Amino Acid Chirality and Ferrocene Conformation Guided Self‐Assembly and Gelation of Ferrocene–Peptide Conjugates

Ferrocene: an exotic building block for supramolecular assemblies

Ferrocene (Fc), a classical organometallic complex, has found potential applications in ligand design, catalysis, and analytical, biological, medicinal and materials chemistry. In recent years, the use of Fc as a building block in supramolecular chemistry has emerged. The molecular shape, size, and hydrophobicity of Fc make it an ideal guest for a variety of macrocyclic host molecules to form stable host-guest complexes. The vertical distance (3.3 Å) between two cyclopentadienyl rings and molecular "ball bearing" property in Fc support the formation of intramolecular π-π stacking, H-bonding and metallophilic interactions between two appropriate substituents in 1,n'-disubstituted ferrocenes. Along with these molecular features, the rigidity along with rotational flexibility, redox reversibility and oxidation-triggered tunable hydrophobicity of Fc have led to its use as an exotic building block for the development of a wide range of supramolecular assemblies such as smart molecular receptors, intricate metal-organic assemblies, supramolecular polymers, and gels including out-of-equilibrium assemblies and metal nanoparticle assemblies. This review highlights the concepts behind the design and development of these assemblies, where the Fc unit has a direct and defined role in their formation and function. The use of Fc in supramolecular assembly is still a relatively young field and set to be the subject of increasing research interest towards the development of fascinating supramolecular structures with tailored properties and programmable functions towards applications in materials and biological sciences.

Atomic Insight on Inhibition of Fibrillization of Dipeptides by Replacement of Phenylalanine with Tryptophan

Tryptophan (Trp) conjugates destabilize amyloid fibrils responsible for amyloidoses. However, the mechanism of such destabilization is obscure. Herein the self-assembly of four synthesized Trp-containing dipeptides Boc-xxx-Trp-OMe (xxx: Val, Leu, Ile, and Phe) has been investigated and compared with the existing report on their Phe congeners. Two among them are the C-terminal tryptophan analogs of Boc-Val-Phe-OMe (VF, Aβ_18-19) and Boc-Phe-Phe-OMe (FF, Aβ_19-20), part of the central hydrophobic region of amyloid-β (Aβ_1-42). While Boc-Val-Trp-OMe (VW), Boc-Leu-Trp-OMe (LW), Boc-Ile-Trp-OMe (IW), and Boc-Phe-Trp-OMe (FW) displayed a spherical morphology in FESEM and AFM images, the corresponding phenylalanine-containing dipeptides displayed various fibrous structures. Single-crystal X-ray diffraction (SC-XRD) indicated that peptides VW and IW exhibited structures containing parallel β-sheet, cross-β-structure, sheet-like layer structure, and helical arrangement in the solid state. Interestingly, peptide FW displayed inverse γ-turn conformation (similar to open-turn structure), antiparallel β-sheet structure, columnar structure, supramolecular nanozipper structure, sheet-like layer arrangement, and helical architecture in the solid state. The open-turn conformation and nanozipper structure formation by FW may be the first example of a dipeptide that forms such structures. The minute but consistent differences in molecular packing at the atomic level between Trp and Phe congeners may be responsible for their remarkably different supramolecular structure generation. This molecular-level structural analysis may be helpful for the de novo design of peptide nanostructures and therapeutics. Similar studies by the Debasish Haldar group are reported, but they investigated the inhibition of fibrillization of dipeptides by tyrosine and interactions are expectedly different.

Stimuli-Responsive Self-Assembly Disassembly in Peptide Amphiphiles to Endow Block-co-Fibers and Tunable Piezoelectric Response

Supramolecular assemblies with well-defined structural attenuation toward varied functional implications are an emerging area in mimicking natural biomaterials. In that regard, the redox stimuli-responsive ferrocene moiety can reversibly change between a nonpolar ferrocenyl and polar ferrocenium cation that endows interesting modular features to the building blocks with respect to self-assembly/disassembly. We design a series of ferrocene anchored peptide fragment ^NVFFAKK^C using hydrophobic alkyl spacers of different chain lengths. Increasing the spacer length between the redox-responsive and self-assembling motifs increases the propensity to form robust nanofibers, which can be physically cross-linked to form hydrogels. The controlled redox response of the ferrocene moiety tandem with pH control provides access to structural control over the peptide nanostructures and tunable mechanical strengths. Further, such redox-sequestered dormant states hinder the spontaneous nucleation process that we exploit toward seeded supramolecular polymerization to form block cofibers composed of redox-responsive periphery and nonresponsive cores. Finally, such redox sequestration of peptide self-assembly renders an on-off piezoelectric response for potential utilization in peptide bioelectronics.

Introduction of Ferrocene as a Facilitator for the Construction of Supramolecular Polymers

Proper monomer design is the key to enhancing the strength of noncovalent interactions between the molecules toward the efficient formation of supramolecular polymers (SPs). We have designed and synthesized 1,n'-disubstituted ferrocene-azobenzene-long alkyl chains, Fc(CONH-Azo-TDP)₂ , to afford SPs with a high probability. The design exploits the ''molecular ball-bearing'' property of the ferrocene core, which allows two azobenzene arms to rotate in the planes of cyclopentadienyl rings, generating the most suitable molecular conformation required for SP formation. This ferrocene monomer formed a supergel consisting of SPs supported by strong intermolecular (H-bonding and π-π stacking) interactions and higher enthalpy gain than the reference molecules, where the central ferrocene core was replaced by flexible aliphatic as well as rigid benzene linkers. The molecular conformation involved in SPs, the strength of noncovalent interactions, and the process of supramolecular polymerization were investigated through NMR, UV-Vis, XRD and TEM studies. The results demonstrate that ferrocene may act as a good modulator for constructing efficient SPs.

Discovery of Y-Shaped Supramolecular Polymers in a Self-Assembling Peptide Amphiphile System

Supramolecular polymers (SPs) formed by self-assembly of peptide-based molecular units assume a variety of interesting one-dimensional (1D) morphologies. While the morphological complexity and phase behavior of self-assembling peptide conjugates bear some resemblance to those of low-molecular-weight and macromolecular surfactants, Y-junctions, or three-way connected constructs, a topological defect observed in traditional surfactants has not been identified, likely due to the intolerance of defective packing by the strong, associative interactions afforded by the peptide segments. Here we report our discovery of branched SPs with Y-junctions and occasionally enlarged spherical end-caps formed by micellization of a ferrocene-based peptide amphiphile in water. Our results suggest that the incorporation of two ferrocenes into the amphiphile design is key to ensure the formation of branched SPs. We hypothesize that the complex interplay of internal interactions limits the effective propagation of hydrogen bonding within the assemblies and, consequently, creates fragmented β-sheets that are more tolerant for supramolecular branching. Given the redox sensitivity of the ferrocene units, sequential addition of reductants and oxidants to the solution led the assemblies to reversibly transform between branched SPs and spherical aggregates.

Chirality from D-guanosine to L-guanosine shapes a stable gel for three-dimensional cell culture

It is proved that L-guanosine (L-G) as an enantiomer of D-guanosine (D-G) forms more stable gels than D-G, suggesting that alteration of chirality may be a new strategy for improving the lifetime stability of supramolecular hydrogels. Experiments for three-dimensional cell culture reveal that the L-G gel is a candidate for the extracellular matrix.

The origin of supramolecular chirality in 1-ferrocenyl amino acids

π-Conjugated amino acids are widely applied in chiroptical materials, in which chiroptical activities are believed to originate from supramolecular packing. However, the intramolecular contribution has been largely ignored. In this work, we report that intramolecular chirality transfer behaviors in ferrocene-conjugated amino acids depend on the substituent groups, which influence the modality of multiple intramolecular interactions, as well as the molecular geometry. The structural basis and structure-property relationships of chirality and chiroptical activities were unveiled in this work. Based on single crystal structure and density functional theory calculations, we demonstrate that intramolecular weak forces, including hydrogen bonds, CHπ interactions and van der Waals interactions, affect the molecular geometry and contribute to diverse Cotton effects. This work provides evidence for the ignored intramolecular factors in self-assembled systems and paves the way for the fabrication of functional chiroptical systems.

An Organometallic Isostere of an Amino Acid

An organometallic complex that mimics an amino acid, also known as an amino acid isostere, can be synthesized from a functionalized bipyridine ligand and a fac-[Re(CO)₃]⁺ center. The reaction of an achiral ligand and metal results in a racemic mixture of chiral-at-metal complexes. These metal species have amine and carboxy termini, a side chain type unit that can be varied, as well as the chiral metal that is analogous to the α carbon of an amino acid. The racemic mixtures can be separated into enantiomers by chiral chromatography, and the metal complexes can be incorporated into peptides by using solid-phase peptide synthesis.

Self-Assembly of Ferrocenyl Phenylalanine into Nanohelical Arrays via Kinetic Control

The spontaneous alignment of self-assembled chiral nanostructures at macroscopic scales is appealing because of their unique structural features and physicochemical properties. Here we present the construction of highly ordered bioorganometallic nanohelical arrays on the basis of the hierarchical chiral self-assembly of the simple ferrocenyl l-phenylalanine (Fc-l-F). The formation of nanohelical arrays is under kinetic control, which can be controlled by changing the growth time and the vapor temperature. The chiral nanoarrays can generate circularly polarized luminescence by the incorporation of fluorescent dyes. Moreover, due to the redox activity of the Fc moiety, the nanohelical arrays show enhanced electrical capacity compared with previously reported peptide nanomaterials. The results shed light on the highly ordered chiral self-assembled nanomaterials, which have potential applications in fields of optics, sensing, and energy storage.

Amphiphilic conjugates of ferrocene with amino acids and peptides: Design, synthesis, and studies on their aggregation behavior

A new class of ferrocenyl surfactants based on covalent linkage between amino acids or peptides and ferrocene was designed. Accordingly, five ferrocenyl amphiphiles, FcS1-5, were synthesized, and their aggregation behaviors in aqueous solutions were studied. Compared to the other surfactants containing ferrocenyl units, FcS have a relatively smaller size and low molecular weight and are easy to synthesize. The influences of the number of carboxylic acid head groups and the number of Fc group in the hydrophobic tail, on the stability and aggregation behavior of these amphiphiles in aqueous medium, were explored to deduce the structure property relationships. A combination of fluorescence and dynamic light scattering techniques was used to elucidate the behavior of these molecules. A good agreement between the results obtained using different techniques was observed.

Synthesis and solvent-controlled self-assembly of diketopiperazine-based polyamides from aspartame

An aspartame-based AB-type diketopiperazine monomer, cyclo(l-aspartyl-4-amino-l-phenylalanyl) (ADKP), was synthesized and subsequently utilized in the polycondensation of homo-polyamides with high molecular weights. By using various amino acids, dicarboxylic acids, and diamines, random DKP-based copolymers were also synthesized. The self-assembly properties of ADKP and poly(cyclo(l-aspartyl-4-amino-l-phenylalanyl)) (PA1) were studied via the solvent displacement method. Notably, PA1 self-assembled into particles with various morphologies in different solvent systems, such as irregular networks, ellipsoids, and hollow particles. The morphological transformation was also confirmed by dropping acetone and toluene onto the PA1 particles. Furthermore, infrared spectra and Hansen solubility parameters of PA1 and different solvents revealed the particle formation mechanism, which provided more insights into the relationship between the morphology and strength of the hydrogen bonding of each solvent.

Diketopiperazine-based polyamides have been synthesized from aspartame, and could self-assemble into particles with various morphologies in different solvents.

Control of peptide hydrogel formation and stability via heating treatment

Heating treatment is widely used in the preparation of metallic materials with controlled phase behavior and mechanical properties. However, for the soft materials assembled by short peptides, especially simple dipeptides, the detailed influences of heating treatment on the structures and functions of the materials remain largely unexplored. Here we showed that by thermal annealing or quenching of aromatic peptide solutions under kinetic control, we are able to control the self-assembly of peptide into materials with distinct phase behavior and macroscopic properties. The thermal annealing of the heated peptide solutions will lead to the formation of large nanobelts or bundles in solution, and no gels will be formed. However, by quenching the heated peptide solution, a self-supporting hydrogel will be formed quickly. Structure analysis revealed that the peptides preferred to self-assembled into much thinner and flexible nanohelices during quenching treatment. Moreover, the stability of the gels further increased with the repeated heating and quenching cycling of the peptide solutions. The results demonstrated that the heat treatment can be used to control the structure and function of self-assembled materials in a way similar to that of the conventional metallic or alloy materials.

Recent advances in the bile acid based conjugates/derivatives towards their gelation applications

Bile acids have contributed immensely to hydrogel research due to their peculiar physicochemical properties and biocompatibility. The wide accessibility of bile acids and their straightforward derivatization methods make them attractive building blocks for the design of novel hydrogels systems to deliver biomolecules, drugs, and vaccines. This review conceptualizes recent developments in bile acid-based hydrogels and their applications. These bile-based hydrogels have the ability to absorb carbon dioxide efficiently and may potentially work as alternative materials for carbon dioxide capture and storage. The hydrogels hold great potential in medicine and biology applications as drug carriers and models for fundamental self-assembly in pathological conditions. Herein, we have summarized the efforts that have been made for the development of molecular hydrogels in terms of biocompatibility, therapeutic applications, and challenges associated with existing molecular hydrogels.

Updates in bile acid-bioactive molecule conjugates and their applications

Bile acid conjugates are emerging as important chemical resources due to their low cost and wide availability of bile acids, making them privileged molecules in drug carrier systems and building blocks for derivatization and chiral template introduction into bioactive molecules. In recent years, bile acids as scaffolds in supramolecular, medicinal, and material chemistry attracted prime focus of researchers as an area of research to be followed with passion. Due to peculiar physicochemical and biological properties, bile acid exhibited various applications in biomedical and pharmaceutical fields. In this review, the bile acid conjugations with different bioactive compounds have been discussed to understand their influence on the bioavailability of bioactive compounds.

Cyclodextrin-Assisted Two-Component Sonogel for Visual Humidity Sensing

In this work, two naphthalimide-based compounds, 1a and 1b, have been designed and synthesized. Both compounds can form stable two-component gels in n-propanol or n-butanol upon addition of α-cyclodextrin (α-CD) followed by sonication at room temperature. Interestingly, the 1a/α-CD gel is thixotropic and very sensitive to water. Addition of a small amount of water induces rapid gel collapse, allowing further development of the gel as a visual relative humidity sensor. Specificity of the sensor has been confirmed using several approaches, such as scanning electron microscopy and fluorescence, Fourier transform infrared, and ¹H NMR spectroscopy experiments. The results show that α-CD acts as a junction for the assembly of 1a or 1b through hydrogen bonding between hydroxyl and amide groups. Upon addition of water, α-CD interacts with the adamantane group of 1a via an incomplete host-guest encapsulation, resulting in the dissociation of the hydrogen-bonding-assisted two-component assembly, accompanied by gel collapse.

Synthesis and structural characterization of electrochemically reversible bisferrocenes containing bis(acyl-thiourea)s: enantiomers and conformers

Enantiomeric and conformational isomers of chiral bisferrocenyl-modified bis(acyl-thiourea)s; their crystal packing and electrochemically reversible redox reaction properties.

Coordination Behaviour of 1-(4,2′:6′,4′′-terpyridin-4′-yl)ferrocene and 1-(3,2′:6′,3′′-terpyridin-4′-yl)ferrocene: Predictable and Unpredictable Assembly Algorithms

The reaction of 1-(4,2′:6′,4″-terpyridin-4′-yl)ferrocene (2) with ZnI2 leads to [{ZnI2(2)}4·1.4MeOH·0.8H2O] which contains a discrete [4+4] metallocycle. Crystal growth experiments demonstrate that reactions of 2 with Zn(OAc)2 or CuCl2 result in the formation of single- or double-stranded 1D polymer chains, respectively, the latter facilitated by the formation of {Cu2Cl4} dinuclear nodes. While both 2 and its isomer 1-(3,2′:6′,3″-terpyridin-4′-yl)ferrocene (3) present V-shaped donor sets, rotation about interannular bonds in 3 generates flexible vectorial properties associated with limiting convergent and divergent orientations of the nitrogen donors. The synthesis and characterisation of 3 are described as are reactions of 3 with ZnCl2 or ZnBr2 which lead, respectively, to a metallosquare in [{ZnCl2(3)}4·3CHCl3·3MeOH] or a helical polymer in [{ZnBr2(3)}·MeOH]n. The tight pitch of the helix in the latter (8.7879(9) Å) is controlled by a combination of the orientations of the N,N″-donor sets in 3, and intra-chain π-stacking interactions involving ferrocenyl and pyridine units.

Molecular packing and the handedness of the self-assemblies of C17H35CO-Ala-Phe sodium salts

Molecular packing structure dominates the handedness of the self-assemblies of a series of lipodipeptide sodium salts.

Carbon-Nanotube-Mediated Electrochemical Transition in a Redox-Active Supramolecular Hydrogel Derived from Viologen and an l-Alanine-Based Amphiphile

A two-component hydrogelator (16-A)2 -V(2+) , comprising an l-alanine-based amphiphile (16-A) and a redox-active viologen based partner (V(2+) ), is reported. The formation the hydrogel depended, not only on the acid-to-amine stoichiometric ratio, but on the choice of the l-amino acid group and also on the hydrocarbon chain length of the amphiphilic component. The redox responsive property and the electrochemical behavior of this two-component system were further examined by step-wise chemical and electrochemical reduction of the viologen nucleus (V(2+) /V(+) and V(+) /V(0) ). The half-wave reduction potentials (E1/2 ) associated with the viologen ring shifted to more negative values with increasing amine component. This indicates that higher extent of salt formation hinders reduction of the viologen moiety. Interestingly, the incorporation of single-walled carbon nanotubes in the electrochemically irreversible hydrogel (16-A)2 -V(2+) transformed it into a quasi-reversible electrochemical system.

Ultrasound-accelerated organogel: application for visual discrimination of Hg2+ from Ag+

The organogelator TN was able to selectively sense Hg²⁺ and Ag⁺via fluorogenic and chromogenic signal outputs; the gel of TN could be further developed to discriminate Hg²⁺ from Ag⁺via visual changes.

Selective and visual Ca(2+) ion recognition in solution and in a self-assembly organogel of the terpyridine-based derivative triggered by ultrasound

A new kind of terpyridine-based Ca(2+) sensor TS was designed and studied based on the internal charge transfer (ICT). In the diluted solution state, TS sensed Ca(2+) and Mg(2+) ions among test ions via an "off-on" approach as seen from fluorescence spectra of test ions. Moreover, TS was able to form stable fluorescent gels in organic solvents accelerated by ultrasound, indicating the ultrasound responsive properties of TS molecules. The S-gel of TS could be successfully used to selectively recognize Ca(2+) through fluorescent emission color and morphological changes, which was different from that of the solution state. It was predicated that the competition between the self-assembly of TS molecules and the host–guest interaction of TS with Ca(2+) or Mg(2+) was responsible for the sensing properties. To the best of our knowledge, this is the first example that organogels could selectively sense Ca2+ ions.