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Gole B, Kauffmann B, Tron A, Maurizot V, McClenaghan N, Huc I, Ferrand Y. Selective and Cooperative Photocycloadditions within Multistranded Aromatic Sheets. J Am Chem Soc 2022; 144:6894-6906. [PMID: 35380826 DOI: 10.1021/jacs.2c01269] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
A series of aromatic helix-sheet-helix oligoamide foldamers composed of several different photosensitive diazaanthracene units have been designed and synthesized. Molecular objects up to 7 kDa were straightforwardly produced on a 100 mg scale. Nuclear magnetic resonance and crystallographic investigations revealed that helix-sheet-helix architectures can adopt one or two distinct conformations. Sequences composed of an even number of turn units were found to fold in a canonical symmetrical conformation with two helices of identical handedness stacked above and below the sheet segment. Sequences composed of an odd number of turns revealed a coexistence between a canonical fold with helices of opposite handedness and an alternate fold with a twist within the sheet and two helices of identical handedness. The proportions between these species could be manipulated, in some cases quantitatively, being dependent on solvent, temperature, and absolute control of helix handedness. Diazaanthracene units were shown to display distinct reactivity toward [4 + 4] photocycloadditions according to the substituent in position 9. Their organization within the sequences was programmed to allow photoreactions to take place in a specific order. Reaction pathways and kinetics were deciphered and product characterized, demonstrating the possibility to orchestrate successive photoreactions so as to avoid orphan units or to deliberately produce orphan units at precise locations. Strong cooperative effects were observed in which the photoreaction rate was influenced by the presence (or absence) of photoadducts in the structure. Multiple photoreactions within the aromatic sheet eventually lead to structure lengthening and stiffening, locking conformational equilibria. Photoproducts could be thermally reverted.
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Affiliation(s)
- Bappaditya Gole
- Univ. Bordeaux, CNRS, Bordeaux Institut National Polytechnique, CBMN (UMR 5248), 2 rue Escarpit, 33600 Pessac, France
| | - Brice Kauffmann
- Univ. Bordeaux, CNRS, INSERM, Institut Européen de Chimie Biologie (UMS3033/US001), 2 rue Escarpit, 33600 Pessac, France
| | - Arnaud Tron
- Univ. Bordeaux, CNRS, Institut des Sciences Moléculaires (UMR5255), 351 cours de la Libération, 33405 Talence cedex, France
| | - Victor Maurizot
- Univ. Bordeaux, CNRS, Bordeaux Institut National Polytechnique, CBMN (UMR 5248), 2 rue Escarpit, 33600 Pessac, France
| | - Nathan McClenaghan
- Univ. Bordeaux, CNRS, Institut des Sciences Moléculaires (UMR5255), 351 cours de la Libération, 33405 Talence cedex, France
| | - Ivan Huc
- Department of Pharmacy, Ludwig-Maximilians-University, Butenandtstr. 5-13, 81377 Munich, Germany.,Cluster of Excellence e-Conversion, 85748 Garching, Germany
| | - Yann Ferrand
- Univ. Bordeaux, CNRS, Bordeaux Institut National Polytechnique, CBMN (UMR 5248), 2 rue Escarpit, 33600 Pessac, France
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Song G, Kim KM, Lee S, Jeong KS. Subtle Modification of Imine-linked Helical Receptors to Significantly Alter their Binding Affinities and Selectivities for Chiral Guests. Chem Asian J 2021; 16:2958-2966. [PMID: 34378325 DOI: 10.1002/asia.202100768] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/04/2021] [Indexed: 11/07/2022]
Abstract
Aromatic helical receptors P-1 and P-2 were slightly modified by aerobic oxidation to afford new receptors P-7 and P-8 with right-handed helical cavities. This subtle modification induced significant changes in the binding properties for chiral guests. Specifically, P-1 was reported to bind d-tartaric acid (Ka =35500 M-1 ), used as a template, much strongly than l-tartaric acid (326 M-1 ). In contrast, its modified receptor P-7 exhibited significantly reduced affinities for d-tartaric acid (3600 M-1 ) and l-tartaric acid (125 M-1 ). More dramatic changes in the affinities and selectivities were observed for P-2 and P-8 upon binding of polyol guests. P-2 was determined to selectively bind d-sorbitol (52000 M-1 ) over analogous guests, but P-8 showed no binding selectivity: d-sorbitol (1890 M-1 ), l-sorbitol (3330 M-1 ), d-arabitol (959 M-1 ), l-arabitol (4970 M-1 ) and xylitol (4960 M-1 ) in 5% (v/v) DMSO/CH2 Cl2 at 25±1 °C. These results clearly demonstrate that even subtle post-modifications of synthetic receptors may significantly alter their binding affinities and selectivities, in particular for guests of long and flexible chains.
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Affiliation(s)
- Geunmoo Song
- Department of Chemistry, Yonsei University, Seoul, 03722, Republic of Korea
| | - Kyung Mog Kim
- Department of Chemistry, Yonsei University, Seoul, 03722, Republic of Korea
| | - Seungwon Lee
- Department of Chemistry, Yonsei University, Seoul, 03722, Republic of Korea
| | - Kyu-Sung Jeong
- Department of Chemistry, Yonsei University, Seoul, 03722, Republic of Korea
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3
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Xu Y, Liu C, Wang H, Zhang D, Li Z. Intermolecular Halogen Bonding-Controlled Self-Assembly of Hydrogen Bonded Aromatic Amide Foldamers. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202102012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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4
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Song G, Jeong KS. Aromatic Helical Foldamers as Nucleophilic Catalysts for the Regioselective Acetylation of Octyl β-d-Glucopyranoside. Chempluschem 2020; 85:2475-2481. [PMID: 33206472 DOI: 10.1002/cplu.202000685] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 11/03/2020] [Indexed: 12/31/2022]
Abstract
Two indolocarbazole-naphthyridine foldamers 2 and 3 that fold into helical conformations were prepared. The 4-(N,N-dimethylamino)pyridine (DMAP) moiety was introduced at one end of the foldamer strands to develop foldamer-based catalysts for the site-selective acylation of polyols. These foldamers adopt helical conformations containing internal cavities capable of binding octyl β-d-glucopyranoside. The association constants were determined to be 1.9 (±0.1)×105 M-1 for 2 and 2.1 (±0.1)×105 M-1 for 3 in CH2 Cl2 at 25 °C. In the presence of DMAP, 2 or 3 as the catalysts, octyl β-d-glucopyranoside was subjected to acetylation under identical reaction conditions. The DMAP-catalysed reaction afforded the random distribution of the monoacetylates (6-OAc : 4-OAc : 3-OAc : 2-OAc=33 : 24 : 41 : 2). In contrast, foldamers 2 and 3 led to the predominant formation of 6-OAc. The relative distributions were estimated to be 6-OAc : 4-OAc : 3-OAc=88 : 4 : 6 : ∼0 with 2 and 6-OAc : 4-OAc : 3-OAc : 2-OAc=90 : 3 : 6 : 1 with 3.
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Affiliation(s)
- Geunmoo Song
- Department of Chemistry, Yonsei University, Seoul, 03722, Republic of Korea
| | - Kyu-Sung Jeong
- Department of Chemistry, Yonsei University, Seoul, 03722, Republic of Korea
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Kim KM, Song G, Lee S, Jeon H, Chae W, Jeong K. Template‐Directed Quantitative One‐Pot Synthesis of Homochiral Helical Receptors Enabling Enantioselective Binding. Angew Chem Int Ed Engl 2020; 59:22475-22479. [DOI: 10.1002/anie.202011230] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Indexed: 01/11/2023]
Affiliation(s)
- Kyung Mog Kim
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Geunmoo Song
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Seungwon Lee
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Hae‐Geun Jeon
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Woojeong Chae
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Kyu‐Sung Jeong
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
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Kim KM, Song G, Lee S, Jeon H, Chae W, Jeong K. Template‐Directed Quantitative One‐Pot Synthesis of Homochiral Helical Receptors Enabling Enantioselective Binding. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202011230] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Kyung Mog Kim
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Geunmoo Song
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Seungwon Lee
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Hae‐Geun Jeon
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Woojeong Chae
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
| | - Kyu‐Sung Jeong
- Department of Chemistry Yonsei University Seoul 03722 Republic of Korea
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Gole B, Kauffmann B, Maurizot V, Huc I, Ferrand Y. Light‐Controlled Conformational Switch of an Aromatic Oligoamide Foldamer. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201902378] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Bappaditya Gole
- CBMN (UMR5248) Univ. Bordeaux – CNRS – IPB Institut Européen de Chimie et Biologie 2 rue Escarpit 33600 Pessac France
| | - Brice Kauffmann
- Université de Bordeaux CNRS INSERM, UMS3033 Institut Européen de Chimie et Biologie (IECB) 2 rue Robert Escarpit 33600 Pessac France
| | - Victor Maurizot
- CBMN (UMR5248) Univ. Bordeaux – CNRS – IPB Institut Européen de Chimie et Biologie 2 rue Escarpit 33600 Pessac France
| | - Ivan Huc
- Department of Pharmacy and Center for Integrated Protein Science Ludwig-Maximilians-Universität Butenandtstr. 5–13 81377 München Germany
| | - Yann Ferrand
- CBMN (UMR5248) Univ. Bordeaux – CNRS – IPB Institut Européen de Chimie et Biologie 2 rue Escarpit 33600 Pessac France
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Gole B, Kauffmann B, Maurizot V, Huc I, Ferrand Y. Light‐Controlled Conformational Switch of an Aromatic Oligoamide Foldamer. Angew Chem Int Ed Engl 2019; 58:8063-8067. [DOI: 10.1002/anie.201902378] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Indexed: 12/31/2022]
Affiliation(s)
- Bappaditya Gole
- CBMN (UMR5248) Univ. Bordeaux – CNRS – IPB Institut Européen de Chimie et Biologie 2 rue Escarpit 33600 Pessac France
| | - Brice Kauffmann
- Université de Bordeaux CNRS INSERM, UMS3033 Institut Européen de Chimie et Biologie (IECB) 2 rue Robert Escarpit 33600 Pessac France
| | - Victor Maurizot
- CBMN (UMR5248) Univ. Bordeaux – CNRS – IPB Institut Européen de Chimie et Biologie 2 rue Escarpit 33600 Pessac France
| | - Ivan Huc
- Department of Pharmacy and Center for Integrated Protein Science Ludwig-Maximilians-Universität Butenandtstr. 5–13 81377 München Germany
| | - Yann Ferrand
- CBMN (UMR5248) Univ. Bordeaux – CNRS – IPB Institut Européen de Chimie et Biologie 2 rue Escarpit 33600 Pessac France
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9
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McPherson JN, Das B, Colbran SB. Tridentate pyridine–pyrrolide chelate ligands: An under-appreciated ligand set with an immensely promising coordination chemistry. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2018.01.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Ferrand Y, Huc I. Designing Helical Molecular Capsules Based on Folded Aromatic Amide Oligomers. Acc Chem Res 2018; 51:970-977. [PMID: 29589916 DOI: 10.1021/acs.accounts.8b00075] [Citation(s) in RCA: 143] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The ab initio rational structure-based design of a synthetic molecular receptor for a given complex biomolecular guest remains an elusive objective, yet remarkable progress has been achieved in recent years. This Account deals with the use of folded artificial aromatic amide oligomers, also termed aromatic foldamers, inspired from biopolymer structures, for the design of helical molecular capsules that can recognize guest molecules, completely surround them, and isolate them from the solvent, thus giving rise to a sort of guest encapsulation associated with slow binding and release kinetics. The development of new amino acid, diacid, and diamine monomers, a main source of creativity in this field, progress in their assembly into ever longer oligoamide sequences, and the predictability of the folded structures due to their inherent rigidity and simple folding principles, allowed for the design and preparation of unimolecular and bimolecular capsule shapes. These capsules consist of molecular helices having a large diameter in the middle and a narrow diameter at both ends thus creating a cavity suitable for binding a guest molecule. The understanding of molecular recognition properties within these bioinspired containers has greatly progressed. Recognition of simple guests such as diols or amino-alcohols may thus be predicted, and hosts can be proposed for guests as complex as saccharides using first principle design. Taking advantage of the modular nature of oligomeric sequences, of their synthetic accessibility and of their propensity to grow into crystals suitable for X-ray crystallographic analysis, a structure-based iterative design methodology has been developed that eventually yielded exquisite guest selectivity, affinity, and diastereoselectivity. This methodology involves rational negative design steps during which changes in the foldamer capsule sequence are not intended to improve binding to the targeted guest but instead to exclude the binding of other guests while preserving key interactions with the target. Metal ions can also be introduced at the inner rim of foldamer capsules and eventually assist the binding of an organic guest. These results demonstrate the viability of an ab initio approach to abiotic receptor design based on aromatic foldamers. The dynamic of the capsules associated with their self-organized nature provides opportunities to not only tune guest binding and selectivity, but also guest capture and release kinetics as well as cavity size and shape. Controlled release thus emerges as a realistic objective. Recent progress thus opens up multiple perspectives for the development of tailored hosts, sensors, and carriers structurally and conceptually different from earlier generations of macrocyclic-based receptors or from supramolecular containers produced by self-assembly.
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Affiliation(s)
- Yann Ferrand
- Université
de Bordeaux, CNRS, Bordeaux Institut National Polytechnique, CBMN
(UMR 5248), Institut Européen de Chimie et Biologie, 2 Rue Escarpit, 33600 Pessac, France
| | - Ivan Huc
- Department Pharmazie, Ludwig-Maximilians-Universität, Butenandtstraße 5-13, D-81377 München, Germany
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11
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Matheu R, Ertem MZ, Pipelier M, Lebreton J, Dubreuil D, Benet-Buchholz J, Sala X, Tessier A, Llobet A. The Role of Seven-Coordination in Ru-Catalyzed Water Oxidation. ACS Catal 2018. [DOI: 10.1021/acscatal.7b03638] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Roc Matheu
- Institute
of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Technology (BIST), Avinguda Països Catalans 16, 43007 Tarragona, Spain
- Departament
de Química Física i Inorgànica, Universitat Rovira i Virgili, Marcel·lí Domingo s/n, 43007 Tarragona, Spain
| | - Mehmed Z. Ertem
- Chemistry Division, Energy & Photon Sciences Directorate, Brookhaven National Laboratory, Upton, New York 11973-5000, United States
| | - Muriel Pipelier
- Université de Nantes, CNRS, CEISAM, UMR 6230, Faculté
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes, France
| | - Jacques Lebreton
- Université de Nantes, CNRS, CEISAM, UMR 6230, Faculté
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes, France
| | - Didier Dubreuil
- Université de Nantes, CNRS, CEISAM, UMR 6230, Faculté
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes, France
| | - Jordi Benet-Buchholz
- Institute
of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Technology (BIST), Avinguda Països Catalans 16, 43007 Tarragona, Spain
| | - Xavier Sala
- Departament
de Química, Universitat Autònoma de Barcelona, Cerdanyola
del Vallès, 08193 Barcelona, Spain
| | - Arnaud Tessier
- Université de Nantes, CNRS, CEISAM, UMR 6230, Faculté
des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322 Nantes, France
| | - Antoni Llobet
- Institute
of Chemical Research of Catalonia (ICIQ), Barcelona Institute of Technology (BIST), Avinguda Països Catalans 16, 43007 Tarragona, Spain
- Departament
de Química, Universitat Autònoma de Barcelona, Cerdanyola
del Vallès, 08193 Barcelona, Spain
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Elacqua E, Manning KB, Lye DS, Pomarico SK, Morgia F, Weck M. Supramolecular Multiblock Copolymers Featuring Complex Secondary Structures. J Am Chem Soc 2017; 139:12240-12250. [DOI: 10.1021/jacs.7b06201] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Elizabeth Elacqua
- Department of Chemistry and
Molecular Design Institute, New York University, New York, New York 10003, United States
| | - Kylie B. Manning
- Department of Chemistry and
Molecular Design Institute, New York University, New York, New York 10003, United States
| | - Diane S. Lye
- Department of Chemistry and
Molecular Design Institute, New York University, New York, New York 10003, United States
| | - Scott K. Pomarico
- Department of Chemistry and
Molecular Design Institute, New York University, New York, New York 10003, United States
| | - Federica Morgia
- Department of Chemistry and
Molecular Design Institute, New York University, New York, New York 10003, United States
| | - Marcus Weck
- Department of Chemistry and
Molecular Design Institute, New York University, New York, New York 10003, United States
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Horeau M, Lautrette G, Wicher B, Blot V, Lebreton J, Pipelier M, Dubreuil D, Ferrand Y, Huc I. Metal-Coordination-Assisted Folding and Guest Binding in Helical Aromatic Oligoamide Molecular Capsules. Angew Chem Int Ed Engl 2017; 56:6823-6827. [PMID: 28471081 DOI: 10.1002/anie.201701693] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Indexed: 11/07/2022]
Abstract
The development of foldamer-based receptors is driven by the design of monomers with specific properties. Herein, we introduce a pyridazine-pyridine-pyridazine diacid monomer and its incorporation into helical aromatic oligoamide foldamer containers. This monomer codes for a wide helix diameter and can sequester metal ions on the inner wall of the helix cavity. Crystallographic studies and NMR titrations show that part of the metal coordination sphere remains available and may then promote the binding of a guest within the cavity. In addition to metal coordination, binding of the guest is assisted by cooperative interactions with the helix host, thereby resulting in significant enhancements depending on the foldamer sequence, and in slow guest capture and release on the NMR time scale. In the absence of metal ions, the pyridazine-pyridine-pyridazine monomer promotes an extended conformation of the foldamer that results in aggregation, including the formation of an intertwined duplex.
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Affiliation(s)
- Maxime Horeau
- UMR 6230-CEISAM, Univ. Nantes-CNRS, Faculté des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Guillaume Lautrette
- UMR 5248-CBMN, Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Barbara Wicher
- UMR 5248-CBMN, Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Virginie Blot
- UMR 6230-CEISAM, Univ. Nantes-CNRS, Faculté des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Jacques Lebreton
- UMR 6230-CEISAM, Univ. Nantes-CNRS, Faculté des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Muriel Pipelier
- UMR 6230-CEISAM, Univ. Nantes-CNRS, Faculté des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Didier Dubreuil
- UMR 6230-CEISAM, Univ. Nantes-CNRS, Faculté des Sciences et des Techniques, 2 rue de la Houssinière, BP 92208, 44322, Nantes Cedex 3, France
| | - Yann Ferrand
- UMR 5248-CBMN, Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Ivan Huc
- UMR 5248-CBMN, Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33600, Pessac, France
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14
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Horeau M, Lautrette G, Wicher B, Blot V, Lebreton J, Pipelier M, Dubreuil D, Ferrand Y, Huc I. Metal-Coordination-Assisted Folding and Guest Binding in Helical Aromatic Oligoamide Molecular Capsules. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201701693] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Maxime Horeau
- UMR 6230-CEISAM; Univ. Nantes-CNRS; Faculté des Sciences et des Techniques; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Guillaume Lautrette
- UMR 5248-CBMN; Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux; Institut Européen de Chimie et Biologie; 2 rue Robert Escarpit 33600 Pessac France
| | - Barbara Wicher
- UMR 5248-CBMN; Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux; Institut Européen de Chimie et Biologie; 2 rue Robert Escarpit 33600 Pessac France
| | - Virginie Blot
- UMR 6230-CEISAM; Univ. Nantes-CNRS; Faculté des Sciences et des Techniques; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Jacques Lebreton
- UMR 6230-CEISAM; Univ. Nantes-CNRS; Faculté des Sciences et des Techniques; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Muriel Pipelier
- UMR 6230-CEISAM; Univ. Nantes-CNRS; Faculté des Sciences et des Techniques; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Didier Dubreuil
- UMR 6230-CEISAM; Univ. Nantes-CNRS; Faculté des Sciences et des Techniques; 2 rue de la Houssinière, BP 92208 44322 Nantes Cedex 3 France
| | - Yann Ferrand
- UMR 5248-CBMN; Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux; Institut Européen de Chimie et Biologie; 2 rue Robert Escarpit 33600 Pessac France
| | - Ivan Huc
- UMR 5248-CBMN; Univ. Bordeaux-CNRS-Institut Polytechnique de Bordeaux; Institut Européen de Chimie et Biologie; 2 rue Robert Escarpit 33600 Pessac France
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15
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Opie CR, Kumagai N, Shibasaki M. Reversible Stereoselective Folding/Unfolding Fueled by the Interplay of Photoisomerism and Hydrogen Bonding. Angew Chem Int Ed Engl 2017; 56:3349-3353. [DOI: 10.1002/anie.201610279] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 01/17/2017] [Indexed: 12/29/2022]
Affiliation(s)
- Christopher R. Opie
- Institute of Microbial Chemistry (BIKAKEN), Tokyo; 3-14-23 Kamiosaki, Shinagawa-ku Tokyo 141-0021 Japan
| | - Naoya Kumagai
- Institute of Microbial Chemistry (BIKAKEN), Tokyo; 3-14-23 Kamiosaki, Shinagawa-ku Tokyo 141-0021 Japan
| | - Masakatsu Shibasaki
- Institute of Microbial Chemistry (BIKAKEN), Tokyo; 3-14-23 Kamiosaki, Shinagawa-ku Tokyo 141-0021 Japan
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16
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Opie CR, Kumagai N, Shibasaki M. Reversible Stereoselective Folding/Unfolding Fueled by the Interplay of Photoisomerism and Hydrogen Bonding. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201610279] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Christopher R. Opie
- Institute of Microbial Chemistry (BIKAKEN), Tokyo; 3-14-23 Kamiosaki, Shinagawa-ku Tokyo 141-0021 Japan
| | - Naoya Kumagai
- Institute of Microbial Chemistry (BIKAKEN), Tokyo; 3-14-23 Kamiosaki, Shinagawa-ku Tokyo 141-0021 Japan
| | - Masakatsu Shibasaki
- Institute of Microbial Chemistry (BIKAKEN), Tokyo; 3-14-23 Kamiosaki, Shinagawa-ku Tokyo 141-0021 Japan
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Elacqua E, Croom A, Manning KB, Pomarico SK, Lye D, Young L, Weck M. Supramolecular Diblock Copolymers Featuring Well-defined Telechelic Building Blocks. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201609103] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Elizabeth Elacqua
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Anna Croom
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Kylie B. Manning
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Scott K. Pomarico
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Diane Lye
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Lauren Young
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Marcus Weck
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
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18
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Elacqua E, Croom A, Manning KB, Pomarico SK, Lye D, Young L, Weck M. Supramolecular Diblock Copolymers Featuring Well-defined Telechelic Building Blocks. Angew Chem Int Ed Engl 2016; 55:15873-15878. [DOI: 10.1002/anie.201609103] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Indexed: 12/13/2022]
Affiliation(s)
- Elizabeth Elacqua
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Anna Croom
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Kylie B. Manning
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Scott K. Pomarico
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Diane Lye
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Lauren Young
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
| | - Marcus Weck
- Molecular Design Institute and Department of Chemistry; New York University; 100 Washington Square East New York NY 10003 USA
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19
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Gopalakrishnan R, Frolov AI, Knerr L, Drury WJ, Valeur E. Therapeutic Potential of Foldamers: From Chemical Biology Tools To Drug Candidates? J Med Chem 2016; 59:9599-9621. [PMID: 27362955 DOI: 10.1021/acs.jmedchem.6b00376] [Citation(s) in RCA: 122] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Over the past decade, foldamers have progressively emerged as useful architectures to mimic secondary structures of proteins. Peptidic foldamers, consisting of various amino acid based backbones, have been the most studied from a therapeutic perspective, while polyaromatic foldamers have barely evolved from their nascency and remain perplexing for medicinal chemists due to their poor drug-like nature. Despite these limitations, this compound class may still offer opportunities to study challenging targets or provide chemical biology tools. The potential of foldamer drug candidates reaching the clinic is still a stretch. Nevertheless, advances in the field have demonstrated their potential for the discovery of next generation therapeutics. In this perspective, the current knowledge of foldamers is reviewed in a drug discovery context. Recent advances in the early phases of drug discovery including hit finding, target validation, and optimization and molecular modeling are discussed. In addition, challenges and focus areas are debated and gaps highlighted.
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Affiliation(s)
- Ranganath Gopalakrishnan
- Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal, 431 83, Sweden.,AstraZeneca MPI Satellite Unit, Department of Chemical Biology, Max Planck Institute of Molecular Physiology , Dortmund 44202, Germany
| | - Andrey I Frolov
- Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal, 431 83, Sweden
| | - Laurent Knerr
- Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal, 431 83, Sweden
| | - William J Drury
- Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal, 431 83, Sweden
| | - Eric Valeur
- Cardiovascular and Metabolic Diseases, Innovative Medicines and Early Development Biotech Unit, AstraZeneca , Pepparedsleden 1, Mölndal, 431 83, Sweden
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20
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Yamasaki R, Fujikake S, Ito A, Migita K, Morita N, Tamura O, Okamoto I. Acid-induced molecular-structural transformation of N -methyl aromatic oligoamides bearing pyridine-2-carboxamide. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2015.11.058] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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21
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Alfonso I. From simplicity to complex systems with bioinspired pseudopeptides. Chem Commun (Camb) 2016; 52:239-50. [DOI: 10.1039/c5cc07596c] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
This feature article highlights some of the recent advances in creating complexity from simple pseudopeptidic molecules. The bioinspired approaches discussed here allowed an increase in the structural, chemical and interactional complexity (see figure).
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Affiliation(s)
- Ignacio Alfonso
- Department of Biological Chemistry and Molecular Modelling
- Institute of Advanced Chemistry of Catalonia
- IQAC-CSIC
- Jordi Girona
- 18-26
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22
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Denisov SA, Gan Q, Wang X, Scarpantonio L, Ferrand Y, Kauffmann B, Jonusauskas G, Huc I, McClenaghan ND. Electronic Energy Transfer Modulation in a Dynamic Foldaxane: Proof-of-Principle of a Lifetime-Based Conformation Probe. Angew Chem Int Ed Engl 2015; 55:1328-33. [DOI: 10.1002/anie.201508611] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Revised: 11/09/2015] [Indexed: 11/06/2022]
Affiliation(s)
- Sergey A. Denisov
- Univ. Bordeaux-CNRS UMR 5255; 351 Crs de la Libération 33405 Talence France
- Univ. Bordeaux-CNRS UMR 5798; 351 Crs de la Libération 33405 Talence France
| | - Quan Gan
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
| | - Xiang Wang
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
| | - Luca Scarpantonio
- Univ. Bordeaux-CNRS UMR 5255; 351 Crs de la Libération 33405 Talence France
| | - Yann Ferrand
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
| | - Brice Kauffmann
- Université de Bordeaux, UMS3033; Institut Européen de Chimie et Biologie (IECB); 2 rue Escarpit 33600 Pessac France
- CNRS, IECB, UMS3033-INSERM, IECB, US001; France
| | | | - Ivan Huc
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
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23
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Denisov SA, Gan Q, Wang X, Scarpantonio L, Ferrand Y, Kauffmann B, Jonusauskas G, Huc I, McClenaghan ND. Electronic Energy Transfer Modulation in a Dynamic Foldaxane: Proof-of-Principle of a Lifetime-Based Conformation Probe. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201508611] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Sergey A. Denisov
- Univ. Bordeaux-CNRS UMR 5255; 351 Crs de la Libération 33405 Talence France
- Univ. Bordeaux-CNRS UMR 5798; 351 Crs de la Libération 33405 Talence France
| | - Quan Gan
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
| | - Xiang Wang
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
| | - Luca Scarpantonio
- Univ. Bordeaux-CNRS UMR 5255; 351 Crs de la Libération 33405 Talence France
| | - Yann Ferrand
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
| | - Brice Kauffmann
- Université de Bordeaux, UMS3033; Institut Européen de Chimie et Biologie (IECB); 2 rue Escarpit 33600 Pessac France
- CNRS, IECB, UMS3033-INSERM, IECB, US001; France
| | | | - Ivan Huc
- Université de Bordeaux, CBMN, UMR5248; Institut Européen de Chimie et Biologie; 2 rue Escarpit 33600 Pessac France
- CNRS, CBMN, UMR5248; France
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24
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Abe H, Kayamori F, Inouye M. Glycosyl-Templated Chiral Helix Stapling of Ethynylpyridine Oligomers by Alkene Metathesis between Inter-Pitch Side Chains. Chemistry 2015; 21:9405-13. [DOI: 10.1002/chem.201501102] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2015] [Indexed: 11/10/2022]
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25
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26
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Mandal PK, Collie GW, Kauffmann B, Huc I. Racemic DNA Crystallography. Angew Chem Int Ed Engl 2014; 53:14424-7. [DOI: 10.1002/anie.201409014] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2014] [Indexed: 12/14/2022]
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27
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Katoono R, Tanaka Y, Fujiwara K, Suzuki T. A Foldable Cyclic Oligomer: Chiroptical Modulation through Molecular Folding upon Complexation and a Change in Temperature. J Org Chem 2014; 79:10218-25. [PMID: 25265438 DOI: 10.1021/jo501883m] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Ryo Katoono
- Department of Chemistry,
Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Yuki Tanaka
- Department of Chemistry,
Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Kenshu Fujiwara
- Department of Chemistry,
Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
| | - Takanori Suzuki
- Department of Chemistry,
Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan
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28
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Singleton ML, Pirotte G, Kauffmann B, Ferrand Y, Huc I. Increasing the Size of an Aromatic Helical Foldamer Cavity by Strand Intercalation. Angew Chem Int Ed Engl 2014; 53:13140-4. [DOI: 10.1002/anie.201407752] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2014] [Indexed: 11/06/2022]
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29
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Singleton ML, Pirotte G, Kauffmann B, Ferrand Y, Huc I. Increasing the Size of an Aromatic Helical Foldamer Cavity by Strand Intercalation. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201407752] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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30
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Abramyan AM, Liu Z, Pophristic V. Mechanistic and dynamic insights into ligand encapsulation by helical arylamide foldamers. Phys Chem Chem Phys 2014; 16:20406-10. [DOI: 10.1039/c4cp02839b] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A hydrazine molecule encapsulated in an arylamide helical foldamer escaping from the “top” (top) and “side” (bottom) of the capsule in the aqueous and methanol solution, respectively.
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Affiliation(s)
- Ara M. Abramyan
- Department of Chemistry & Biochemistry
- University of the Sciences
- Philadelphia, USA
| | - Zhiwei Liu
- Department of Chemistry & Biochemistry
- University of the Sciences
- Philadelphia, USA
| | - Vojislava Pophristic
- Department of Chemistry & Biochemistry
- University of the Sciences
- Philadelphia, USA
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