Group 12 Dihalides: Structural Predilections from Gases to Solids

London Dispersion Interactions Imitate Pressure for Molecular Crystals

The packing of molecular crystals, in which the constituent molecular units have no directional forces, is primarily controlled by weak London dispersion (LD) forces. These forces assist in stabilizing the system by bringing the molecular units into the proximity of each other. In this paper, the same effect is shown to be externally induced by pressure. The minimal pressure required to correctly describe the crystal structure without LD interactions (P_LD) provides a quantifiable measure for the weak intermolecular interactions. LD forces are shown to be essential for an accurate description of the pressure-induced phase transitions across examples of linear, trigonal-planar, square-planar, tetrahedral, trigonal bipyramidal, and octahedral molecules.

From Molecules to Solids: A vdW-DF-C09 Case Study of the Mercury Dihalides

The mercury dihalides show a remarkable diversity in the structural preferences in their minimum energy structure types, spanning molecular to strongly bound ionic solids. A challenge in the development of density functional methods for extended systems is to arrive at strategies that serve equally well such a broad range of bonding modes or structural preferences. The chemical bonding and the stabilities of mercury dihalides and the general utility and reliability of the van der Waals density functional with C09 exchange (vdW-DF-C09) in predicting or describing the energetics and structural preferences in these metal dihalides is examined. We show that, in contrast with the uncorrected generalized gradient approximation of the Perdew-Burke-Erzenhoff (PBE) exchange-correlation functional, qualitative and quantitative patterns in the bonding of the mercury dihalide solids are well reproduced with vdW-DF-C09 for the full series of HgX₂ systems for X = F, Cl, Br, and I. The possible existence of a low-temperature cotunnite polymorph for HgF₂ and PbF₂ is posited.

Mercurophilic interactions: a theoretical study on the importance of ligands

A combined structural and theoretical analysis allowed us to determine the factors that favor the establishment of short Hg(ii)⋯Hg(ii) contacts based on metallophilic attraction.

Role of Lewis acid additives in a palladium catalyzed directed C-H functionalization reaction of benzohydroxamic acid to isoxazolone

Metallic salts as well as protic additives are widely employed in transition metal catalyzed C-H bond functionalization reactions to improve the efficiency of catalytic protocols. In one such example, ZnCl₂ and pivalic acid are used as additives in a palladium catalyzed synthesis of isoxazolone from a readily available benzohydroxamic acid under one pot conditions. In this article, we present some important mechanistic insights into the role of ZnCl₂ and pivalic acid, gained by using density functional theory (M06) computations. Two interesting modes of action of ZnCl₂ are identified in various catalytic steps involved in the formation of isoxazolone. The conventional Lewis acid coordination wherein zinc chloride (ZnCl₂·(DMA)) binds to the carbonyl group is found to be more favored in the C-H activation step. However, the participation of a hetero-bimetallic Pd-Zn species is preferred in reductive elimination leading to C_aryl-N bond formation. Pivalic acid helps in relay proton transfer in C-H bond activation through a cyclometallation deprotonation (CMD) process. The explicit inclusion of ZnCl₂ and solvent N,N-dimethyl acetamide (DMA) stabilizes the transition state and also helps reduce the activation barrier for the C-H bond activation step. The electronic communication between the two metal species is playing a crucial role in stabilizing the C_aryl-N bond formation transition state through a Pd-Zn hetero-bimetallic interaction.

X-ray structure of a Hg2+ complex of mercuric reductase (MerA) and quantum mechanical/molecular mechanical study of Hg2+ transfer between the C-terminal and buried catalytic site cysteine pairs

Mercuric reductase, MerA, is a key enzyme in bacterial mercury resistance. This homodimeric enzyme captures and reduces toxic Hg²⁺ to Hg⁰, which is relatively unreactive and can exit the cell passively. Prior to reduction, the Hg²⁺ is transferred from a pair of cysteines (C558′ and C559′ using Tn501 numbering) at the C-terminus of one monomer to another pair of cysteines (C136 and C141) in the catalytic site of the other monomer. Here, we present the X-ray structure of the C-terminal Hg²⁺ complex of the C136A/C141A double mutant of the Tn501 MerA catalytic core and explore the molecular mechanism of this Hg transfer with quantum mechanical/molecular mechanical (QM/MM) calculations. The transfer is found to be nearly thermoneutral and to pass through a stable tricoordinated intermediate that is marginally less stable than the two end states. For the overall process, Hg²⁺ is always paired with at least two thiolates and thus is present at both the C-terminal and catalytic binding sites as a neutral complex. Prior to Hg²⁺ transfer, C141 is negatively charged. As Hg²⁺ is transferred into the catalytic site, a proton is transferred from C136 to C559′ while C558′ becomes negatively charged, resulting in the net transfer of a negative charge over a distance of ∼7.5 Å. Thus, the transport of this soft divalent cation is made energetically feasible by pairing a competition between multiple Cys thiols and/or thiolates for Hg²⁺ with a competition between the Hg²⁺ and protons for the thiolates.

Aqueous microsolvation of CdCl₂: density functional theory and Born-Oppenheimer molecular dynamics studies

We report a systematic study of aqueous microsolvation of CdCl2. The optimized structures and binding energies of the CdCl2-(H2O)n clusters with n = 1-24 have been computed at the B3PW91/6-31G** level. The solvation patterns obtained at the DFT level are verified at the MP2/AVTZ level for n < 6. Unlike HgCl2-(H2O)n case, where there are at most three Hg-O(w) orbital interactions, Cd also establishes four equatorial orbital interactions with water for n > 6 leading to a planar square bipyramid hexacoordination around Cd. The first solvation shell is fully attained with 12 water molecules. At the same level of theory the water binding energies are much larger than those previously found for HgCl2 due to the stronger Cd-O(w) interactions arising from the smaller core of Cd. For the largest system studied, CdCl2-(H2O)24, both penta- and hexa-coordination stable patterns around Cd are found. However, Born-Opphenheimer molecular dynamics simulations starting from these optimized geometries at 700 K reveal the greater stability of the Cd-pentacoordinated species, where a CdCl2-(H2O)3 trigonal bipyramid effective solute appears. The Cd-O(water) radial distribution function shows a bimodal distribution with two maxima at 2.4 Å and 4.2 Å, revealing the different coordination spheres, even with such a small number of solvating water molecules.

Method and Basis Set Analysis of Oxorhenium(V) Complexes for Theoretical Calculations

A variety of method and basis set combinations has been evaluated for monooxorhenium(V) complexes with N, O, P, S, Cl, and Se donor atoms. The geometries and energies obtained are compared to both high-level computations and literature structures. These calculations show that the PBE0 method outperforms the B3LYP method with respect to both structure and energetics. The combination of 6-31G** basis set on the nonmetal atoms and LANL2TZ effective core potential on the rhenium center gives reliable equilibrium structures with minimal computational resources for both model and literature compounds. Single-point energy calculations at the PBE0/LANL2TZ,6-311+G* level of theory are recommended for energetics.

The coordination behaviour of ferrocene-based pyridylphosphine ligands towards Zn(II), Cd(II) and Hg(II)

The reaction of Group 12 metal dihalides MX(2) with the P,N-ligands [Fe(C(5)H(4)-PPh(2))(C(5)H(4)-2-py)] (1) (2-py = pyrid-2-yl), [Fe(C(5)H(4)-PPh(2))(C(5)H(4)-CH(2)-2-py)] (2) and [Fe(C(5)H(4)-PPh(2))(C(5)H(4)-3-py)] (3) (3-py = pyrid-3-yl) was investigated. For a 1 : 1 molar ratio of MX(2) and the respective ligand, three structure types were found in the solid state, viz. chelate, cyclic dimer and chain-like coordination polymer. The M(II) coordination environment is distorted pseudo-tetrahedral in each case. The P-M-N angle is much larger in the chelates (≥119°) than in the ligand-bridged structures (≤109°). 1 prefers the formation of chelates [MX(2)(1-κ(2)N,P)]. 3 forms coordination polymers [MX(2)(μ-3)](n). With the more flexible 2 all three structure types can occur. Dynamic coordination equilibria were observed in solution for the molecular complexes obtained with 1 and 2. NMR data indicate that the N- and P-donor sites interact most strongly with Zn(II) and Hg(II), respectively. While the formation of bis(phosphine)mercury complexes (soft-soft) was easily achieved, no bis(pyridine)zinc complex (borderline-borderline) could be obtained, which is surprising in view of the HSAB principle.

Structural effects in molecular metal halides

Metal halides are a relatively large class of inorganic compounds that participate in many industrial processes, from halogen metallurgy to the production of semiconductors. Because most metal halides are ionic crystals at ambient conditions, the term "molecular metal halides" usually refers to vapor-phase species. These gas-phase molecules have a special place in basic research because they exhibit the widest range of chemical bonding from the purely ionic to mostly covalent bonding through to weakly interacting systems. Although our focus is basic research, knowledge of the structural and thermodynamic properties of gas-phase metal halides is also important in industrial processes. In this Account, we review our most recent work on metal halide molecular structures. Our studies are based on electron diffraction and vibrational spectroscopy, and increasingly, we have augmented our experimental work with quantum chemical computations. Using both experimental and computational techniques has enabled us to determine intriguing structural effects with better accuracy than using either technique alone. We loosely group our discussion based on structural effects including "floppiness", relativistic effects, vibronic interactions, and finally, undiscovered molecules with computational thermodynamic stability. Floppiness, or serious "nonrigidity", is a typical characteristic of metal halides and makes their study challenging for both experimentalists and theoreticians. Relativistic effects are mostly responsible for the unique structure of gold and mercury halides. These molecules have shorter-than-expected bonds and often have unusual geometrical configurations. The gold monohalide and mercury dihalide dimers and the molecular-type crystal structure of HgCl(2) are examples. We also examined spin-orbit coupling and the possible effect of the 4f electrons on the structure of lanthanide trihalides. Unexpectedly, we found that the geometry of their dimers depends on the f electron configuration. Metal halides are unique in exhibiting strong vibronic interactions such as the Jahn-Teller effect and the related Renner-Teller effect. Some metal trihalide molecules have an almost T-shape due to static Jahn-Teller distortions. The nonlinear structure with a 150 degree bond angle of the chromium dichloride molecule demonstrates the Renner-Teller effect. Finally, we present a few examples of unknown structures that appear to be thermodynamically stable, including gold and silver triiodides and all silver subhalides. The combination of experimental and computational techniques has brought new insights to the structural chemistry of metal halides. We expect that the continuing progress in computational chemistry will shed further light on the intricate details of these and other molecular structures.