1
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Ma T, Kong W, Liu Y, Zhao H, Ouyang Y, Gao J, Zhou L, Jiang Y. Asymmetric Hydrogenation of C = C Bonds in a SpinChem Reactor by Immobilized Old Yellow Enzyme and Glucose Dehydrogenase. Appl Biochem Biotechnol 2022; 194:4999-5016. [PMID: 35687305 DOI: 10.1007/s12010-022-03991-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/27/2022] [Indexed: 11/27/2022]
Abstract
The application of immobilized enzymes in pharmaceutical and bulk chemical production has been shown to be economically viable. We demonstrate the exceptional performance of a method that immobilizes the old yellow enzyme YqjM and glucose dehydrogenase (GDH) on resin for the asymmetric hydrogenation (AH) of C = C bonds in a SpinChem reactor. When immobilized YqjM and GDH are reused 10 times, the conversion of 2-methylcyclopentenone could reach 78%. Which is because the rotor of the SpinChem reactor effectively reduces catalyst damage caused by shear force in the reaction system. When the substrate concentration is 175 mM, an 87% conversion of 2-methylcyclopentenone is obtained. The method is also observed to perform well for the AH of C = C bonds in other unsaturated carbonyl compounds with the SpinChem reactor. Thus, this method has great potential for application in the enzymatic production of chiral compounds.
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Affiliation(s)
- Teng Ma
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China.,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China
| | - Weixi Kong
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China.,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China
| | - Yunting Liu
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China.,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China
| | - Hao Zhao
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China.,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China
| | - Yaping Ouyang
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China.,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China
| | - Jing Gao
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China.,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China
| | - Liya Zhou
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China. .,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China.
| | - Yanjun Jiang
- School of Chemical Engineering and Technology, Hebei University of Technology, Tianjin, 300130, People's Republic of China. .,Tianjin Key Laboratory of Chemical Process Safety, Hebei University of Technology, Tianjin, 300130, People's Republic of China.
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2
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Spöring JD, Graf von Westarp W, Kipp CR, Jupke A, Rother D. Enzymatic Cascade in a Simultaneous, One-Pot Approach with In Situ Product Separation for the Asymmetric Production of (4 S,5 S)-Octanediol. Org Process Res Dev 2022. [DOI: 10.1021/acs.oprd.1c00433] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jan-Dirk Spöring
- Institute for Bio- and Geosciences 1 (IBG-1), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany
- Aachen Biology and Biotechnology (ABBt), RWTH Aachen University, 52074 Aachen, Germany
| | | | - Carina Ronja Kipp
- Institute for Bio- and Geosciences 1 (IBG-1), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany
| | - Andreas Jupke
- Fluid Process Engineering (AVT.FVT), RWTH Aachen University, 52074 Aachen, Germany
| | - Dörte Rother
- Institute for Bio- and Geosciences 1 (IBG-1), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany
- Aachen Biology and Biotechnology (ABBt), RWTH Aachen University, 52074 Aachen, Germany
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3
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Hilberath T, Raffaele A, Windeln LM, Urlacher VB. Evaluation of P450 monooxygenase activity in lyophilized recombinant E. coli cells compared to resting cells. AMB Express 2021; 11:162. [PMID: 34865204 PMCID: PMC8643389 DOI: 10.1186/s13568-021-01319-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 11/16/2021] [Indexed: 12/12/2022] Open
Abstract
Cytochromes P450 catalyze oxidation of chemically diverse compounds and thus offer great potential for biocatalysis. Due to the complexity of these enzymes, their dependency of nicotinamide cofactors and redox partner proteins, recombinant microbial whole cells appear most appropriate for effective P450-mediated biocatalysis. However, some drawbacks exist that require individual solutions also when P450 whole-cell catalysts are used. Herein, we compared wet resting cells and lyophilized cells of recombinant E. coli regarding P450-catalyzed oxidation and found out that lyophilized cells are well-appropriate as P450-biocatalysts. E. coli harboring CYP105D from Streptomyces platensis DSM 40041 was used as model enzyme and testosterone as model substrate. Conversion was first enhanced by optimized handling of resting cells. Co-expression of the alcohol dehydrogenase from Rhodococcus erythropolis for cofactor regeneration did not affect P450 activity of wet resting cells (46% conversion) but was crucial to obtain sufficient P450 activity with lyophilized cells reaching a conversion of 72% under the same conditions. The use of recombinant lyophilized E. coli cells for P450 mediated oxidations is a promising starting point towards broader application of these enzymes.
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4
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Cui Z, Wang Z, Zheng M, Chen T. Advances in biological production of acetoin: a comprehensive overview. Crit Rev Biotechnol 2021; 42:1135-1156. [PMID: 34806505 DOI: 10.1080/07388551.2021.1995319] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Acetoin, a high-value-added bio-based platform chemical, is widely used in foods, cosmetics, agriculture, and the chemical industry. It is an important precursor for the synthesis of: 2,3-butanediol, liquid hydrocarbon fuels and heterocyclic compounds. Since the fossil resources are becoming increasingly scarce, biological production of acetoin has received increasing attention as an alternative to chemical synthesis. Although there are excellent reviews on the: application, catabolism and fermentative production of acetoin, little attention has been paid to acetoin production via: electrode-assisted fermentation, whole-cell biocatalysis, and in vitro/cell-free biocatalysis. In this review, acetoin biosynthesis pathways and relevant key enzymes are firstly reviewed. In addition, various strategies for biological acetoin production are summarized including: cell-free biocatalysis, whole-cell biocatalysis, microbial fermentation, and electrode-assisted fermentation. The advantages and disadvantages of the different approaches are discussed and weighed, illustrating the increasing progress toward economical, green and efficient production of acetoin. Additionally, recent advances in acetoin extraction and recovery in downstream processing are also briefly reviewed. Moreover, the current issues and future prospects of diverse strategies for biological acetoin production are discussed, with the hope of realizing the promises of industrial acetoin biomanufacturing in the near future.
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Affiliation(s)
- Zhenzhen Cui
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,SynBio Research Platform, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, China
| | - Zhiwen Wang
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,SynBio Research Platform, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, China
| | - Meiyu Zheng
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,SynBio Research Platform, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, China
| | - Tao Chen
- Department of Biochemical Engineering, School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,Frontier Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (MOE), School of Chemical Engineering and Technology, Tianjin University, Tianjin, China.,SynBio Research Platform, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin, China
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5
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van Schie MMCH, Spöring JD, Bocola M, Domínguez de María P, Rother D. Applied biocatalysis beyond just buffers - from aqueous to unconventional media. Options and guidelines. GREEN CHEMISTRY : AN INTERNATIONAL JOURNAL AND GREEN CHEMISTRY RESOURCE : GC 2021; 23:3191-3206. [PMID: 34093084 PMCID: PMC8111672 DOI: 10.1039/d1gc00561h] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Accepted: 03/26/2021] [Indexed: 05/09/2023]
Abstract
In nature, enzymes conventionally operate under aqueous conditions. Because of this, aqueous buffers are often the choice for reaction media when enzymes are applied in chemical synthesis. However, to meet the demands of an industrial application, due to the poor water solubility of many industrially relevant compounds, an aqueous reaction system will often not be able to provide sufficient substrate loadings. A switch to a non-aqueous solvent system can provide a solution, which is already common for lipases, but more challenging for biocatalysts from other enzyme classes. The choices in solvent types and systems, however, can be overwhelming. Furthermore, some engineering of the protein structure of biocatalyst formulation is required. In this review, a guide for those working with biocatalysts, who look for a way to increase their reaction productivity, is presented. Examples reported clearly show that bulk water is not necessarily required for biocatalytic reactions and that clever solvent systems design can support increased product concentrations thereby decreasing waste formation. Additionally, under these conditions, enzymes can also be combined in cascades with other, water-sensitive, chemical catalysts. Finally, we show that the application of non-aqueous solvents in biocatalysis can actually lead to more sustainable processes. At the hand of flowcharts, following simple questions, one can quickly find what solvent systems are viable.
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Affiliation(s)
- Morten M C H van Schie
- Institute of Bio- and Geosciences (IBG-1): Biotechnology, Forschungszentrum Jülich GmbH 52425 Jülich Germany
| | - Jan-Dirk Spöring
- Institute of Bio- and Geosciences (IBG-1): Biotechnology, Forschungszentrum Jülich GmbH 52425 Jülich Germany
- Aachen Biology and Biotechnology, RWTH Aachen University 52056 Aachen Germany
| | - Marco Bocola
- Enzymaster Deutschland GmbH Neusser Str. 39 40219 Düsseldorf Germany
| | | | - Dörte Rother
- Institute of Bio- and Geosciences (IBG-1): Biotechnology, Forschungszentrum Jülich GmbH 52425 Jülich Germany
- Aachen Biology and Biotechnology, RWTH Aachen University 52056 Aachen Germany
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6
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Brogan APS. Preparation and application of solvent-free liquid proteins with enhanced thermal and anhydrous stabilities. NEW J CHEM 2021. [DOI: 10.1039/d1nj00467k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This perspective details a robust chemical modification strategy to protect proteins from temperature, aggregation, and non-aqueous environments.
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7
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Concept Study for an Integrated Reactor-Crystallizer Process for the Continuous Biocatalytic Synthesis of (S)-1-(3-Methoxyphenyl)ethylamine. CRYSTALS 2020. [DOI: 10.3390/cryst10050345] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
An integrated biocatalysis-crystallization concept was developed for the continuous amine transaminase-catalyzed synthesis of (S)-1-(3-methoxyphenyl)ethylamine, which is a valuable intermediate for the synthesis of rivastigmine, a highly potent drug for the treatment of early stage Alzheimer’s disease. The three-part vessel system developed for this purpose consists of a membrane reactor for the continuous synthesis of the product amine, a saturator vessel for the continuous supply of the amine donor isopropylammonium and the precipitating reagent 3,3-diphenylpropionate and a crystallizer in which the product amine can continuously precipitate as (S)-1-(3-methoxyphenyl)ethylammonium-3,3-diphenylpropionate.
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8
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Ibn Majdoub Hassani FZ, Amzazi S, Kreit J, Lavandera I. Deep Eutectic Solvents as Media in Alcohol Dehydrogenase‐Catalyzed Reductions of Halogenated Ketones. ChemCatChem 2019. [DOI: 10.1002/cctc.201901582] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Fatima Zohra Ibn Majdoub Hassani
- Biochemistry and Immunology LaboratoryFaculty of SciencesMohammed V University BP 1014 Avenue Ibn Batouta Agdal Rabat 10090 Morocco
- Organic and Inorganic Chemistry DepartmentUniversity of Oviedo Avenida Julián Clavería 8 Oviedo 33006 Spain
| | - Saaid Amzazi
- Biochemistry and Immunology LaboratoryFaculty of SciencesMohammed V University BP 1014 Avenue Ibn Batouta Agdal Rabat 10090 Morocco
| | - Joseph Kreit
- Biochemistry and Immunology LaboratoryFaculty of SciencesMohammed V University BP 1014 Avenue Ibn Batouta Agdal Rabat 10090 Morocco
| | - Iván Lavandera
- Organic and Inorganic Chemistry DepartmentUniversity of Oviedo Avenida Julián Clavería 8 Oviedo 33006 Spain
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9
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Kulig J, Sehl T, Mackfeld U, Wiechert W, Pohl M, Rother D. An Enzymatic 2-Step Cofactor and Co-Product Recycling Cascade towards a Chiral 1,2-Diol. Part I: Cascade Design. Adv Synth Catal 2019; 361:2607-2615. [PMID: 31244575 PMCID: PMC6582613 DOI: 10.1002/adsc.201900187] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 04/10/2019] [Indexed: 12/03/2022]
Abstract
Alcohol dehydrogenases are of high interest for stereoselective syntheses of chiral building blocks such as 1,2-diols. As this class of enzymes requires nicotinamide cofactors, their application in biotechnological synthesis reactions is economically only feasible with appropriate cofactor regeneration. Therefore, a co-substrate is oxidized to the respective co-product that accumulates in equal concentration to the desired target product. Co-product removal during the course of the reaction shifts the reaction towards formation of the target product and minimizes undesired side effects. Here we describe an atom efficient enzymatic cofactor regeneration system where the co-product of the ADH is recycled as a substrate in another reaction set. A 2-step enzymatic cascade consisting of a thiamine diphosphate (ThDP)-dependent carboligase and an alcohol dehydrogenase is presented here as a model reaction. In the first step benzaldehyde and acetaldehyde react to a chiral 2-hydroxy ketone, which is subsequently reduced by to a 1,2-diol. By choice of an appropriate co-substrate (here: benzyl alcohol) for the cofactor regeneration in the alcohol dehydrogenases (ADH)-catalyzed step, the co-product (here: benzaldehyde) can be used as a substrate for the carboligation step. Even without any addition of benzaldehyde in the first reaction step, this cascade design yielded 1,2-diol concentrations of >100 mM with optical purities (ee, de) of up to 99%. Moreover, this approach overcomes the low benzaldehyde solubility in aqueous systems and optimizes the atom economy of the reaction by reduced waste production. The example presented here for the 2-step recycling cascade of (1R,2R)-1-phenylpropane-1,2-diol can be applied for any set of enzymes, where the co-products of one process step serve as substrates for a coupled reaction.
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Affiliation(s)
- Justyna Kulig
- Forschungszentrum Jülich GmbH, IBG-1: BiotechnologyWilhelm-Johnen-Straße52428JülichGermany
| | - Torsten Sehl
- Forschungszentrum Jülich GmbH, IBG-1: BiotechnologyWilhelm-Johnen-Straße52428JülichGermany
| | - Ursula Mackfeld
- Forschungszentrum Jülich GmbH, IBG-1: BiotechnologyWilhelm-Johnen-Straße52428JülichGermany
| | - Wolfgang Wiechert
- Forschungszentrum Jülich GmbH, IBG-1: BiotechnologyWilhelm-Johnen-Straße52428JülichGermany
| | - Martina Pohl
- Forschungszentrum Jülich GmbH, IBG-1: BiotechnologyWilhelm-Johnen-Straße52428JülichGermany
| | - Dörte Rother
- Forschungszentrum Jülich GmbH, IBG-1: BiotechnologyWilhelm-Johnen-Straße52428JülichGermany
- RWTH Aachen University, ABBtAachen Biology and Biotechnology52074AachenGermany
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10
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Uhrich D, Jang HY, Park JB, von Langermann J. Characterization and application of chemical-resistant polyurethane-based enzyme and whole cell compartments. J Biotechnol 2019; 289:31-38. [PMID: 30439386 DOI: 10.1016/j.jbiotec.2018.11.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 10/23/2018] [Accepted: 11/07/2018] [Indexed: 01/28/2023]
Abstract
This study presents the preparation and physical-chemical characterization of chemical resistant polyurethane-based compartments for biocatalytic application. The artificial compartments were prepared from an emulsion of polymer precursor and an aqueous phase that includes a biocatalytic reaction system. After curing, highly dispersed aqueous domains were obtained, which still contain the entire biocatalytic reaction system and remain fixed in the solid polymer preparation. The tensile and compression behavior of the prepared polymeric material is not significantly affected by the incorporation and facilitates excellent stability against various organic solvents and acid solutions. Thereby, the compartments can be used not only for enantioselective alcohol-dehydrogenase catalyzed reduction but also for a whole cell catalyzed hydrolysis of esters. Moreover, the compartmented whole-cell system was considerably stable to allow multiple reuses without a noticeable loss of catalytic activity of the incorporated whole cell catalytic reaction system.
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Affiliation(s)
- Diana Uhrich
- Biocatalytic Synthesis Group, Institute of Chemistry, University of Rostock, Rostock, Germany
| | - Hyun-Young Jang
- Department of Food Science and Engineering, Ewha Womans University, Seoul, Republic of Korea
| | - Jin-Byung Park
- Department of Food Science and Engineering, Ewha Womans University, Seoul, Republic of Korea
| | - Jan von Langermann
- Biocatalytic Synthesis Group, Institute of Chemistry, University of Rostock, Rostock, Germany.
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11
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Jäger VD, Lamm R, Kloß R, Kaganovitch E, Grünberger A, Pohl M, Büchs J, Jaeger KE, Krauss U. A Synthetic Reaction Cascade Implemented by Colocalization of Two Proteins within Catalytically Active Inclusion Bodies. ACS Synth Biol 2018; 7:2282-2295. [PMID: 30053372 DOI: 10.1021/acssynbio.8b00274] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In nature, enzymatic reaction cascades, i.e., realized in metabolic networks, operate with unprecedented efficacy, with the reactions often being spatially and temporally orchestrated. The principle of "learning from nature" has in recent years inspired the setup of synthetic reaction cascades combining biocatalytic reaction steps to artificial cascades. Hereby, the spatial organization of multiple enzymes, e.g., by coimmobilization, remains a challenging task, as currently no generic principles are available that work for every enzyme. We here present a tunable, genetically programmed coimmobilization strategy that relies on the fusion of a coiled-coil domain as aggregation inducing-tag, resulting in the formation of catalytically active inclusion body coimmobilizates (Co-CatIBs). Coexpression and coimmobilization was proven using two fluorescent proteins, and the strategy was subsequently extended to two enzymes, which enabled the realization of an integrated enzymatic two-step cascade for the production of (1 R,2 R)-1-phenylpropane-1,2-diol (PPD), a precursor of the calicum channel blocker diltiazem. In particular, the easy production and preparation of Co-CatIBs, readily yielding a biologically produced enzyme immobilizate renders the here presented strategy an interesting alternative to existing cascade immobilization techniques.
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Affiliation(s)
- Vera D. Jäger
- Institut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Robin Lamm
- AVT-Chair for Biochemical Engineering, RWTH Aachen University, D-52074 Aachen, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Ramona Kloß
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Eugen Kaganovitch
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
| | - Alexander Grünberger
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Multiscale Bioengineering group, Bielefeld University, D-33615 Bielefeld, Germany
| | - Martina Pohl
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Jochen Büchs
- AVT-Chair for Biochemical Engineering, RWTH Aachen University, D-52074 Aachen, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Karl-Erich Jaeger
- Institut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Ulrich Krauss
- Institut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany
- Bioeconomy Science Center (BioSc), Forschungszentrum Jülich, D-52425 Jülich, Germany
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12
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Affiliation(s)
- Shuke Wu
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
| | - Zhi Li
- Department of Chemical and Biomolecular Engineering; National University of Singapore; 4 Engineering Drive 4 Singapore 117585 Singapore
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13
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Popłoński J, Reiter T, Kroutil W. Biocatalytic Racemization Employing TeSADH: Substrate Scope and Organic Solvent Compatibility for Dynamic Kinetic Resolution. ChemCatChem 2018. [DOI: 10.1002/cctc.201701395] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Jarosław Popłoński
- Department of Chemistry; Wrocław University of Environmental and Life Sciences; C.K. Norwida 25 50-375 Wrocław Poland
| | - Tamara Reiter
- Institute of Chemistry, Organic and Bioorganic Chemistry; University of Graz, NAWI Graz; Heinrichstrasse 28 8010 Graz Austria
| | - Wolfgang Kroutil
- Institute of Chemistry, Organic and Bioorganic Chemistry; University of Graz, NAWI Graz; Heinrichstrasse 28 8010 Graz Austria
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14
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Kloss R, Karmainski T, Jäger VD, Hahn D, Grünberger A, Baumgart M, Krauss U, Jaeger KE, Wiechert W, Pohl M. Tailor-made catalytically active inclusion bodies for different applications in biocatalysis. Catal Sci Technol 2018. [DOI: 10.1039/c8cy01891j] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
CatIB properties can be tailored to the requirements of different reaction systems using two different coiled-coil domains as fusion tags.
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15
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Nussbaumer MG, Nguyen PQ, Tay PKR, Naydich A, Hysi E, Botyanszki Z, Joshi NS. Bootstrapped Biocatalysis: Biofilm-Derived Materials as Reversibly Functionalizable Multienzyme Surfaces. ChemCatChem 2017; 9:4328-4333. [PMID: 30519367 PMCID: PMC6277024 DOI: 10.1002/cctc.201701221] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Indexed: 01/04/2023]
Abstract
Cell-free biocatalysis systems offer many benefits for chemical manufacturing, but their widespread applicability is hindered by high costs associated with enzyme purification, modification, and immobilization on solid substrates, in addition to the cost of the material substrates themselves. Herein, we report a "bootstrapped" biocatalysis substrate material that is produced directly in bacterial culture and is derived from biofilm matrix proteins, which self-assemble into a nanofibrous mesh. We demonstrate that this material can simultaneously purify and immobilize multiple enzymes site specifically and directly from crude cell lysates by using a panel of genetically programmed, mutually orthogonal conjugation domains. We further demonstrate the utility of the technique in a bienzymatic stereoselective reduction coupled with a cofactor recycling scheme. The domains allow for several cycles of selective removal and replacement of enzymes under mild conditions to regenerate the catalyst system.
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Affiliation(s)
- Martin G Nussbaumer
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115 (USA)
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
| | - Peter Q Nguyen
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115 (USA)
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
| | - Pei K R Tay
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115 (USA)
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
| | - Alexander Naydich
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
| | - Erisa Hysi
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
| | - Zsofia Botyanszki
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115 (USA)
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
| | - Neel S Joshi
- Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA 02115 (USA)
- Joshi School of Engineering and Applied Sciences Harvard University Cambridge, MA 02138 (USA)
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16
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Lechner H, Soriano P, Poschner R, Hailes HC, Ward JM, Kroutil W. Library of Norcoclaurine Synthases and Their Immobilization for Biocatalytic Transformations. Biotechnol J 2017; 13:e1700542. [DOI: 10.1002/biot.201700542] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 10/17/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Horst Lechner
- Institute of Chemistry; University of Graz, NAWI Graz, BioTechMed Graz; Heinrichstraße 28 8010 Graz Austria
| | - Pablo Soriano
- Institute of Chemistry; University of Graz, NAWI Graz, BioTechMed Graz; Heinrichstraße 28 8010 Graz Austria
| | - Roman Poschner
- Institute of Chemistry; University of Graz, NAWI Graz, BioTechMed Graz; Heinrichstraße 28 8010 Graz Austria
| | - Helen C. Hailes
- Department of Chemistry; University College London; 20 Gordon Street, WC1H 0AJ London UK
| | - John M. Ward
- Department of Biochemical Engineering; University College London; Gower Street, WC1E 6BT London UK
| | - Wolfgang Kroutil
- Institute of Chemistry; University of Graz, NAWI Graz, BioTechMed Graz; Heinrichstraße 28 8010 Graz Austria
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17
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Schrittwieser JH, Velikogne S, Hall M, Kroutil W. Artificial Biocatalytic Linear Cascades for Preparation of Organic Molecules. Chem Rev 2017; 118:270-348. [DOI: 10.1021/acs.chemrev.7b00033] [Citation(s) in RCA: 371] [Impact Index Per Article: 53.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Joerg H. Schrittwieser
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Stefan Velikogne
- ACIB
GmbH, Department of Chemistry, University of Graz, Heinrichstrasse
28, 8010 Graz, Austria
| | - Mélanie Hall
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
| | - Wolfgang Kroutil
- Institute
of Chemistry, Organic and Bioorganic Chemistry, University of Graz, NAWI Graz, BioTechMed Graz, Heinrichstrasse 28, 8010 Graz, Austria
- ACIB
GmbH, Department of Chemistry, University of Graz, Heinrichstrasse
28, 8010 Graz, Austria
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18
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Yang X, Ye L, Li A, Yang C, Yu H, Gu J, Guo F, Jiang L, Wang F, Yu H. Engineering of d-fructose-6-phosphate aldolase A for improved activity towards cinnamaldehyde. Catal Sci Technol 2017. [DOI: 10.1039/c6cy01622g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
d-Fructose-6-phosphate aldolase A (FSAA) from Escherichia coli was engineered for enhanced catalytic efficiency towards cinnamaldehyde.
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19
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Wachtmeister J, Jakoblinnert A, Rother D. Stereoselective Two-Step Biocatalysis in Organic Solvent: Toward All Stereoisomers of a 1,2-Diol at High Product Concentrations. Org Process Res Dev 2016. [DOI: 10.1021/acs.oprd.6b00232] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
| | - Andre Jakoblinnert
- Piramal
Healthcare
UK Ltd., Division of Biocatalysis, The Wilton Centre, R345, TS10 4RF Redcar, United Kingdom
| | - Dörte Rother
- IBG-1: Biotechnology,
Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
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20
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Rother D, Döbber J, Kloß R, Jäger V, Krauss U, Pohl M. Enzyme Toolboxes & Reaction Engineering - Solutions for Applied Viocatalysis. CHEM-ING-TECH 2016. [DOI: 10.1002/cite.201650289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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21
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Maugeri Z, Rother D. Application of Imine Reductases (IREDs) in Micro-Aqueous Reaction Systems. Adv Synth Catal 2016. [DOI: 10.1002/adsc.201501154] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Zaira Maugeri
- Jülich GmbH; Institute of Bio- and Geosciences 1; 52428 Jülich Germany
| | - Dörte Rother
- Jülich GmbH; Institute of Bio- and Geosciences 1; 52428 Jülich Germany
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22
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Wachtmeister J, Rother D. Recent advances in whole cell biocatalysis techniques bridging from investigative to industrial scale. Curr Opin Biotechnol 2016; 42:169-177. [PMID: 27318259 DOI: 10.1016/j.copbio.2016.05.005] [Citation(s) in RCA: 186] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2016] [Revised: 05/20/2016] [Accepted: 05/21/2016] [Indexed: 11/25/2022]
Abstract
Recent advances in biocatalysis have strongly boosted its recognition as a valuable addition to traditional chemical synthesis routes. As for any catalytic process, catalyst's costs and stabilities are of highest relevance for the economic application in chemical manufacturing. Employing biocatalysts as whole cells circumvents the need of cell lysis and enzyme purification and hence strongly cuts on cost. At the same time, residual cell wall components can shield the entrapped enzyme from potentially harmful surroundings and aid to enable applications far from natural enzymatic environments. Further advantages are the close proximity of reactants and catalysts as well as the inherent presence of expensive cofactors. Here, we review and comment on benefits and recent advances in whole cell biocatalysis.
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Affiliation(s)
| | - Dörte Rother
- IBG-1: Biotechnology, Forschungszentrum Jülich GmbH, 52428 Jülich, Germany.
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23
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Wachtmeister J, Mennicken P, Hunold A, Rother D. Modularized Biocatalysis: Immobilization of Whole Cells for Preparative Applications in Microaqueous Organic Solvents. ChemCatChem 2015. [DOI: 10.1002/cctc.201501099] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jochen Wachtmeister
- Institute of Bio- and Geosciences, IBG-1: Biotechnology; Forschungszentrum Jülich GmbH; 52425 Jülich Germany
| | - Philip Mennicken
- Institute of Bio- and Geosciences, IBG-1: Biotechnology; Forschungszentrum Jülich GmbH; 52425 Jülich Germany
| | - Andreas Hunold
- Institute of Bio- and Geosciences, IBG-1: Biotechnology; Forschungszentrum Jülich GmbH; 52425 Jülich Germany
| | - Dörte Rother
- Institute of Bio- and Geosciences, IBG-1: Biotechnology; Forschungszentrum Jülich GmbH; 52425 Jülich Germany
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24
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Willrodt C, Karande R, Schmid A, Julsing MK. Guiding efficient microbial synthesis of non-natural chemicals by physicochemical properties of reactants. Curr Opin Biotechnol 2015; 35:52-62. [PMID: 25835779 DOI: 10.1016/j.copbio.2015.03.010] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2015] [Revised: 03/12/2015] [Accepted: 03/13/2015] [Indexed: 11/18/2022]
Abstract
The recent progress in sustainable chemistry and in synthetic biology increased the interest of chemical and pharmaceutical industries to implement microbial processes for chemical synthesis. However, most organisms used in biotechnological applications are not evolved by Nature for the production of hydrophobic, non-charged, volatile, or toxic compounds. In order to overcome this discrepancy, bioprocess design should consist of an integrated approach addressing pathway, cellular, reaction, and process engineering. Highlighting selected examples, we show that surprisingly often Nature provides conceptual solutions to enable chemical synthesis. Complemented by established methods from (bio)chemical and metabolic engineering, these concepts offer potential strategies yet to be explored and translated into innovative technical solutions enabling sustainable microbial production of non-natural chemicals.
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Affiliation(s)
- Christian Willrodt
- Department of Solar Materials, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany
| | - Rohan Karande
- Department of Solar Materials, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany
| | - Andreas Schmid
- Department of Solar Materials, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany.
| | - Mattijs K Julsing
- Laboratory of Chemical Biotechnology, Department of Biochemical and Chemical Engineering, TU Dortmund University, Dortmund, Germany
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25
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Muschiol J, Peters C, Oberleitner N, Mihovilovic MD, Bornscheuer UT, Rudroff F. Cascade catalysis – strategies and challenges en route to preparative synthetic biology. Chem Commun (Camb) 2015; 51:5798-811. [DOI: 10.1039/c4cc08752f] [Citation(s) in RCA: 251] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
In this feature article recent progress and future perspectives of cascade catalysis combining bio/bio or bio/chemo catalysts are presented.
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Affiliation(s)
- Jan Muschiol
- Institute of Biochemistry
- Dept. of Biotechnology & Enzyme Catalysis
- Greifswald University
- 17489 Greifswald
- Germany
| | - Christin Peters
- Institute of Biochemistry
- Dept. of Biotechnology & Enzyme Catalysis
- Greifswald University
- 17489 Greifswald
- Germany
| | - Nikolin Oberleitner
- Institute of Applied Synthetic Chemistry
- Vienna University of Technology
- 1060 Vienna
- Austria
| | - Marko D. Mihovilovic
- Institute of Applied Synthetic Chemistry
- Vienna University of Technology
- 1060 Vienna
- Austria
| | - Uwe T. Bornscheuer
- Institute of Biochemistry
- Dept. of Biotechnology & Enzyme Catalysis
- Greifswald University
- 17489 Greifswald
- Germany
| | - Florian Rudroff
- Institute of Applied Synthetic Chemistry
- Vienna University of Technology
- 1060 Vienna
- Austria
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26
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Manzuna Sapu C, Görbe T, Lihammar R, Bäckvall JE, Deska J. Migratory Dynamic Kinetic Resolution of Carbocyclic Allylic Alcohols. Org Lett 2014; 16:5952-5. [DOI: 10.1021/ol502979g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
| | - Tamás Görbe
- Department
of Organic Chemistry, Stockholms Universitet, 10691 Stockholm, Sweden
| | - Richard Lihammar
- Department
of Organic Chemistry, Stockholms Universitet, 10691 Stockholm, Sweden
| | - Jan-E. Bäckvall
- Department
of Organic Chemistry, Stockholms Universitet, 10691 Stockholm, Sweden
| | - Jan Deska
- Department
für Chemie, Universität zu Köln, 50939 Cologne, Germany
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