politécnica de Valencia, Avda. de los Naranjos, 46022 Valencia, Spain, and Centro Tecnológico de Repsol YPF, Crta. De Extremadura, Km 18, 28931 Madrid, Spain
| | - Hermenegildo García
- Instituto de Tecnología Química CSIC-UPV, Universidad Politécnica de Valencia, Avda. de los Naranjos, 46022 Valencia, Spain, and Centro Tecnológico de Repsol YPF, Crta. De Extremadura, Km 18, 28931 Madrid, Spain
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18
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Kotsuki H, Ikishima H, Okuyama A. Organocatalytic Asymmetric Synthesis Using Proline and Related Molecules. Part 1. HETEROCYCLES 2008. [DOI: 10.3987/rev-07-620] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Direct catalytic asymmetric three-component Mannich reactions with dihydroxyacetone: enantioselective synthesis of amino sugar derivatives. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2007.11.196] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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20
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Guillena G, Nájera C, Ramón DJ. Enantioselective direct aldol reaction: the blossoming of modern organocatalysis. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.09.025] [Citation(s) in RCA: 311] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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21
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Ramasastry SSV, Albertshofer K, Utsumi N, Tanaka F, Barbas CF. Mimicking Fructose and Rhamnulose Aldolases: Organocatalyticsyn-Aldol Reactions with Unprotected Dihydroxyacetone. Angew Chem Int Ed Engl 2007; 46:5572-5. [PMID: 17577894 DOI: 10.1002/anie.200701269] [Citation(s) in RCA: 89] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- S S V Ramasastry
- The Skaggs Institute for Chemical Biology and Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA
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22
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Ramasastry S, Albertshofer K, Utsumi N, Tanaka F, Barbas C. Mimicking Fructose and Rhamnulose Aldolases: Organocatalyticsyn-Aldol Reactions with Unprotected Dihydroxyacetone. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200701269] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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23
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Marcia de Figueiredo R, Christmann M. Organocatalytic Synthesis of Drugs and Bioactive Natural Products. European J Org Chem 2007. [DOI: 10.1002/ejoc.200700032] [Citation(s) in RCA: 341] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | - Mathias Christmann
- RWTH Aachen, Institute of Organic Chemistry Landoltweg 1, 52074 Aachen, Germany, Fax: +49‐241‐8092127
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24
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Seebach D, Beck A, Badine D, Limbach M, Eschenmoser A, Treasurywala A, Hobi R, Prikoszovich W, Linder B. Are Oxazolidinones Really Unproductive, Parasitic Species in Proline Catalysis? – Thoughts and Experiments Pointing to an Alternative View. Helv Chim Acta 2007. [DOI: 10.1002/hlca.200790050] [Citation(s) in RCA: 204] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Matsubara R, Kawai N, Kobayashi S. Catalytic Enantioselective and Diastereoselective Addition of Aldehyde-Derived Enecarbamates to α-Oxo Aldehydes. Angew Chem Int Ed Engl 2006; 45:3814-6. [PMID: 16671133 DOI: 10.1002/anie.200600471] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Ryosuke Matsubara
- Graduate School of Pharmaceutical Sciences, University of Tokyo, HFRE Division, ERATO, Japan Science Technology Agency (JST), Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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Matsubara R, Kawai N, Kobayashi S. Catalytic Enantioselective and Diastereoselective Addition of Aldehyde-Derived Enecarbamates to α-Oxo Aldehydes. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200600471] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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27
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Limbach M. 5-(Pyrrolidin-2-yl)-1H-tetrazole and 5-[(Pyrrolidin-2-yl)methyl]-1H-tetrazole: Proline Surrogates with Increased Potential in Asymmetric Catalysis. Chem Biodivers 2006; 3:119-33. [PMID: 17193251 DOI: 10.1002/cbdv.200690016] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Catalytic enantioselective methodology has dramatically been enriched by the re-discovery of the simple amino acid proline as a chiral catalyst in the year 2000. Although no catalyst offers such a simple and broad access to quite complex reaction products, as does proline, its synthetic potential is not unrestricted, what is especially connected to its poor solubility in organic media. Exchange of the carboxylic moiety by a tetrazole unit leads to proline surrogates, that by far outperform proline with respect to yield, enantioselectivity, reaction time, substrate and solvent scope, catalyst loading, and stoichiometry of the compounds used in excess. These factors are discussed and critically compared with selected representative proline-catalyzed reactions.
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Affiliation(s)
- Michael Limbach
- Laboratorium für Organische Chemie, Departement Chemie und Angewandte Biowissenschaften, Eidgenössische Technische Hochschule, ETH Hönggerberg, HCI, Wolfgang-Pauli-Strasse 10, CH-8093 Zürich, Switzerland.
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