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Olshansky JH, Zhang J, Krzyaniak MD, Lorenzo ER, Wasielewski MR. Selectively Addressable Photogenerated Spin Qubit Pairs in DNA Hairpins. J Am Chem Soc 2020; 142:3346-3350. [PMID: 32009396 DOI: 10.1021/jacs.9b13398] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Photoinduced electron transfer can produce radical pairs having two quantum entangled electron spins that can act as spin qubits in quantum information applications. Manipulation of these spin qubits requires selective addressing of each spin using microwave pulses. In this work, photogenerated spin qubit pairs are prepared within chromophore-modified DNA hairpins with varying spin qubit distances, and are probed using transient EPR spectroscopy. By performing pulse-EPR measurements on the shortest hairpin, selective addressing of each spin qubit comprising the pair is demonstrated. Furthermore, these spin qubit pairs have coherence times of more than 4 μs, which provides a comfortable time window for performing complex spin manipulations for quantum information applications. The applicability of these DNA-based photogenerated two-qubit systems is discussed in the context of quantum gate operations, specifically the controlled-NOT gate.
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Affiliation(s)
- Jacob H Olshansky
- Department of Chemistry and Institute for Sustainability and Energy at Northwestern , Northwestern University , Evanston Illinois 60208-3113 , United States
| | - Jinyuan Zhang
- Department of Chemistry and Institute for Sustainability and Energy at Northwestern , Northwestern University , Evanston Illinois 60208-3113 , United States
| | - Matthew D Krzyaniak
- Department of Chemistry and Institute for Sustainability and Energy at Northwestern , Northwestern University , Evanston Illinois 60208-3113 , United States
| | - Emmaline R Lorenzo
- Department of Chemistry and Institute for Sustainability and Energy at Northwestern , Northwestern University , Evanston Illinois 60208-3113 , United States
| | - Michael R Wasielewski
- Department of Chemistry and Institute for Sustainability and Energy at Northwestern , Northwestern University , Evanston Illinois 60208-3113 , United States
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2
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Synthesis, Characterization, and Self-Assembly of a Tetrathiafulvalene (TTF)–Triglycyl Derivative. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8050671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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3
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Li GN, Liao Y, Jin T, Li YZ. Crystal structures and properties of the tetrathiafulvalene substituted bispyrazol ligand and its rhenium(I) tricarbonyl complex. INORG CHEM COMMUN 2013. [DOI: 10.1016/j.inoche.2013.05.022] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Affiliation(s)
- Yin Nah Teo
- Department of Chemistry, Stanford University, California 94305, United States
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Pérez-Rentero S, Gállego I, Somoza Á, Ferreira R, Janoušek J, Bělohradský M, Stará IG, Starý I, Eritja R. Interstrand interactions on DNA duplexes modified by TTF units at the 3′ or 5′-ends. RSC Adv 2012. [DOI: 10.1039/c2ra20477k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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7
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Keller S, Yi C, Li C, Liu SX, Blum C, Frei G, Sereda O, Neels A, Wandlowski T, Decurtins S. Synthesis, structures, redox and photophysical properties of benzodifuran-functionalised pyrene and anthracene fluorophores. Org Biomol Chem 2011; 9:6410-6. [PMID: 21789329 DOI: 10.1039/c1ob05778b] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Benzodifuran-functionalised pyrene and anthracene fluorophores 1 and 2 were obtained in reasonable yields. Their single crystal structures, electrochemical, optical absorption, and fluorescence characteristics have been described. They show strong luminescence with high quantum yields of 0.53 for 1 and 0.48 for 2.
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Affiliation(s)
- Stephan Keller
- Departement für Chemie und Biochemie, Universität Bern, Bern, Switzerland
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8
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Wenger D, Malinovskii VL, Häner R. Modulation of chiroptical properties by DNA-guided assembly of fluorenes. Chem Commun (Camb) 2011; 47:3168-70. [PMID: 21283836 DOI: 10.1039/c0cc05125j] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The supramolecular organization of fluorene building blocks in a DNA scaffold is described. The molecular assembly into ordered π-aggregates leads to distinct changes in the electronic properties.
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Affiliation(s)
- Daniel Wenger
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
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9
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Bandy TJ, Brewer A, Burns JR, Marth G, Nguyen T, Stulz E. DNA as supramolecular scaffold for functional molecules: progress in DNA nanotechnology. Chem Soc Rev 2010; 40:138-48. [PMID: 20694258 DOI: 10.1039/b820255a] [Citation(s) in RCA: 197] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Oligonucleotides have recently gained increased attraction as a supramolecular scaffold for the design and synthesis of functional molecules on the nanometre scale. This tutorial review focuses on the recent progress in this highly active field of research with an emphasis on covalent modifications of DNA; non-covalent interactions of DNA with molecules such as groove binders or intercalators are not part of this review. Both terminal and internal modifications are covered, and the various points of attachment (nucleobase, sugar moiety or phosphodiester backbone) are compared. Using selected examples of the recent literature, the diversity of the functionalities that have been incorporated into DNA strands is discussed.
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Affiliation(s)
- Thomas J Bandy
- University of Southampton, School of Chemistry, Highfield, Southampton SO17 1BJ, UK
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Häner R, Garo F, Wenger D, Malinovskii VL. Oligopyrenotides: Abiotic, Polyanionic Oligomers with Nucleic Acid-like Structural Properties. J Am Chem Soc 2010; 132:7466-71. [DOI: 10.1021/ja102042p] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Robert Häner
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
| | - Florian Garo
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
| | - Daniel Wenger
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
| | - Vladimir L. Malinovskii
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
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Schwartz E, Le Gac S, Cornelissen JJLM, Nolte RJM, Rowan AE. Macromolecular multi-chromophoric scaffolding. Chem Soc Rev 2010; 39:1576-99. [DOI: 10.1039/b922160c] [Citation(s) in RCA: 107] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Malinovskii VL, Wenger D, Häner R. Nucleic acid-guided assembly of aromatic chromophores. Chem Soc Rev 2009; 39:410-22. [PMID: 20111767 DOI: 10.1039/b910030j] [Citation(s) in RCA: 225] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The rational formation of aromatic chromophore arrays is an intriguing challenge since ordered collectives of chromophores possess properties that are largely different from those of the individual molecules. Therefore, nucleic acids are increasingly used as scaffolds for the construction of multi-chromophore arrays. This tutorial review provides an introduction to the field of nucleic acid-guided chromophore assemblies for non-specialists and a reference point for those familiar with the area by highlighting the recent developments and describing some of the spectroscopic methods used for the study of oligonucleotide-chromophore conjugates.
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Affiliation(s)
- Vladimir L Malinovskii
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, CH-3012 Bern, Switzerland
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Schnippering M, Zahn A, Liu SX, Leumann C, Decurtins S, Fermín DJ. Synthesis and electrochemical properties of TTF modified oligodeoxynucleotides. Chem Commun (Camb) 2009:5552-4. [PMID: 19753354 DOI: 10.1039/b907847a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new approach for labelling oligodeoxynucleotides with tetrathiafulvalene (TTF) units is presented, generating single and double strand structures with distinctive electrochemical signatures.
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Affiliation(s)
- Mathias Schnippering
- Department of Chemistry, University of Warwick, Gibbet Hill Road, Coventry, UK CV4 7AL
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Abstract
The self-organization of oligopyrene foldamers is described. Bi- and tri-segmental oligomers composed of nucleotides and non-nucleosidic, achiral pyrene monomers form double-stranded helical structures, as shown by absorbance, fluorescence, and CD spectroscopy. The mixed nature of alternating aromatic and phosphate groups ensures water solubility which, in turn, favors folding of the aromatic units. Pyrene molecules also assemble though interstrand stacking interactions. Structural organization of the pyrene units is an intrinsic property of the oligoaryl part and takes place independently from the sequence of the attached DNA. Chirality transfer from DNA to the pyrene segment leads to formation of a double helix, in which neighboring pyrene units are, in the present case, twisted in a right-handed manner. Pyrene helicity is most pronounced in a bi-segmental chimera, in which a DNA stem is present only at one end of the pyrene section.
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Affiliation(s)
- Robert Häner
- Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland.
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Riedl J, Horáková P, Šebest P, Pohl R, Havran L, Fojta M, Hocek M. Tetrathiafulvalene-Labelled Nucleosides and Nucleoside Triphosphates: Synthesis, Electrochemistry and the Scope of Their Polymerase Incorporation into DNA. European J Org Chem 2009. [DOI: 10.1002/ejoc.200900392] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Nguyen T, Brewer A, Stulz E. Duplex Stabilization and Energy Transfer in Zipper Porphyrin-DNA. Angew Chem Int Ed Engl 2009; 48:1974-7. [DOI: 10.1002/anie.200805657] [Citation(s) in RCA: 95] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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17
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Nguyen T, Brewer A, Stulz E. Duplex Stabilization and Energy Transfer in Zipper Porphyrin-DNA. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200805657] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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18
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Liu W, Xiong J, Wang Y, Zhou XH, Wang R, Zuo JL, You XZ. Syntheses, Structures, and Properties of Tricarbonyl (Chloro) Rhenium(I) Complexes with Redox-Active Tetrathiafulvalene−Pyrazole Ligands. Organometallics 2009. [DOI: 10.1021/om800919u] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Wei Liu
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Jing Xiong
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Yong Wang
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Xin-Hui Zhou
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Ru Wang
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Jing-Lin Zuo
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Xiao-Zeng You
- State Key Laboratory of Coordination Chemistry, Nanjing National Laboratory of Microstructures, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, P. R. China, and Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
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Canevet D, Sallé M, Zhang G, Zhang D, Zhu D. Tetrathiafulvalene (TTF) derivatives: key building-blocks for switchable processes. Chem Commun (Camb) 2009:2245-69. [PMID: 19377656 DOI: 10.1039/b818607n] [Citation(s) in RCA: 418] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- David Canevet
- Université d'Angers, CIMA UMR CNRS 6200-UFR Sciences, 2 boulevard Lavoisier, 49045 Angers, France
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20
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Goze C, Dupont N, Beitler E, Leiggener C, Jia H, Monbaron P, Liu SX, Neels A, Hauser A, Decurtins S. Ruthenium(II) Coordination Chemistry of a Fused Donor−Acceptor Ligand: Synthesis, Characterization, and Photoinduced Electron-Transfer Reactions of [{Ru(bpy)2}n(TTF-ppb)](PF6)2n (n = 1, 2). Inorg Chem 2008; 47:11010-7. [PMID: 18950153 DOI: 10.1021/ic801252t] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Christine Goze
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Nathalie Dupont
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Elvira Beitler
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Claudia Leiggener
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Hongpeng Jia
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Philippe Monbaron
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Shi-Xia Liu
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Antonia Neels
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Andreas Hauser
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
| | - Silvio Decurtins
- Departement für Chemie und Biochemie, Universität Bern, Freiestrasse 3, CH-3012 Bern, Switzerland, Département de Chimie Physique, Université de Genève, 30 Quai Ernest-Ansermet, CH-1211 Genève 4, Switzerland, and XRD Application LAB, CSEM Centre Suisse d′Electronique et de Microtechnique SA, Jaquet-Droz 1, Case postale, CH-2002 Neuchâtel, Switzerland
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