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Martínková L, Kotik M, Kulik N, Křístková B, Šťastná K, Winkler M. Aldoxime dehydratases: production, immobilization, and use in multistep processes. Appl Microbiol Biotechnol 2024; 108:518. [PMID: 39545989 PMCID: PMC11568032 DOI: 10.1007/s00253-024-13272-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/31/2024] [Accepted: 08/01/2024] [Indexed: 11/17/2024]
Abstract
The synthesis of nitriles is of utmost importance for preparative organic chemistry. The classical routes are often associated with disadvantages such as toxicity of the reagents and drastic conditions. The uses of enzymes like aldoxime dehydratases (Oxds) and hydroxynitrile lyases constitute attractive benign alternatives. In this review, we summarize the recent trends regarding Oxds. Thousands of oxd genes were sequenced but less than thirty Oxds were investigated on protein level. We give an overview of these Oxds, their sequence analysis, conditions required for their overexpression, and their purification and assays. We then focus on the use of Oxds especially in multistep reactions combining the chemical or chemoenzymatic synthesis of aldoximes from different starting materials with the enzymatic dehydration of aldoximes to nitriles, possibly followed by the hydration of nitriles to amides. Progress in Oxd immobilization is also highlighted. Based on data published mainly in the last 5 years, we evaluate the industrial prospects of these enzyme processes in comparison with some other innovations in nitrile synthesis. KEY POINTS: • Aldoxime dehydratases (Oxds) are promising for cyanide-free routes to nitriles • A comprehensive overview of wet-lab explored Oxds is provided • Recent trends include combining Oxds with other enzymes or chemical catalysts.
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Affiliation(s)
- Ludmila Martínková
- Laboratory of Biotransformation, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-142 00, Prague, Czech Republic.
| | - Michael Kotik
- Laboratory of Biotransformation, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-142 00, Prague, Czech Republic
| | - Natalia Kulik
- Laboratory of Photosynthesis, Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Novohradská 237, 379 81, Třeboň, Czech Republic
| | - Barbora Křístková
- Laboratory of Biotransformation, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-142 00, Prague, Czech Republic
- Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Technická 5, 166 28, Prague, Czech Republic
| | - Katarína Šťastná
- Laboratory of Biotransformation, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-142 00, Prague, Czech Republic
- Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030/8, 128 44, Prague, Czech Republic
| | - Margit Winkler
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria.
- Austrian Centre of Industrial Biotechnology GmbH, Krenngasse 37, 8010, Graz, Austria.
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2
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Wu R, Li D, Chen Q, Luo Z, Zhou J, Mao J. Optimization of vanillin biosynthesis in Escherichia coli K12 MG1655 through metabolic engineering. BIORESOURCE TECHNOLOGY 2024; 411:131189. [PMID: 39127360 DOI: 10.1016/j.biortech.2024.131189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Revised: 07/24/2024] [Accepted: 07/29/2024] [Indexed: 08/12/2024]
Abstract
Vanillin is an important flavouring agent applied in food, spices, pharmaceutical industries and other fields. Microbial biosynthesis of vanillin is considered a sustainable and economically feasible alternative to traditional chemical synthesis. In this study, Escherichia coli K12 MG1655 was used for the de novo synthesis of VAN by screening highly active carboxylic acid reductases and catechol O-methyltransferases, optimising the protocatechuic acid pathway, and regulating competitive metabolic pathways. Additionally, major alcohol by-products were identified and decreased by deleting three endogenous aldo-keto reductases and three alcohol dehydrogenases. Finally, a highest VAN titer was achieved to 481.2 mg/L in a 5 L fermenter from glucose. This work provides a valuable example of pathway engineering and screens several enzyme variants for the first time in E. coli.
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Affiliation(s)
- Renga Wu
- National Engineering Research Center for Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Science Center for Future Foods, Jiangnan University, Wuxi, Jiangsu 214122, China; Engineering Research Center of Ministry of Education on Food Synthetic Biotechnology, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Dong Li
- Science Center for Future Foods, Jiangnan University, Wuxi, Jiangsu 214122, China; Engineering Research Center of Ministry of Education on Food Synthetic Biotechnology, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Qihang Chen
- Science Center for Future Foods, Jiangnan University, Wuxi, Jiangsu 214122, China; Engineering Research Center of Ministry of Education on Food Synthetic Biotechnology, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Zhengshan Luo
- Science Center for Future Foods, Jiangnan University, Wuxi, Jiangsu 214122, China; Engineering Research Center of Ministry of Education on Food Synthetic Biotechnology, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Jingwen Zhou
- Science Center for Future Foods, Jiangnan University, Wuxi, Jiangsu 214122, China; Engineering Research Center of Ministry of Education on Food Synthetic Biotechnology, Jiangnan University, Wuxi, Jiangsu 214122, China
| | - Jian Mao
- National Engineering Research Center for Cereal Fermentation and Food Biomanufacturing, School of Food Science and Technology, Jiangnan University, Wuxi, Jiangsu 214122, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; Jiangnan University (Shaoxing) Industrial Technology Research Institute, National Engineering Research Center of Huangjiu, Zhejiang Guyuelongshan Shaoxing Wine Co., Ltd., Shaoxing, Zhejiang 312000, China.
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3
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Winkler M, Breuer HG, Schober L. Aldehyde Reductase Activity of Carboxylic Acid Reductases. Chembiochem 2024; 25:e202400121. [PMID: 38349346 DOI: 10.1002/cbic.202400121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 02/13/2024] [Indexed: 03/09/2024]
Abstract
Carboxylic acid reductase enzymes (CARs) are well known for the reduction of a wide range of carboxylic acids to the respective aldehydes. One of the essential CAR domains - the reductase domain (R-domain) - was recently shown to catalyze the standalone reduction of carbonyls, including aldehydes, which are typically considered to be the final product of carboxylic acid reduction by CAR. We discovered that the respective full-length CARs were equally able to reduce aldehydes. Herein we aimed to shed light on the impact of this activity on aldehyde production and acid reduction in general. Our data explains previously inexplicable results and a new CAR from Mycolicibacterium wolinskyi is presented.
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Affiliation(s)
- Margit Winkler
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria
- acib - Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010, Graz, Austria
| | - Hannah G Breuer
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria
| | - Lukas Schober
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010, Graz, Austria
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4
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Li JM, Shi K, Li AT, Zhang ZJ, Yu HL, Xu JH. Development of a Thermodynamically Favorable Multi-enzyme Cascade Reaction for Efficient Sustainable Production of ω-Amino Fatty Acids and α,ω-Diamines. CHEMSUSCHEM 2024; 17:e202301477. [PMID: 38117609 DOI: 10.1002/cssc.202301477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 11/25/2023] [Accepted: 12/19/2023] [Indexed: 12/22/2023]
Abstract
Aliphatic ω-amino fatty acids (ω-AFAs) and α,ω-diamines (α,ω-DMs) are essential monomers for the production of nylons. Development of a sustainable biosynthesis route for ω-AFAs and α,ω-DMs is crucial in addressing the challenges posed by climate change. Herein, we constructed an unprecedented thermodynamically favorable multi-enzyme cascade (TherFavMEC) for the efficient sustainable biosynthesis of ω-AFAs and α,ω-DMs from cheap α,ω-dicarboxylic acids (α,ω-DAs). This TherFavMEC was developed by incorporating bioretrosynthesis analysis tools, reaction Gibbs free energy calculations, thermodynamic equilibrium shift strategies and cofactor (NADPH&ATP) regeneration systems. The molar yield of 6-aminohexanoic acid (6-ACA) from adipic acid (AA) was 92.3 %, while the molar yield from 6-ACA to 1,6-hexanediamine (1,6-HMD) was 96.1 %, which were significantly higher than those of previously reported routes. Furthermore, the biosynthesis of ω-AFAs and α,ω-DMs from 20.0 mM α,ω-DAs (C6-C9) was also performed, giving 11.2 mM 1,6-HMD (56.0 % yield), 14.8 mM 1,7-heptanediamine (74.0 % yield), 17.4 mM 1,8-octanediamine (87.0 % yield), and 19.7 mM 1,9-nonanediamine (98.5 % yield), respectively. The titers of 1,9-nonanediamine, 1,8-octanediamine, 1,7-heptanediamine and 1,6-HMD were improved by 328-fold, 1740-fold, 87-fold and 3.8-fold compared to previous work. Therefore, this work holds great potential for the bioproduction of ω-AFAs and α,ω-DMs.
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Affiliation(s)
- Ju-Mou Li
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Centre for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, People's Republic of China
| | - Kun Shi
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Centre for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, People's Republic of China
| | - Ai-Tao Li
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Key Laboratory of Industrial Biotechnology School of Life Sciences, Hubei University, #368 Youyi Road, Wuhan, 430062, P.R. China
| | - Zhi-Jun Zhang
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Centre for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, People's Republic of China
| | - Hui-Lei Yu
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Centre for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, People's Republic of China
| | - Jian-He Xu
- State Key Laboratory of Bioreactor Engineering, Shanghai Collaborative Innovation Centre for Biomanufacturing, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, People's Republic of China
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5
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Goj D, Ebner S, Horvat M, Arhar S, Martínková L, Winkler M. Cell-free reduction of carboxylic acids with secreted carboxylic acid reductase. J Biotechnol 2024; 382:44-50. [PMID: 38266924 DOI: 10.1016/j.jbiotec.2024.01.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 12/20/2023] [Accepted: 01/18/2024] [Indexed: 01/26/2024]
Abstract
Mycobacterium marinum CAR (MmCAR) is one of the most widely used CARs as the key enzyme for the synthesis of aldehydes, alcohols and further products from the respective carboxylic acids. Herein, we describe the first functionally secreted 131 kDa CAR and its isolated A-domain using Komagataella phaffii and a methanol-free constitutive expression strategy. Precipitated and lyophilized MmCAR (500 µg) was isolated from the culture supernatant and showed no decrease in activity for piperonylic acid (80% conversion), even when stored for up to 3 weeks at 4°C. Lyophilized MmCAR precipitate gave 48% yield of E/Z-nonanal-4-nitrobenzoyloxime from the reduction of nonanoic acid and in-situ derivatization with O-4-nitrobenzoyl-hydroxylamine. Furthermore, K. phaffii could successfully secrete the MmCAR adenylation domain. Its activity was confirmed by the amidation of benzoic acid with n-hexylamine. Neither enzyme variant was glycosylated by the yeast. In summary, functional CAR can be secreted by K. phaffii and used for cell free conversion of carboxylic acids to various products.
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Affiliation(s)
- Dominic Goj
- Institute of Molecular Biotechnology, Graz University of Technology, NAWI Graz, Petersgasse 14, Graz, Austria
| | - Stella Ebner
- Institute of Molecular Biotechnology, Graz University of Technology, NAWI Graz, Petersgasse 14, Graz, Austria
| | - Melissa Horvat
- Institute of Molecular Biotechnology, Graz University of Technology, NAWI Graz, Petersgasse 14, Graz, Austria
| | - Simon Arhar
- Austrian Center of Industrial Biotechnology, Krenngasse 37, Graz, Austria
| | - Ludmila Martínková
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, Prague CZ-14200, Czech Republic
| | - Margit Winkler
- Institute of Molecular Biotechnology, Graz University of Technology, NAWI Graz, Petersgasse 14, Graz, Austria; Austrian Center of Industrial Biotechnology, Krenngasse 37, Graz, Austria.
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6
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Schober L, Dobiašová H, Jurkaš V, Parmeggiani F, Rudroff F, Winkler M. Enzymatic reactions towards aldehydes: An overview. FLAVOUR FRAG J 2023; 38:221-242. [PMID: 38505272 PMCID: PMC10947199 DOI: 10.1002/ffj.3739] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 03/01/2023] [Accepted: 03/06/2023] [Indexed: 03/21/2024]
Abstract
Many aldehydes are volatile compounds with distinct and characteristic olfactory properties. The aldehydic functional group is reactive and, as such, an invaluable chemical multi-tool to make all sorts of products. Owing to the reactivity, the selective synthesis of aldehydic is a challenging task. Nature has evolved a number of enzymatic reactions to produce aldehydes, and this review provides an overview of aldehyde-forming reactions in biological systems and beyond. Whereas some of these biotransformations are still in their infancy in terms of synthetic applicability, others are developed to an extent that allows their implementation as industrial biocatalysts.
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Affiliation(s)
- Lukas Schober
- Institute of Molecular BiotechnologyGraz University of TechnologyGrazAustria
| | - Hana Dobiašová
- Institute of Chemical and Environmental EngineeringSlovak University of TechnologyBratislavaSlovakia
| | - Valentina Jurkaš
- Institute of Molecular BiotechnologyGraz University of TechnologyGrazAustria
| | - Fabio Parmeggiani
- Dipartimento di Chimica, Materiali ed Ingegneria Chimica “Giulio Natta”Politecnico di MilanoMilanItaly
| | - Florian Rudroff
- Institute of Applied Synthetic ChemistryTU WienViennaAustria
| | - Margit Winkler
- Institute of Molecular BiotechnologyGraz University of TechnologyGrazAustria
- Area BiotransformationsAustrian Center of Industrial BiotechnologyGrazAustria
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7
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Butler ND, Anderson SR, Dickey RM, Nain P, Kunjapur AM. Combinatorial gene inactivation of aldehyde dehydrogenases mitigates aldehyde oxidation catalyzed by E. coli resting cells. Metab Eng 2023; 77:294-305. [PMID: 37100193 DOI: 10.1016/j.ymben.2023.04.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 04/11/2023] [Accepted: 04/23/2023] [Indexed: 04/28/2023]
Abstract
Aldehydes are attractive chemical targets both as end products in the flavors and fragrances industry and as intermediates due to their propensity for C-C bond formation. Here, we identify and address unexpected oxidation of a model collection of aromatic aldehydes, including many that originate from biomass degradation. When diverse aldehydes are supplemented to E. coli cells grown under aerobic conditions, as expected they are either reduced by the wild-type MG1655 strain or stabilized by a strain engineered for reduced aromatic aldehyde reduction (the E. coli RARE strain). Surprisingly, when these same aldehydes are supplemented to resting cell preparations of either E. coli strain, under many conditions we observe substantial oxidation. By performing combinatorial inactivation of six candidate aldehyde dehydrogenase genes in the E. coli genome using multiplexed automatable genome engineering (MAGE), we demonstrate that this oxidation can be substantially slowed, with greater than 50% retention of 6 out of 8 aldehydes when assayed 4 h after their addition. Given that our newly engineered strain exhibits reduced oxidation and reduction of aromatic aldehydes, we dubbed it the E. coli ROAR strain. We applied the new strain to resting cell biocatalysis for two kinds of reactions - the reduction of 2-furoic acid to furfural and the condensation of 3-hydroxy-benzaldehyde and glycine to form a beta hydroxylated non-standard amino acid. In each case, we observed substantial improvements in product titer 20 h after reaction initiation (9-fold and 10-fold, respectively). Moving forward, the use of this strain to generate resting cells should allow aldehyde product isolation, further enzymatic conversion, or chemical reactivity under cellular contexts that better accommodate aldehyde toxicity.
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Affiliation(s)
- Neil D Butler
- Department of Chemical & Biomolecular Engineering, University of Delaware, Newar, DE, 19716, USA
| | - Shelby R Anderson
- Department of Chemical & Biomolecular Engineering, University of Delaware, Newar, DE, 19716, USA
| | - Roman M Dickey
- Department of Chemical & Biomolecular Engineering, University of Delaware, Newar, DE, 19716, USA
| | - Priyanka Nain
- Department of Chemical & Biomolecular Engineering, University of Delaware, Newar, DE, 19716, USA
| | - Aditya M Kunjapur
- Department of Chemical & Biomolecular Engineering, University of Delaware, Newar, DE, 19716, USA.
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8
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Basri RS, Rahman RNZRA, Kamarudin NHA, Ali MSM. Carboxylic acid reductases: Structure, catalytic requirements, and applications in biotechnology. Int J Biol Macromol 2023; 240:124526. [PMID: 37080403 DOI: 10.1016/j.ijbiomac.2023.124526] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 04/07/2023] [Accepted: 04/16/2023] [Indexed: 04/22/2023]
Abstract
Biocatalysts have been gaining extra attention in recent decades due to their industrial-relevance properties, which may hasten the transition to a cleaner environment. Carboxylic acid reductases (CARs) are large, multi-domain proteins that can catalyze the reduction of carboxylic acids to corresponding aldehydes, with the presence of adenosine triphosphate (ATP) and nicotinamide adenine dinucleotide phosphate (NADPH). This biocatalytic reaction is of great interest due to the abundance of carboxylic acids in nature and the ability of CAR to convert carboxylic acids to a wide range of aldehydes essentially needed as end products such as vanillin or reaction intermediates for several compounds production such as alcohols, alkanes, and amines. This modular enzyme, found in bacteria and fungi, demands an activation via post-translational modification by the phosphopantetheinyl transferase (PPTase). Recent advances in the characterization and structural studies of CARs revealed valuable information about the enzymes' dynamics, mechanisms, and unique features. In this comprehensive review, we summarize the previous findings on the phylogeny, structural and mechanistic insight of the domains, post-translational modification requirement, strategies for the cofactors regeneration, the extensively broad aldehyde-related industrial application properties of CARs, as well as their recent immobilization approaches.
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Affiliation(s)
- Rose Syuhada Basri
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia
| | - Raja Noor Zaliha Raja Abd Rahman
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
| | - Nor Hafizah Ahmad Kamarudin
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Centre of Foundation Studies for Agricultural Science, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
| | - Mohd Shukuri Mohamad Ali
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; Institute of Bioscience, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia.
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9
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Winkler M, Horvat M, Schiefer A, Weilch V, Rudroff F, Pátek M, Martínková L. Organic Acid to Nitrile: A Chemoenzymatic Three-Step Route. Adv Synth Catal 2023; 365:37-42. [PMID: 37082351 PMCID: PMC10107818 DOI: 10.1002/adsc.202201053] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
Various widely applied compounds contain cyano-groups, and this functional group serves as a chemical handle for a whole range of different reactions. We report a cyanide free chemoenzymatic cascade for nitrile synthesis. The reaction pathway starts with a reduction of carboxylic acid to aldehyde by carboxylate reductase enzymes (CARs) applied as living cell biocatalysts. The second - chemical - step includes in situ oxime formation with hydroxylamine. The final direct step from oxime to nitrile is catalyzed by aldoxime dehydratases (Oxds). With compatible combinations of a CAR and an Oxd, applied in one-pot two-step reactions, several aliphatic and aryl-aliphatic target nitriles were obtained in more than 80% conversion. Phenylacetonitrile, for example, was prepared in 78% isolated yield. This chemoenzymatic route does not require cyanide salts, toxic metals, or undesired oxidants in contrast to entirely chemical procedures.
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Affiliation(s)
- Margit Winkler
- Institute of Molecular BiotechnologyGraz University of TechnologyPetersgasse 14A-8010GrazAustria
- acib GmbHKrenngasse 378010GrazAustria
| | - Melissa Horvat
- Institute of Molecular BiotechnologyGraz University of TechnologyPetersgasse 14A-8010GrazAustria
| | - Astrid Schiefer
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 9/OC-163A-1060ViennaAustria
| | - Victoria Weilch
- Institute of Molecular BiotechnologyGraz University of TechnologyPetersgasse 14A-8010GrazAustria
| | - Florian Rudroff
- Institute of Applied Synthetic ChemistryTU WienGetreidemarkt 9/OC-163A-1060ViennaAustria
| | - Miroslav Pátek
- Institute of Microbiology of the Czech Academy of SciencesVídeňská 1083CZ-142 20PragueCzech Republic
| | - Ludmila Martínková
- Institute of Microbiology of the Czech Academy of SciencesVídeňská 1083CZ-142 20PragueCzech Republic
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10
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Weber D, de Souza Bastos L, Winkler M, Ni Y, Aliev AE, Hailes HC, Rother D. Multi-enzyme catalysed processes using purified and whole-cell biocatalysts towards a 1,3,4-substituted tetrahydroisoquinoline †‡. RSC Adv 2023; 13:10097-10109. [PMID: 37006360 PMCID: PMC10053099 DOI: 10.1039/d3ra01210g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 03/21/2023] [Indexed: 03/31/2023] Open
Abstract
In this work, two multi-enzyme catalysed processes to access a 1,3,4-substituted tetrahydroisoquinoline (THIQ), using either purified enzymes or lyophilised whole-cell catalysts, are presented. A key focus was the first step in which the reduction of 3-hydroxybenzoic acid (3-OH-BZ) into 3-hydroxybenzaldehyde (3-OH-BA) was catalysed by a carboxylate reductase (CAR) enzyme. Incorporation of the CAR-catalysed step enables substituted benzoic acids as the aromatic components, which can potentially be obtained from renewable resources by microbial cell factories. In this reduction, the implementation of an efficient cofactor regeneration system of both ATP and NADPH was crucial. Two different recycling approaches, either using purified enzymes or lyophilised whole-cells, were established and compared. Both of them showed high conversions of the acid into 3-OH-BA (>80%). However, the whole-cell system showed superior performance because it allowed the combination of the first and second steps into a one-pot cascade with excellent HPLC yields (>99%, enantiomeric excess (ee) ≥ 95%) producing the intermediate 3-hydroxyphenylacetylcarbinol. Moreover, enhanced substrate loads could be achieved compared to the system employing only purified enzymes. The third and fourth steps were performed in a sequential mode to avoid cross-reactivities and the formation of several side products. Thus, (1R,2S)-metaraminol could be formed with high HPLC yields (>90%, isomeric content (ic) ≥ 95%) applying either purified or whole-cell transaminases from Bacillus megaterium (BmTA) or Chromobacterium violaceum (Cv2025). Finally, the cyclisation step was performed using either a purified or lyophilised whole-cell norcoclaurine synthase variant from Thalictrum flavum (ΔTfNCS-A79I), leading to the formation of the target THIQ product with high HPLC yields (>90%, ic > 90%). As many of the educts applied are from renewable resources and a complex product with three chiral centers can be gained by only four highly selective steps, a very step- and atom efficient approach to stereoisomerically pure THIQ is shown. In this work, two multi-enzyme catalysed processes to access a 1,3,4-substituted tetrahydroisoquinoline (THIQ), using either purified enzymes or lyophilised whole-cell catalysts, are presented.![]()
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Affiliation(s)
- Douglas Weber
- Institute of Bio- and Geosciences (IBG-1): Biotechnology, Forschungszentrum Juelich GmbH52425 JuelichGermany
- Aachen Biology and Biotechnology (ABBt), RWTH Aachen UniversityWorringer Weg 152062 AachenGermany
| | - Lucas de Souza Bastos
- Institute of Bio- and Geosciences (IBG-1): Biotechnology, Forschungszentrum Juelich GmbH52425 JuelichGermany
| | - Margit Winkler
- acib GmbHKrenngasse 37A-8010 GrazAustria
- Institute of Molecular Biotechnology, Graz University of TechnologyPetersgasse 148010 GrazAustria
| | - Yeke Ni
- Department of Chemistry, University College LondonLondonWC1H 0AJUK
| | - Abil E. Aliev
- Department of Chemistry, University College LondonLondonWC1H 0AJUK
| | - Helen C. Hailes
- Department of Chemistry, University College LondonLondonWC1H 0AJUK
| | - Doerte Rother
- Institute of Bio- and Geosciences (IBG-1): Biotechnology, Forschungszentrum Juelich GmbH52425 JuelichGermany
- Aachen Biology and Biotechnology (ABBt), RWTH Aachen UniversityWorringer Weg 152062 AachenGermany
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11
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Daniel B, Hashem C, Leithold M, Sagmeister T, Tripp A, Stolterfoht-Stock H, Messenlehner J, Keegan R, Winkler CK, Ling JG, Younes SH, Oberdorfer G, Abu Bakar FD, Gruber K, Pavkov-Keller T, Winkler M. Structure of the Reductase Domain of a Fungal Carboxylic Acid Reductase and Its Substrate Scope in Thioester and Aldehyde Reduction. ACS Catal 2022; 12:15668-15674. [PMID: 37180375 PMCID: PMC10168641 DOI: 10.1021/acscatal.2c04426] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Revised: 11/08/2022] [Indexed: 12/12/2022]
Abstract
The synthesis of aldehydes from carboxylic acids has long been a challenge in chemistry. In contrast to the harsh chemically driven reduction, enzymes such as carboxylic acid reductases (CARs) are considered appealing biocatalysts for aldehyde production. Although structures of single- and didomains of microbial CARs have been reported, to date no full-length protein structure has been elucidated. In this study, we aimed to obtain structural and functional information regarding the reductase (R) domain of a CAR from the fungus Neurospora crassa (Nc). The NcCAR R-domain revealed activity for N-acetylcysteamine thioester (S-(2-acetamidoethyl) benzothioate), which mimics the phosphopantetheinylacyl-intermediate and can be anticipated as the minimal substrate for thioester reduction by CARs. The determined crystal structure of the NcCAR R-domain reveals a tunnel that putatively harbors the phosphopantetheinylacyl-intermediate, which is in good agreement with docking experiments performed with the minimal substrate. In vitro studies were performed with this highly purified R-domain and NADPH, demonstrating carbonyl reduction activity. The R-domain was able to accept not only a simple aromatic ketone but also benzaldehyde and octanal, which are typically considered to be the final product of carboxylic acid reduction by CAR. Also, the full-length NcCAR reduced aldehydes to primary alcohols. In conclusion, aldehyde overreduction can no longer be attributed exclusively to the host background.
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Affiliation(s)
- Bastian Daniel
- acib
- Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria
- Institute
of Molecular Biosciences, University of
Graz, Humboldtstraße 50, 8010Graz, Austria
- BioTechMed-Graz, 8010Graz, Austria
| | - Chiam Hashem
- acib
- Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria
- Institute
of Molecular Biotechnology, Graz University
of Technology, Petersgasse 14, 8010Graz, Austria
| | - Marlene Leithold
- acib
- Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria
- Institute
of Molecular Biosciences, University of
Graz, Humboldtstraße 50, 8010Graz, Austria
| | - Theo Sagmeister
- Institute
of Molecular Biosciences, University of
Graz, Humboldtstraße 50, 8010Graz, Austria
| | - Adrian Tripp
- Institute
for Biochemistry, Graz University of Technology, Petersgasse 12, 8010Graz, Austria
| | | | - Julia Messenlehner
- Institute
for Biochemistry, Graz University of Technology, Petersgasse 12, 8010Graz, Austria
| | - Ronan Keegan
- Rutherford
Appleton Laboratory, Research Complex at Harwell, UKRI-STFC, DidcotOX11 0FA, United Kingdom
| | - Christoph K. Winkler
- Institute
of Chemistry, University of Graz, Heinrichstraße 28, 8010Graz, Austria
| | - Jonathan Guyang Ling
- Department
of Biological Sciences and Biotechnology, Universiti Kebangsaan Malaysia, 43600Bangi, SelangorMalaysia
| | - Sabry H.H. Younes
- Department
of Chemistry, Faculty of Science, Sohag
University, Sohag82524, Egypt
- Department
of Biotechnology, TU Delft, Van der Maasweg 9, 2629HZDelft, The
Netherlands
| | - Gustav Oberdorfer
- Institute
for Biochemistry, Graz University of Technology, Petersgasse 12, 8010Graz, Austria
| | - Farah Diba Abu Bakar
- Department
of Biological Sciences and Biotechnology, Universiti Kebangsaan Malaysia, 43600Bangi, SelangorMalaysia
| | - Karl Gruber
- acib
- Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria
- Institute
of Molecular Biosciences, University of
Graz, Humboldtstraße 50, 8010Graz, Austria
- BioHealth
Field of Excellence, University of Graz, 8010Graz, Austria
- BioTechMed-Graz, 8010Graz, Austria
| | - Tea Pavkov-Keller
- acib
- Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria
- Institute
of Molecular Biosciences, University of
Graz, Humboldtstraße 50, 8010Graz, Austria
- BioHealth
Field of Excellence, University of Graz, 8010Graz, Austria
- BioTechMed-Graz, 8010Graz, Austria
| | - Margit Winkler
- acib
- Austrian Center of Industrial Biotechnology, Krenngasse 37, 8010Graz, Austria
- Institute
of Molecular Biotechnology, Graz University
of Technology, Petersgasse 14, 8010Graz, Austria
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12
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Structural adaptation of thermostable carboxylic acid reductase from Mycobacterium phlei. MOLECULAR CATALYSIS 2022. [DOI: 10.1016/j.mcat.2022.112747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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13
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Basri RS, Rahman RNZRA, Kamarudin NHA, Latip W, Ali MSM. Characterization of Carboxylic Acid Reductase from Mycobacterium phlei Immobilized onto Seplite LX120. Polymers (Basel) 2022; 14:polym14204375. [PMID: 36297953 PMCID: PMC9609965 DOI: 10.3390/polym14204375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Revised: 10/02/2022] [Accepted: 10/03/2022] [Indexed: 11/16/2022] Open
Abstract
A multi-domain oxidoreductase, carboxylic acid reductase (CAR), can catalyze the one-step reduction of carboxylic acid to aldehyde. This study aimed to immobilize bacterial CAR from a moderate thermophile Mycobacterium phlei (MpCAR). It was the first work reported on immobilizing bacterial CAR onto a polymeric support, Seplite LX120, via simple adsorption. Immobilization time and protein load were optimized for MpCAR immobilization. The immobilized MpCAR showed optimal activity at 60 °C and pH 9. It was stable over a wide range of temperatures (10 to 100 °C) and pHs (4–11), retaining more than 50% of its activity. The immobilized MpCAR also showed stability in polar solvents. The adsorption of MpCAR onto the support was confirmed by Scanning Electron Microscopy (SEM), Fourier-Transform Infrared (FTIR) spectroscopy, and Brunauer–Emmett–Teller (BET) analysis. The immobilized MpCAR could be stored for up to 6 weeks at 4 °C and 3 weeks at 25 °C. Immobilized MpCAR showed great operational stability, as 59.68% of its activity was preserved after 10 assay cycles. The immobilized MpCAR could also convert approximately 2.6 mM of benzoic acid to benzaldehyde at 60 °C. The successfully immobilized MpCAR on Seplite LX120 exhibited improved properties that benefit green industrial processes.
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Affiliation(s)
- Rose Syuhada Basri
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Raja Noor Zaliha Raja Abd. Rahman
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Department of Microbiology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Nor Hafizah Ahmad Kamarudin
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Centre of Foundation Studies for Agricultural Science, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Wahhida Latip
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
| | - Mohd Shukuri Mohamad Ali
- Enzyme and Microbial Technology Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia
- Correspondence:
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14
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Kanter JP, Honold PJ, Lüke D, Heiles S, Spengler B, Fraatz MA, Harms C, Ley JP, Zorn H, Hammer AK. An enzymatic tandem reaction to produce odor-active fatty aldehydes. Appl Microbiol Biotechnol 2022; 106:6095-6107. [PMID: 36040487 PMCID: PMC9468042 DOI: 10.1007/s00253-022-12134-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 08/04/2022] [Accepted: 08/11/2022] [Indexed: 11/16/2022]
Abstract
Abstract Aldehydes represent a versatile and favored class of flavoring substances. A biocatalytic access to odor-active aldehydes was developed by conversion of fatty acids with two enzymes of the α-dioxygenase pathway. The recombinant enzymes α-dioxygenase (α-DOX) originating from Crocosphaera subtropica and fatty aldehyde dehydrogenase (FALDH) from Vibrio harveyi were heterologously expressed in E. coli, purified, and applied in a coupled (tandem) repetitive reaction. The concept was optimized in terms of number of reaction cycles and production yields. Up to five cycles and aldehyde yields of up to 26% were achieved. Afterward, the approach was applied to sea buckthorn pulp oil as raw material for the enzyme catalyzed production of flavoring/fragrance ingredients based on complex aldehyde mixtures. The most abundant fatty acids in sea buckthorn pulp oil, namely palmitic, palmitoleic, oleic, and linoleic acid, were used as substrates for further biotransformation experiments. Various aldehydes were identified, semi-quantified, and sensorially characterized by means of headspace–solid phase microextraction–gas chromatography–mass spectrometry–olfactometry (HS–SPME–GC–MS–O). Structural validation of unsaturated aldehydes in terms of double-bond positions was performed by multidimensional high-resolution mass spectrometry experiments of their Paternò–Büchi (PB) photoproducts. Retention indices and odor impressions of inter alia (Z,Z)-5,8-tetradecadienal (Z,Z)-6,9-pentadecadienal, (Z)-8-pentadecenal, (Z)-4-tridecenal, (Z)-6-pentadecenal, and (Z)-8-heptadecenal were determined for the first time. Key points • Coupled reaction of Csα-DOX and VhFALDH yields chain-shortened fatty aldehydes. • Odors of several Z-unsaturated fatty aldehydes are described for the first time. • Potential for industrial production of aldehyde-based odorants from natural sources. Graphical abstract ![]()
Supplementary Information The online version contains supplementary material available at 10.1007/s00253-022-12134-3.
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Affiliation(s)
- Jean-Philippe Kanter
- Institute of Food Chemistry and Food Biotechnology, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Philipp Jakob Honold
- Institute of Food Chemistry and Food Biotechnology, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - David Lüke
- Institute of Inorganic and Analytical Chemistry, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Sven Heiles
- Institute of Inorganic and Analytical Chemistry, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Bernhard Spengler
- Institute of Inorganic and Analytical Chemistry, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany
| | - Marco Alexander Fraatz
- Institute of Food Chemistry and Food Biotechnology, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany.,Fraunhofer Institute for Molecular Biology and Applied Ecology, Ohlebergsweg 12, 35394, Giessen, Germany
| | - Christoph Harms
- Symrise AG, Muehlenfeldstrasse 1, 37603, Holzminden, Germany
| | - Jakob Peter Ley
- Symrise AG, Muehlenfeldstrasse 1, 37603, Holzminden, Germany
| | - Holger Zorn
- Institute of Food Chemistry and Food Biotechnology, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany.,Fraunhofer Institute for Molecular Biology and Applied Ecology, Ohlebergsweg 12, 35394, Giessen, Germany
| | - Andreas Klaus Hammer
- Institute of Food Chemistry and Food Biotechnology, Justus Liebig University Giessen, Heinrich-Buff-Ring 17, 35392, Giessen, Germany. .,Fraunhofer Institute for Molecular Biology and Applied Ecology, Ohlebergsweg 12, 35394, Giessen, Germany.
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15
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Winkler M, Ling JG. Biocatalytic carboxylate reduction – recent advances and new enzymes. ChemCatChem 2022. [DOI: 10.1002/cctc.202200441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Margit Winkler
- Technische Universitat Graz Austrian Centre of Industrial Biotechnology Petersgasse 14 8010 Graz AUSTRIA
| | - Jonathan Guyang Ling
- Universiti Kebangsaan Malaysia Fakulti Sains dan Teknologi Department of Biological Sciences and Biotechnology 43600 Bangi MALAYSIA
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16
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Abstract
The use of CO2 as a chemical building block is of considerable interest. To achieve carbon fixation at ambient conditions, (de)carboxylase enzymes offer an attractive route but frequently require elevated [CO2] levels to yield the acid product. However, it has recently been shown that the coupling of a UbiD-type decarboxylase with carboxylic acid reductase yields the corresponding aldehyde product at near ambient [CO2]. Here, we show this approach can be expanded to different UbiD and CAR enzymes to yield alternative products, in this case, the production of pyrrole-2-carbaldehyde from pyrrole, using Pseudomonas aeruginosa HudA/PA0254 in combination with Segniliparus rotundus CAR. This confirms the varied substrate range of the respective UbiD and CAR enzymes can be harnessed in distinct combinations to support production of a wide range of aldehydes via enzymatic CO2 fixation.
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17
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Bayer T, Pfaff L, Branson Y, Becker A, Wu S, Bornscheuer UT, Wei R. Biosensor and chemo-enzymatic one-pot cascade applications to detect and transform PET-derived terephthalic acid in living cells. iScience 2022; 25:104326. [PMID: 35602945 PMCID: PMC9117539 DOI: 10.1016/j.isci.2022.104326] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 04/04/2022] [Accepted: 04/26/2022] [Indexed: 01/14/2023] Open
Abstract
Plastic waste imposes a serious problem to the environment and society. Hence, strategies for a circular plastic economy are demanded. One strategy is the engineering of polyester hydrolases toward higher activity for the biotechnological recycling of polyethylene terephthalate (PET). To provide tools for the rapid characterization of PET hydrolases and the detection of degradation products like terephthalic acid (TPA), we coupled a carboxylic acid reductase (CAR) and the luciferase LuxAB. CAR converted TPA into the corresponding aldehydes in Escherichia coli, which yielded bioluminescence that not only semiquantitatively reflected amounts of TPA in hydrolysis samples but is suitable as a high-throughput screening assay to assess PET hydrolase activity. Furthermore, the CAR-catalyzed synthesis of terephthalaldehyde was combined with a reductive amination cascade in a one-pot setup yielding the corresponding diamine, suggesting a new strategy for the transformation of TPA as a product obtained from PET biodegradation. First bioreduction of terephthalic acid (TPA) by a carboxylic acid reductase in vivo Real-time, high-throughput detection of TPA-derived aldehydes by luciferase LuxAB Bioluminescence reflects TPA amounts, assessing (engineered) PET hydrolase activity Transformation of TPA into the diamine through chemo-enzymatic one-pot cascade
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Affiliation(s)
- Thomas Bayer
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
- Institute of Molecular Biotechnology, TU Graz, Petersgasse 14, 8010 Graz, Austria
- Corresponding author
| | - Lara Pfaff
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
| | - Yannick Branson
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
| | - Aileen Becker
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
| | - Shuke Wu
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
- College of Life Science & Technology, Huazhong Agricultural University, Shizishan Street 1, Wuhan 430070, China
| | - Uwe T. Bornscheuer
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
| | - Ren Wei
- Institute of Biochemistry, Department of Biotechnology & Enzyme Catalysis, University of Greifswald, Felix-Hausdorff-Straße 4, 17487 Greifswald, Germany
- Corresponding author
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18
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Kim IJ, Bayer T, Terholsen H, Bornscheuer U. α-Dioxygenases (α-DOXs): Promising biocatalysts for the environmentally friendly production of aroma compounds. Chembiochem 2022; 23:e202100693. [PMID: 35107200 PMCID: PMC9305512 DOI: 10.1002/cbic.202100693] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 02/02/2022] [Indexed: 11/14/2022]
Abstract
Fatty aldehydes (FALs) can be derived from fatty acids (FAs) and related compounds and are frequently used as flavors and fragrances. Although chemical methods have been conventionally used, their selective biotechnological production aiming at more efficient and eco‐friendly synthetic routes is in demand. α‐Dioxygenases (α‐DOXs) are heme‐dependent oxidative enzymes biologically involved in the initial step of plant FA α‐oxidation during which molecular oxygen is incorporated into the Cα‐position of a FA (Cn) to generate the intermediate FA hydroperoxide, which is subsequently converted into the shortened corresponding FAL (Cn‐1). α‐DOXs are promising biocatalysts for the flavor and fragrance industries, they do not require NAD(P)H as cofactors or redox partner proteins, and they have a broad substrate scope. Here, we highlight recent advances in the biocatalytic utilization of α‐DOXs with emphasis on newly discovered cyanobacterial α‐DOXs as well as analytical methods to measure α‐DOX activity in vitro and in vivo.
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Affiliation(s)
- In Jung Kim
- University of Greifswald: Universitat Greifswald, Biotechnology & Enzyme Catalysis, GERMANY
| | - Thomas Bayer
- University of Greifswald: Universitat Greifswald, Biotechnology & Enzyme Catalysis, GERMANY
| | - Henrik Terholsen
- Universitat Greifswald, Biotechnology & Enzyme Catalysis, GERMANY
| | - Uwe Bornscheuer
- Greifswald University, Dept. of Biotechnology & Enzyme Catalysis, Felix-Hausdorff-Str. 4, 17487, Greifswald, GERMANY
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19
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Horvat M, Weilch V, Rädisch R, Hecko S, Schiefer A, Rudroff F, Wilding B, Klempier N, Pátek M, Martínková L, Winkler M. Chemoenzymatic one-pot reaction from carboxylic acid to nitrile via oxime. Catal Sci Technol 2022; 12:62-66. [PMID: 35126993 PMCID: PMC8725990 DOI: 10.1039/d1cy01694f] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Accepted: 11/28/2021] [Indexed: 12/23/2022]
Abstract
We report a new chemoenzymatic cascade starting with aldehyde synthesis by carboxylic acid reductase (CAR) followed by chemical in situ oxime formation. The final step to the nitrile is catalyzed by aldoxime dehydratase (Oxd). Full conversions of phenylacetic acid and hexanoic acid were achieved in a two-phase mode. We report a new chemoenzymatic cascade starting with aldehyde synthesis by carboxylic acid reductase (CAR) followed by chemical in situ oxime formation and enzymatic dehydration by aldoxime dehydratase (Oxd).![]()
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Affiliation(s)
- Melissa Horvat
- Institute of Molecular Biotechnology, Graz University of Technology Petersgasse 14 A-8010 Graz Austria
| | - Victoria Weilch
- Institute of Molecular Biotechnology, Graz University of Technology Petersgasse 14 A-8010 Graz Austria
| | - Robert Rädisch
- Institute of Microbiology of the Czech Academy of Sciences Vídeňská 1083 CZ-142 20 Prague Czech Republic .,Department of Genetics and Microbiology, Faculty of Science, Charles University Viničná 5 CZ-12844 Prague 2 Czech Republic
| | - Sebastian Hecko
- Institute of Applied Synthetic Chemistry, TU Wien Getreidemarkt 9/OC-163 A-1060 Vienna Austria
| | - Astrid Schiefer
- Institute of Applied Synthetic Chemistry, TU Wien Getreidemarkt 9/OC-163 A-1060 Vienna Austria
| | - Florian Rudroff
- Institute of Applied Synthetic Chemistry, TU Wien Getreidemarkt 9/OC-163 A-1060 Vienna Austria
| | - Birgit Wilding
- Acib GmbH Krenngasse 37 A-8010 Graz Austria.,Institute of Organic Chemistry, Graz University of Technology Stremayrgasse 9 A-8010 Graz Austria
| | - Norbert Klempier
- Institute of Organic Chemistry, Graz University of Technology Stremayrgasse 9 A-8010 Graz Austria
| | - Miroslav Pátek
- Institute of Microbiology of the Czech Academy of Sciences Vídeňská 1083 CZ-142 20 Prague Czech Republic
| | - Ludmila Martínková
- Institute of Microbiology of the Czech Academy of Sciences Vídeňská 1083 CZ-142 20 Prague Czech Republic
| | - Margit Winkler
- Institute of Molecular Biotechnology, Graz University of Technology Petersgasse 14 A-8010 Graz Austria .,Acib GmbH Krenngasse 37 A-8010 Graz Austria
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20
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Maphatsoe MM, Hashem C, Ling JG, Horvat M, Rumbold K, Bakar FDA, Winkler M. Characterization and Immobilization of Pycnoporus cinnabarinus Carboxylic Acid Reductase, PcCAR2. J Biotechnol 2021; 345:47-54. [PMID: 34954290 DOI: 10.1016/j.jbiotec.2021.12.010] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 12/14/2021] [Accepted: 12/20/2021] [Indexed: 10/19/2022]
Abstract
Carboxylic acid reductases (CARs) are well-known for their eminent selective one-step synthesis of carboxylic acids to aldehydes. To date, however, few CARs have been identified and characterized, especially from fungal sources. In this study, the CAR from the white rot fungus Pycnoporus cinnabarinus (PcCAR2) was expressed in Escherichia coli. PcCAR2's biochemical properties were explored in vitro after purification, revealing a melting temperature of 53°C, while the reaction temperature optimum was at 35°C. In the tested buffers, the enzyme showed a pH optimum of 6.0 and notably, a similar activity up to pH 7.5. PcCAR2 was immobilized to explore its potential as a recyclable biocatalyst. PcCAR2 showed no critical loss of activity after six cycles, with an average conversion to benzaldehyde of more than 85 percent per cycle. Immobilization yield and efficiency were 82% and 76%, respectively, on Ni-sepharose. Overall, our findings contribute to the characterization of a thermotolerant fungal CAR, and established a more sustainable use of the valuable biocatalyst.
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Affiliation(s)
- Masethabela Maria Maphatsoe
- Industrial Microbiology & Biotechnology Laboratory, School of Molecular and Cell Biology, University of the Witwatersrand, 2000 Johannesburg, South Africa
| | - Chiam Hashem
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
| | - Jonathan Guyang Ling
- Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Melissa Horvat
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
| | - Karl Rumbold
- Industrial Microbiology & Biotechnology Laboratory, School of Molecular and Cell Biology, University of the Witwatersrand, 2000 Johannesburg, South Africa
| | - Farah Diba Abu Bakar
- Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 Bangi, Selangor, Malaysia
| | - Margit Winkler
- Institute of Molecular Biotechnology, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria; Austrian Centre of Industrial Biotechnology (acib GmbH), Petersgasse 14, 8010 Graz, Austria.
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21
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Tavanti M, Hosford J, Lloyd RC, Brown MJB. Recent Developments and Challenges for the Industrial Implementation of Polyphosphate Kinases. ChemCatChem 2021. [DOI: 10.1002/cctc.202100688] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Michele Tavanti
- Synthetic Biochemistry Medicinal Science and Technology Pharma R&D GlaxoSmithKline Medicines Research Centre Gunnels Wood Road Stevenage SG12NY UK
- Early Chemical development Pharmaceutical Sciences, R&D AstraZeneca Astrazeneca PLC 1 Francis Crick Avenue Cambridge Biomedical Campus Cambridge CB20AA UK
| | - Joseph Hosford
- Synthetic Biochemistry Medicinal Science and Technology Pharma R&D GlaxoSmithKline Medicines Research Centre Gunnels Wood Road Stevenage SG12NY UK
| | - Richard C. Lloyd
- Chemical Development Medicinal Science and Technology Pharma R&D GlaxoSmithKline Medicines Research Centre Gunnels Wood Road Stevenage SG12NY UK
| | - Murray J. B. Brown
- Synthetic Biochemistry Medicinal Science and Technology Pharma R&D GlaxoSmithKline Medicines Research Centre Gunnels Wood Road Stevenage SG12NY UK
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22
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LuxAB-Based Microbial Cell Factories for the Sensing, Manufacturing and Transformation of Industrial Aldehydes. Catalysts 2021. [DOI: 10.3390/catal11080953] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
The application of genetically encoded biosensors enables the detection of small molecules in living cells and has facilitated the characterization of enzymes, their directed evolution and the engineering of (natural) metabolic pathways. In this work, the LuxAB biosensor system from Photorhabdus luminescens was implemented in Escherichia coli to monitor the enzymatic production of aldehydes from primary alcohols and carboxylic acid substrates. A simple high-throughput assay utilized the bacterial luciferase—previously reported to only accept aliphatic long-chain aldehydes—to detect structurally diverse aldehydes, including aromatic and monoterpene aldehydes. LuxAB was used to screen the substrate scopes of three prokaryotic oxidoreductases: an alcohol dehydrogenase (Pseudomonas putida), a choline oxidase variant (Arthrobacter chlorophenolicus) and a carboxylic acid reductase (Mycobacterium marinum). Consequently, high-value aldehydes such as cinnamaldehyde, citral and citronellal could be produced in vivo in up to 80% yield. Furthermore, the dual role of LuxAB as sensor and monooxygenase, emitting bioluminescence through the oxidation of aldehydes to the corresponding carboxylates, promises implementation in artificial enzyme cascades for the synthesis of carboxylic acids. These findings advance the bio-based detection, preparation and transformation of industrially important aldehydes in living cells.
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23
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Abstract
In this study, we present the synthesis of chiral fragrance aldehydes, which was tackled by a combination of chemo-catalysis and a multi-enzymatic in vivo cascade reaction and the development of a highly versatile high-throughput assay for the enzymatic reduction of carboxylic acids. We investigated a biocompatible metal-catalyzed synthesis for the preparation of α or β substituted cinnamic acid derivatives which were fed directly into the biocatalytic system. Subsequently, the target molecules were synthesized by an enzymatic cascade consisting of a carboxylate reduction, followed by the selective C-C double bond reduction catalyzed by appropriate enoate reductases. We investigated a biocompatible oxidative Heck protocol and combined it with cells expressing a carboxylic acid reductase from Neurospora crassa (NcCAR) and an ene reductase from Saccharomyces pastorianus for the production fragrance aldehydes.
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24
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Weber D, Patsch D, Neumann A, Winkler M, Rother D. Production of the Carboxylate Reductase from Nocardia otitidiscaviarum in a Soluble, Active Form for in vitro Applications. Chembiochem 2021; 22:1823-1832. [PMID: 33527702 PMCID: PMC8251736 DOI: 10.1002/cbic.202000846] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/28/2021] [Indexed: 01/22/2023]
Abstract
Accessing aldehydes from carboxylate moieties is often a challenging task. In this regard, carboxylate reductases (CARs) are promising catalysts provided by nature that are able to accomplish this task in just one step, avoiding over-reduction to the alcohol product. However, the heterologous expression of CARs can be quite difficult due to the excessive formation of insoluble protein, thus hindering further characterization and application of the enzyme. Here, the heterologous production of the carboxylate reductase from Nocardia otitidiscaviarum (NoCAR) was optimized by a combination of i) optimized cultivation conditions, ii) post-translational modification with a phosphopantetheinyl transferase and iii) selection of an appropriate expression strain. Especially, the selection of Escherichia coli tuner cells as host had a strong effect on the final 110-fold increase in the specific activity of NoCAR. This highly active NoCAR was used to reduce sodium benzoate to benzaldehyde, and it was successfully assembled with an in vitro regeneration of ATP and NADPH, being capable of reducing about 30 mM sodium benzoate with high selectivity in only 2 h of reaction.
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Affiliation(s)
- Douglas Weber
- Institute of Bio- and Geosciences (IBG-1)Biotechnology Forschungszentrum Jülich GmbHLeo-Brandt-Str. 152425JülichGermany
- Aachen Biology and Biotechnology (ABBt)RWTH Aachen UniversityWorringer Weg 152074AachenGermany
| | - David Patsch
- Institute of Bio- and Geosciences (IBG-1)Biotechnology Forschungszentrum Jülich GmbHLeo-Brandt-Str. 152425JülichGermany
| | - Annika Neumann
- Institute of Bio- and Geosciences (IBG-1)Biotechnology Forschungszentrum Jülich GmbHLeo-Brandt-Str. 152425JülichGermany
| | - Margit Winkler
- acib-Austrian Centre of Industrial BiotechnologyPetersgasse148010GrazAustria
- Institute of MolecularBiotechnology, Graz University of TechnologyPetersgasse148010GrazAustria
| | - Dörte Rother
- Institute of Bio- and Geosciences (IBG-1)Biotechnology Forschungszentrum Jülich GmbHLeo-Brandt-Str. 152425JülichGermany
- Aachen Biology and Biotechnology (ABBt)RWTH Aachen UniversityWorringer Weg 152074AachenGermany
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25
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Production of Aldehydes by Biocatalysis. Int J Mol Sci 2021; 22:ijms22094949. [PMID: 34066641 PMCID: PMC8124467 DOI: 10.3390/ijms22094949] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Revised: 04/29/2021] [Accepted: 04/30/2021] [Indexed: 02/07/2023] Open
Abstract
The production of aldehydes, highly reactive and toxic chemicals, brings specific challenges to biocatalytic processes. Absence of natural accumulation of aldehydes in microorganisms has led to a combination of in vitro and in vivo strategies for both, bulk and fine production. Advances in genetic and metabolic engineering and implementation of computational techniques led to the production of various enzymes with special requirements. Cofactor synthesis, post-translational modifications and structure engineering are applied to prepare active enzymes for one-step or cascade reactions. This review presents the highlights in biocatalytical production of aldehydes with the potential to shape future industrial applications.
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26
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Schwarz A, Hecko S, Rudroff F, Kohrt JT, Howard RM, Winkler M. Cell-free in vitro reduction of carboxylates to aldehydes: With crude enzyme preparations to a key pharmaceutical building block. Biotechnol J 2021; 16:e2000315. [PMID: 33245607 DOI: 10.1002/biot.202000315] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Revised: 11/03/2020] [Indexed: 11/07/2022]
Abstract
The scarcity of practical methods for aldehyde synthesis in chemistry necessitates the development of mild, selective procedures. Carboxylic acid reductases catalyze aldehyde formation from stable carboxylic acid precursors in an aqueous solution. Carboxylic acid reductases were employed to catalyze aldehyde formation in a cell-free system with activation energy and reducing equivalents provided through auxiliary proteins for ATP and NADPH recycling. In situ product removal was used to suppress over-reduction due to background enzyme activities, and an N-protected 4-formyl-piperidine pharma synthon was prepared in 61% isolated yield. This is the first report of preparative aldehyde synthesis with carboxylic acid reductases employing crude, commercially available enzyme preparations.
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Affiliation(s)
- Anna Schwarz
- Austrian Center of Industrial Biotechnology, Area Biotransformation, Graz, Austria
| | - Sebastian Hecko
- Institute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria
| | - Florian Rudroff
- Institute of Applied Synthetic Chemistry, TU Wien, Vienna, Austria
| | - Jeffrey T Kohrt
- Pfizer Worldwide Research and Development, Applied Synthesis Technologies - Biocatalysis, Groton, USA
| | - Roger M Howard
- Pfizer Worldwide Research and Development, Applied Synthesis Technologies - Biocatalysis, Groton, USA
| | - Margit Winkler
- Austrian Center of Industrial Biotechnology, Area Biotransformation, Graz, Austria.,Institute of Molecular Biotechnology, Graz University of Technology, Graz, Austria
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