Reactivity of Single-Walled Carbon Nanotubes in the Diels-Alder Cycloaddition Reaction: Distortion-Interaction Analysis along the Reaction Pathway

BhrPETase catalyzed polyethylene terephthalate depolymerization: A quantum mechanics/molecular mechanics approach

Polyethylene terephthalate (PET) is a widely used material in our daily life, particularly in areas such as packaging, fibers, and engineering plastics. However, PET waste can accumulate in the environment and pose a great threat to our ecosystem. Recently enzymatic conversion has emerged as an efficient and green strategy to address the PET crisis. Here, using a theoretical approach combining molecular dynamics simulation and quantum mechanics/molecular mechanics calculations, the depolymerization mechanism of the thermophilic cutinase BhrPETase was fully deciphered. Surprisingly, unlike the previously studied cutinase LCCICCG, our results indicate that the first step, catalytic triad assisted nucleophilic attack, is the rate-determining step. The corresponding Boltzmann weighted average energy barrier is 18.2 kcal/mol. Through extensive comparison between BhrPETase and LCCICCG, we evidence that key features like charge CHis@N1 and angle APET@C1-Ser@O1-His@H1 significantly impact the depolymerization efficiency of BhrPETase. Non-covalent bond interaction and distortion/interaction analysis inform new insights on enzyme engineer and may aid the recycling of enzymatic PET waste. This study will aid the advancement of the plastic bio-recycling economy and promote resource conservation and reuse.

A Microwave-Assisted, Solvent-Free Approach for the Versatile Functionalization of Carbon Nanotubes

While the functionalization of carbon nanotubes (CNTs) has attracted extensive interest for a wide range of applications, a facial and versatile strategy remains in demand. Here, we report a microwave-assisted, solvent-free approach to directly functionalize CNTs both in raw form and in arbitrary macroscopic assemblies. Rapid microwave irradiation was applied to generate active sites on the CNTs while not inducing excessive damage to the graphitic network, and a gas-phase deposition afforded controllable grafting for thorough or regioselective functionalization. Using methyl methacrylate (MMA) as a model functional group and a CNT sponge as a model assembly, homogeneous grafting was exhibited by the increased robust hydrophobicity (contact angle increase from 30 to 140°) and improved structural stability (compressive modulus increased by 135%). Therefore, when our MMA-functionalized CNTs served as a solar absorber for saline distillation, high operating stability with a superior water evaporation rate of ∼2.6 kg m^-2 h^-1 was observed. Finally, to highlight the efficacy and versatility of this functionalization approach, we fabricated asymmetrically hydrophobic CNT sponges by regioselective functionalization to serve as a moisture-driven generator, which demonstrated a stable open-circuit voltage of 0.6 mV. This versatile, solvent-free approach can complement conventional solution-based techniques in the design and fabrication of multifunctional nanocarbon-based materials.

Computational biotransformation of polyethylene terephthalate by depolymerase: A QM/MM approach

Despite increasing environmental concerns on ever-lasting Polyethylene Terephthalate (PET), its global production is continuously growing. Effective strategies that can completely remove PET from environment are urgently desired. Here biotransformation processes of PET by one of the most effective enzymes, leaf-branch compost cutinase (LCC), were systematically explored with Molecular Dynamics and Quantum Mechanics/Molecular Mechanics approaches. We found that four concerted steps are required to complete the whole catalytic cycle. The last concerted step, deacylation, was determined as the rate-determining step with Boltzmann-weighted average barrier of 13.6 kcal/mol and arithmetic average of 16.1 ± 2.9 kcal/mol. Interestingly, unprecedented fluctuations of hydrogen bond length during LCC catalyzed transformation process toward PET were found. This fluctuation was also observed in enzyme IsPETase, indicating that it may widely exist in other catalytic triad (Ser-His-Asp) containing enzymes as well. In addition, possible features (bond, angle, dihedral angle and charge) that influence the catalytic reaction were identified and correlations between activation energies and key features were established. Our results present new insights into catalytic mechanism of hydrolases and shed light on the efficient recycling of the ever-lasting PET.

Carbene-enabled ether activation through the formation of oxonium: a theoretical view

Here, we report a theoretical investigation of the reactivity and chemoselectivity of carbene-enabled ether activation.

[2π + 2π] Photocycloaddition of Enones to Single-Walled Carbon Nanotubes Creates Fluorescent Quantum Defects

Single-walled carbon nanotubes (SWCNTs) have been widely applied in biomedical fields such as drug delivery, biosensing, bioimaging, and tissue engineering. Understanding their reactivity with biomolecules is important for these applications. We describe here a photoinduced cycloaddition reaction between enones and SWCNTs. By creating covalent and tunable sp³ defects in the sp² carbon lattice of SWCNTs through [2π + 2π] photocycloaddition, a bright red-shifted photoluminescence was gradually generated. The photocycloaddition functionalization was demonstrated with various organic molecules bearing an enone functional group, including biologically important oxygenated lipid metabolites. The mechanism of this reaction was studied empirically and using computational methods. Density functional theory calculations were employed to elucidate the identity of the reaction product and understand the origin of different substrate reactivities. The results of this study can enable engineering of the optical and electronic properties of semiconducting SWCNTs and provide understanding into their interactions with the lipid biocorona.

Mechanistic insights into the rhodium–copper cascade catalyzed dual C–H annulation of indoles

Density functional theory (DFT) calculations have been performed to provide mechanistic insight into the Rh/Cu co-catalyzed multicomponent annulation of indoles, diazo compounds, and α,β-unsaturated esters.

Mechanistic Study on Palladium-Catalyzed Regioselective Oxidative Amination: Roles of Ammonium Salts

Anti-Markovnikov selective oxidative amination reaction with simple alkenes is particularly promising but challenging because of the inherent electronic effect of the alkene substrate which is in favor of the Markovnikov product. In a recently reported Pd-catalyzed anti-Markovnikov oxidative amination reaction, the addition of quaternary ammonium salts is shown to be critical. We performed a comprehensive DFT study to elucidate the reaction mechanism and the origin of the regioselectivity, as well as the roles of the ammonium salts. Our results show that without and with the ammonium salts the reaction mechanisms are different. Detailed analyses indicate that the steric effects account for the switch of regioselectivity. The roles of the quaternary ammonium salts have been elucidated: (1) Me₄NOAc plays the role of base in deprotonating the phthalimide and allows the reaction to proceed through a trans-aminopalladation mechanism; (2) Me₄NCl facilitates the thermodynamically favorable transformation of Pd(OAc)₂ to the palladate ([Pd(AcO)₂Cl₂]^2-), which lessens the polarity of the carbon-carbon double bond, minimizes the inherent electronic effects, and leads to a steric-effect-controlled reaction; (3) Me₄NCl is essential in decreasing the activation barrier in the rate-determining ligand exchange step by Cl^- acting as a better leaving group (compared to AcO^-).

Understanding the reactivity of polycyclic aromatic hydrocarbons and related compounds

This perspective article summarizes recent applications of the combination of the activation strain model of reactivity and the energy decomposition analysis methods to the study of the reactivity of polycyclic aromatic hydrocarbons and related compounds such as cycloparaphenylenes, fullerenes and doped systems. To this end, we have selected representative examples to highlight the usefulness of this relatively novel computational approach to gain quantitative insight into the factors controlling the so far not fully understood reactivity of these species. Issues such as the influence of the size and curvature of the system on the reactivity are covered herein, which is crucial for the rational design of novel compounds with tuneable applications in different fields such as materials science or medicinal chemistry.

Prediction of the [4 + 2]- and [5 + 4]-cycloaddition reactions in zig-zag carbon nanotubes via an ambimodal transition state: density functional theory calculations

A unique type of chemical reaction known as an ambimodal reaction has drawn tremendous attention owing to its intriguing feature of forming multiple (two or more) products from the same (single) transition state. In contrast to conventional reactions, bifurcation of the potential energy surface takes place in ambimodal reactions. Density functional theory (DFT) based calculations were performed to probe the Diels–Alder (DA) cycloaddition reactions of various carbon nanotubes (CNTs) with 1,3-butadiene. The present investigation reveals the possibility of ambimodal transition state formation on a potential energy surface (PES) corresponding to an unusual [5 + 4]-cycloadduct along with the conventional [4 + 2]-cycloadduct. The ground state of the [5 + 4]-cycloadduct obtained from butadiene and the H-terminated CNTs is a triplet (³T) state, but on the other hand the [4 + 2]-cycloadduct is a singlet (¹S) state. The [5 + 4]-adduct is energetically more stable in comparison with the [4 + 2]-adduct. The possibility of the formation of the [5 + 4]-adduct is validated using frontier molecular orbitals. The length of the nanotube significantly influences the overall kinetics and thermodynamics of the reaction.

A DFT study has been performed to unveil the ambimodal reaction in H-terminated CNTs.

Direct synthesis of indenes via a rhodium-catalyzed multicomponent Csp2-H annulation reaction

A highly efficient, direct and multicomponent route for the synthesis of indenes is reported herein. This process is catalyzed by a rhodium(iii) complex and conducted under very mild conditions, making the overall process atom and step-economical. DFT mechanistic studies were performed to explore the mechanism of this reaction system.

Reactivity and regioselectivity in Diels-Alder reactions of anion encapsulated fullerenes

Encapsulation and surface chemical modification are methodologies to enhance the properties of fullerenes for various applications. Herein, density functional theory calculations are performed to study the Diels-Alder (DA) reactivity of anion encapsulated C₆₀, including [X@C₆₀]^- (X = F, Cl, Br, or I), [S@C₆₀]^2-, and [N@C₆₀]^3-. Computational results reveal that encapsulated Cl^-, Br^-, I^-, or S^2- anions are located close to the center of the C₆₀ molecule; however, encapsulated F^- is displaced from the center. Encapsulated N^3- bonds to the inner surface of the carbon cage, which leads to a negative charge transfer to the C₆₀. In [N@C₆₀]^3-, C-C bonds near to the encapsulated N atom are more reactive. Our calculations reveal that encapsulated halogen or S anions decrease the DA reactivity because of the stronger closed-shell repulsion of the encapsulated anion. However, encapsulated N^3- increases the DA reactivity. The higher distortion energy of the halogen- or S^2--anion encapsulated C₆₀ leads to lower reactivity of the 6-5 bond. Opposite regioselectivity of the DA reaction with [N@C₆₀]^3- is attributed to distortion energy of the cyclopentadiene (CPD) moiety. The asymmetrical transition state geometry leads to a lower distortion energy of the CPD moiety.