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Sapra R, Verma RP, Maurya GP, Dhawan S, Babu J, Haridas V. Designer Peptide and Protein Dendrimers: A Cross-Sectional Analysis. Chem Rev 2019; 119:11391-11441. [PMID: 31556597 DOI: 10.1021/acs.chemrev.9b00153] [Citation(s) in RCA: 72] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Dendrimers have attracted immense interest in science and technology due to their unique chemical structure that offers a myriad of opportunities for researchers. Dendritic design allows us to present peptides in a branched three-dimensional fashion that eventually leads to a globular shape, thus mimicking globular proteins. Peptide dendrimers, unlike other classes of dendrimers, have immense applications in biomedical research due to their biological origin. The diversity of potential building blocks and innumerable possibilities for design, along with the fact that the area is relatively underexplored, make peptide dendrimers sought-after candidates for various applications. This review summarizes the stepwise evolution of peptidic dendrimers along with their multifaceted applications in various fields. Further, the introduction of biomacromolecules such as proteins to a dendritic scaffold, resulting in complex macromolecules with discrete molecular weights, is an altogether new addition to the area of organic chemistry. The synthesis of highly complex and fully folded biomacromolecules on a dendritic scaffold requires expertise in synthetic organic chemistry and biology. Presently, there are only a handful of examples of protein dendrimers; we believe that these limited examples will fuel further research in this area.
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Affiliation(s)
- Rachit Sapra
- Department of Chemistry , Indian Institute of Technology Delhi , Hauz Khas , New Delhi 110016 , India
| | - Ram P Verma
- Department of Chemistry , Indian Institute of Technology Delhi , Hauz Khas , New Delhi 110016 , India
| | - Govind P Maurya
- Department of Chemistry , Indian Institute of Technology Delhi , Hauz Khas , New Delhi 110016 , India
| | - Sameer Dhawan
- Department of Chemistry , Indian Institute of Technology Delhi , Hauz Khas , New Delhi 110016 , India
| | - Jisha Babu
- Department of Chemistry , Indian Institute of Technology Delhi , Hauz Khas , New Delhi 110016 , India
| | - V Haridas
- Department of Chemistry , Indian Institute of Technology Delhi , Hauz Khas , New Delhi 110016 , India
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2
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Miao L, Fan Q, Zhao L, Qiao Q, Zhang X, Hou C, Xu J, Luo Q, Liu J. The construction of functional protein nanotubes by small molecule-induced self-assembly of cricoid proteins. Chem Commun (Camb) 2016; 52:4092-5. [DOI: 10.1039/c6cc00632a] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Induced by small molecular ethylenediamine and “zero-length” covalent crosslinking, covalently crosslinked SeSP1 protein nanotubes with great GPx activity was fabricated.
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Affiliation(s)
- Lu Miao
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
| | - Qiusheng Fan
- School of Life Sciences
- Jilin University
- Changchun 130012
- China
| | - Linlu Zhao
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
| | - Qinglong Qiao
- Key Laboratory of Separation Science for Analytical Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian 116023
- China
| | - Xiyu Zhang
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
| | - Chunxi Hou
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
| | - Jiayun Xu
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
| | - Quan Luo
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
| | - Junqiu Liu
- State Key Laboratory of Supramolecular Structure and Materials
- College of Chemistry
- Jilin University
- Changchun 130012
- China
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3
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Weidmann J, Dimitrijević E, Hoheisel JD, Dawson PE. Boc-SPPS: Compatible Linker for the Synthesis of Peptide o-Aminoanilides. Org Lett 2015; 18:164-7. [DOI: 10.1021/acs.orglett.5b03111] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joachim Weidmann
- Division
of Functional Genome Analysis, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany
- Departments of Chemistry and Cell & Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States
| | - Elena Dimitrijević
- Departments of Chemistry and Cell & Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States
| | - Jörg D. Hoheisel
- Division
of Functional Genome Analysis, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 580, 69120 Heidelberg, Germany
| | - Philip E. Dawson
- Departments of Chemistry and Cell & Molecular Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States
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Hou C, Li J, Zhao L, Zhang W, Luo Q, Dong Z, Xu J, Liu J. Construction of Protein Nanowires through Cucurbit[8]uril-based Highly Specific Host-Guest Interactions: An Approach to the Assembly of Functional Proteins. Angew Chem Int Ed Engl 2013; 52:5590-3. [DOI: 10.1002/anie.201300692] [Citation(s) in RCA: 128] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2013] [Revised: 03/11/2013] [Indexed: 11/07/2022]
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5
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Hou C, Li J, Zhao L, Zhang W, Luo Q, Dong Z, Xu J, Liu J. Construction of Protein Nanowires through Cucurbit[8]uril-based Highly Specific Host-Guest Interactions: An Approach to the Assembly of Functional Proteins. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201300692] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Rich RL, Myszka DG. Survey of the 2009 commercial optical biosensor literature. J Mol Recognit 2012; 24:892-914. [PMID: 22038797 DOI: 10.1002/jmr.1138] [Citation(s) in RCA: 83] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We took a different approach to reviewing the commercial biosensor literature this year by inviting 22 biosensor users to serve as a review committee. They set the criteria for what to expect in a publication and ultimately decided to use a pass/fail system for selecting which papers to include in this year's reference list. Of the 1514 publications in 2009 that reported using commercially available optical biosensor technology, only 20% passed their cutoff. The most common criticism the reviewers had with the literature was that "the biosensor experiments could have been done better." They selected 10 papers to highlight good experimental technique, data presentation, and unique applications of the technology. This communal review process was educational for everyone involved and one we will not soon forget.
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Affiliation(s)
- Rebecca L Rich
- Center for Biomolecular Interaction Analysis, University of Utah, Salt Lake City, UT, USA
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7
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Appel WPJ, Meijer EW, Dankers PYW. Enzymatic Activity at the Surface of Biomaterials via Supramolecular Anchoring of Peptides: The Effect of Material Processing. Macromol Biosci 2011; 11:1706-12. [DOI: 10.1002/mabi.201100225] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2011] [Revised: 07/25/2011] [Indexed: 12/15/2022]
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8
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Gaertner HF, Cerini F, Kamath A, Rochat AF, Siegrist CA, Menin L, Hartley O. Efficient Orthogonal Bioconjugation of Dendrimers for Synthesis of Bioactive Nanoparticles. Bioconjug Chem 2011; 22:1103-14. [DOI: 10.1021/bc1005653] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hubert F. Gaertner
- Department of Structural Biology and Bioinformatics, Faculty of Medicine
| | - Fabrice Cerini
- Department of Structural Biology and Bioinformatics, Faculty of Medicine
| | - Arun Kamath
- Departments of Pathology-Immunology and Pediatrics
| | | | | | - Laure Menin
- Service de Spectrométrie de Masse de l'ISIC (SSMI), EPFL, Bât. Chimie (BCH 1524), CH-1015 Lausanne, Switzerland
| | - Oliver Hartley
- Department of Structural Biology and Bioinformatics, Faculty of Medicine
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9
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Collagen targeting using multivalent protein-functionalized dendrimers. Bioorg Med Chem 2011; 19:1062-71. [DOI: 10.1016/j.bmc.2010.07.058] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2010] [Revised: 07/08/2010] [Accepted: 07/26/2010] [Indexed: 12/22/2022]
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10
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Hernández-Rocamora VM, Reulen SWA, de Waal B, Meijer EW, Sanz JM, Merkx M. Choline dendrimers as generic scaffolds for the non-covalent synthesis of multivalent protein assemblies. Chem Commun (Camb) 2011; 47:5997-9. [DOI: 10.1039/c0cc05605g] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Müller MK, Petkau K, Brunsveld L. Proteinassembly along a supramolecular wire. Chem Commun (Camb) 2011; 47:310-2. [DOI: 10.1039/c0cc02084b] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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12
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Lempens EHM, Helms BA, Merkx M. Chemoselective protein and peptide immobilization on biosensor surfaces. Methods Mol Biol 2011; 751:401-420. [PMID: 21674345 DOI: 10.1007/978-1-61779-151-2_25] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Site-specific immobilization of proteins and peptides on a sensor surface represents a significant challenge for bioanalytical applications such as surface plasmon resonance (SPR). The most common protocols for covalent protein immobilization usually result in heterogeneous presentation of the ligand at the surface, which can in some instances yield conflicting results with analogous data obtained in solution. Here, we discuss two complementary and generic bioconjugation methods that allow chemoselective immobilization of peptides and proteins via either their C-terminus (native chemical ligation) or their N-terminus (oxime ligation). While the protocols described in this chapter were designed for use in a Biacore instrument, the methods should also be applicable to other SPR instruments and, with slight adjustments, to many other types of bioanalytical applications that rely on protein-functionalized surfaces.
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Falconer RJ, Collins BM. Survey of the year 2009: applications of isothermal titration calorimetry. J Mol Recognit 2010; 24:1-16. [DOI: 10.1002/jmr.1073] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Abstract
The S-peptide and S-protein components of bovine pancreatic ribonuclease form a noncovalent complex with restored ribonucleolytic activity. Although this archetypal protein-fragment complementation system has been the object of historic work in protein chemistry, intrinsic limitations compromise its utility. Modern methods are shown to overcome those limitations and enable new applications.
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Affiliation(s)
- Rex W Watkins
- Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706-1544, USA
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Bogdan N, Matache M, Meier V, Dobrotă C, Dumitru I, Roiban G, Funeriu D. Protein-Inorganic Array Construction: Design and Synthesis of the Building Blocks. Chemistry 2010; 16:2170-80. [DOI: 10.1002/chem.200902649] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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16
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Bastings MMC, de Greef TFA, van Dongen JLJ, Merkx M, Meijer EW. Macrocyclization of enzyme-based supramolecular polymers. Chem Sci 2010. [DOI: 10.1039/c0sc00108b] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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