1
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Wei H, Zhang Y, Jin S, Yu Y, Chen N, Xu J, Yang Z. PyBox-La(OTf) 3-Catalyzed Enantioselective Diels-Alder Cycloadditions of 2-Alkenoylpyridines with Cyclopentadiene. Molecules 2024; 29:2978. [PMID: 38998930 PMCID: PMC11243330 DOI: 10.3390/molecules29132978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/19/2024] [Accepted: 06/19/2024] [Indexed: 07/14/2024] Open
Abstract
The PyBox-La(OTf)3-catalyzed enantioselective Diels-Alder cycloaddition of 2-alk-2-enoylpyridines with cyclopentadiene is realized, producing enantiopure disubstituted norbornenes, which possess four contiguous stereocenters and are biologically relevant structures in up to 92:8 dr and 99:1 er.
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Affiliation(s)
- Hao Wei
- Department of Organic Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, China
| | - Yujie Zhang
- Department of Organic Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, China
| | - Sanlin Jin
- Department of Organic Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, China
| | - Ying Yu
- China United Test & Certification Co., Ltd., Beijing 100088, China
| | - Ning Chen
- Department of Organic Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, China
| | - Jiaxi Xu
- Department of Organic Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, China
| | - Zhanhui Yang
- Department of Organic Chemistry, College of Chemistry, Beijing University of Chemical Technology, Beijing 100029, China
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2
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Duchemin N, Aubert S, de Souza JV, Bethge L, Vonhoff S, Bronowska AK, Smietana M, Arseniyadis S. New Benchmark in DNA-Based Asymmetric Catalysis: Prevalence of Modified DNA/RNA Hybrid Systems. JACS AU 2022; 2:1910-1917. [PMID: 36032523 PMCID: PMC9400053 DOI: 10.1021/jacsau.2c00271] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 06/27/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Abstract
By harnessing the chirality of the DNA double helix, chemists have been able to obtain new, reliable, selective, and environmentally friendly biohybrid catalytic systems with tailor-made functions. Nonetheless, despite all the advances made throughout the years in the field of DNA-based asymmetric catalysis, many challenges still remain to be faced, in particular when it comes to designing a "universal" catalyst with broad reactivity and unprecedented selectivity. Rational design and rounds of selection have allowed us to approach this goal. We report here the development of a DNA/RNA hybrid catalytic system featuring a covalently attached bipyridine ligand, which exhibits unmatched levels of selectivity throughout the current DNA toolbox and opens new avenues in asymmetric catalysis.
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Affiliation(s)
- Nicolas Duchemin
- Queen
Mary University of London, Department of Chemistry, Mile End Road, London E1 4NS, United
Kingdom
- NOXXON
Pharma AG, Max-Dohrn-Strasse 8-10, Berlin 10589, Germany
| | - Sidonie Aubert
- Queen
Mary University of London, Department of Chemistry, Mile End Road, London E1 4NS, United
Kingdom
| | - João V. de Souza
- Chemistry−School
of Natural and Environmental Sciences, Newcastle
University, Newcastle NE1 7RU, United Kingdom
| | - Lucas Bethge
- NOXXON
Pharma AG, Max-Dohrn-Strasse 8-10, Berlin 10589, Germany
| | - Stefan Vonhoff
- NOXXON
Pharma AG, Max-Dohrn-Strasse 8-10, Berlin 10589, Germany
| | - Agnieszka K. Bronowska
- Chemistry−School
of Natural and Environmental Sciences, Newcastle
University, Newcastle NE1 7RU, United Kingdom
| | - Michael Smietana
- Institut
des Biomolécules Max Mousseron, Université
de Montpellier, CNRS, ENSCM, 1919 Route de Mende, Montpellier 34095, France
| | - Stellios Arseniyadis
- Queen
Mary University of London, Department of Chemistry, Mile End Road, London E1 4NS, United
Kingdom
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3
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Chen Z, Zhou P, Guo Y, Anna, Bai J, Qiao R, Li C. Guanosine Borate Hydrogel and Self-Assembled Nanostructures Capable of Enantioselective Aldol Reaction in Water. J Org Chem 2022; 87:2624-2631. [PMID: 35104141 DOI: 10.1021/acs.joc.1c02573] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A guanosine-based hydrogel formed by the self-assembly of guanosine and 4-((l-prolinamide)methyl)phenylboronic acid was constructed. The G quartets were selectively stabilized by K+ ions to form a self-supporting transparent hydrogel. These guanosine-derived assemblies were used to catalyze the aldol reaction in water without any additives, affording desirable conversion and enantioselectivity of the product. The controlled assays of small-molecule components indicated that the stable assemblies were the definite species that achieved high enantioselective catalysis. The current catalytic system can be readily recovered by simple extraction and still acquired good performance of the reaction after four cycles.
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Affiliation(s)
- Zhaohang Chen
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Pengcheng Zhou
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Yuanxia Guo
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Anna
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Jiakun Bai
- Key Laboratory of Magnetic Molecules and Magnetic Information Material, Ministry of Education, College of Chemistry and Material, Shanxi Normal University, Linfen 041004, P. R. China
| | - Renzhong Qiao
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - Chao Li
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing 100029, P. R. China
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4
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Wang C, Qi Q, Li W, Dang J, Hao M, Lv S, Dong X, Gu Y, Wu P, Zhang W, Chen Y, Hartig JS. A Cu(II)-ATP complex efficiently catalyses enantioselective Diels-Alder reactions. Nat Commun 2020; 11:4792. [PMID: 32963238 PMCID: PMC7508818 DOI: 10.1038/s41467-020-18554-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Accepted: 08/26/2020] [Indexed: 11/09/2022] Open
Abstract
Natural biomolecules have been used extensively as chiral scaffolds that bind/surround metal complexes to achieve stereoselectivity in catalytic reactions. ATP is ubiquitously found in nature as an energy-storing molecule and can complex diverse metal cations. However, in biotic reactions ATP-metal complexes are thought to function mostly as co-substrates undergoing phosphoanhydride bond cleavage reactions rather than participating in catalytic mechanisms. Here, we report that a specific Cu(II)-ATP complex (Cu2+·ATP) efficiently catalyses Diels-Alder reactions with high reactivity and enantioselectivity. We investigate the substrates and stereoselectivity of the reaction, characterise the catalyst by a range of physicochemical experiments and propose the reaction mechanism based on density functional theory (DFT) calculations. It is found that three key residues (N7, β-phosphate and γ-phosphate) in ATP are important for the efficient catalytic activity and stereocontrol via complexation of the Cu(II) ion. In addition to the potential technological uses, these findings could have general implications for the chemical selection of complex mixtures in prebiotic scenarios.
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Affiliation(s)
- Changhao Wang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China.
| | - Qianqian Qi
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Wenying Li
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Jingshuang Dang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Min Hao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Shuting Lv
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Xingchen Dong
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Youkun Gu
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Peizhe Wu
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Wenyue Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Yashao Chen
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, China
| | - Jörg S Hartig
- Department of Chemistry and Konstanz Research School Chemical Biology (KoRS-CB), University of Konstanz, Konstanz, Germany
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5
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Qi Q, Lv S, Hao M, Dong X, Gu Y, Wu P, Zhang W, Chen Y, Wang C. An Efficient Cyclic Di-AMP Based Artificial Metalloribozyme for Enantioselective Diels-Alder Reactions. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000652] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Qianqian Qi
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Shuting Lv
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Min Hao
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Xingchen Dong
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Youkun Gu
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Peizhe Wu
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Wenyue Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Yashao Chen
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
| | - Changhao Wang
- Key Laboratory of Applied Surface and Colloid Chemistry; Ministry of Education; School of Chemistry and Chemical Engineering; Shaanxi Normal University; 620 West Chang'an Avenue 710119 Xi'an China
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6
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Dey S, Jäschke A. Covalently Functionalized DNA Duplexes and Quadruplexes as Hybrid Catalysts in an Enantioselective Friedel-Crafts Reaction. Molecules 2020; 25:E3121. [PMID: 32650544 PMCID: PMC7397069 DOI: 10.3390/molecules25143121] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 06/19/2020] [Accepted: 07/02/2020] [Indexed: 12/01/2022] Open
Abstract
The precise site-specific positioning of metal-ligand complexes on various DNA structures through covalent linkages has gained importance in the development of hybrid catalysts for aqueous-phase homogeneous catalysis. Covalently modified double-stranded and G-quadruplex DNA-based hybrid catalysts have been investigated separately. To understand the role of different DNA secondary structures in enantioselective Friedel-Crafts alkylation, a well-known G-quadruplex-forming sequence was covalently modified at different positions. The catalytic performance of this modified DNA strand was studied in the presence and absence of a complementary DNA sequence, resulting in the formation of two different secondary structures, namely duplex and G-quadruplex. Indeed, the secondary structures had a tremendous effect on both the yield and stereoselectivity of the catalyzed reaction. In addition, the position of the modification, the topology of the DNA, the nature of the ligand, and the length of the linker between ligand and DNA were found to modulate the catalytic performance of the hybrid catalysts. Using the optimal linker length, the quadruplexes formed the (-)-enantiomer with up to 65% ee, while the duplex yielded the (+)-enantiomer with up to 62% ee. This study unveils a new and simple way to control the stereochemical outcome of a Friedel-Crafts reaction.
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Affiliation(s)
| | - Andres Jäschke
- Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, 69120 Heidelberg, Germany;
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7
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8
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Wang C, Hao M, Qi Q, Dang J, Dong X, Lv S, Xiong L, Gao H, Jia G, Chen Y, Hartig JS, Li C. Highly Efficient Cyclic Dinucleotide Based Artificial Metalloribozymes for Enantioselective Friedel–Crafts Reactions in Water. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201912962] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Changhao Wang
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Min Hao
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Qianqian Qi
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Jingshuang Dang
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Xingchen Dong
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Shuting Lv
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Ling Xiong
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Huanhuan Gao
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Guoqing Jia
- State Key Laboratory of CatalysisDalian Institute of Chemical PhysicsChinese Academy of Sciences Dalian 116023 China
| | - Yashao Chen
- Key Laboratory of Applied Surface and Colloid ChemistryMinistry of EducationSchool of Chemistry and Chemical EngineeringShaanxi Normal University Xi'an 710119 China
| | - Jörg S. Hartig
- Department of ChemistryKonstanz Research School Chemical Biology (KoRS-CB)University of Konstanz 78457 Konstanz Germany
| | - Can Li
- State Key Laboratory of CatalysisDalian Institute of Chemical PhysicsChinese Academy of Sciences Dalian 116023 China
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9
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Wang C, Hao M, Qi Q, Dang J, Dong X, Lv S, Xiong L, Gao H, Jia G, Chen Y, Hartig JS, Li C. Highly Efficient Cyclic Dinucleotide Based Artificial Metalloribozymes for Enantioselective Friedel-Crafts Reactions in Water. Angew Chem Int Ed Engl 2020; 59:3444-3449. [PMID: 31825550 DOI: 10.1002/anie.201912962] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 11/25/2019] [Indexed: 01/01/2023]
Abstract
The diverse secondary structures of nucleic acids are emerging as attractive chiral scaffolds to construct artificial metalloenzymes (ArMs) for enantioselective catalysis. DNA-based ArMs containing duplex and G-quadruplex scaffolds have been widely investigated, yet RNA-based ArMs are scarce. Here we report that a cyclic dinucleotide of c-di-AMP and Cu2+ ions assemble into an artificial metalloribozyme (c-di-AMP⋅Cu2+ ) that enables catalysis of enantioselective Friedel-Crafts reactions in aqueous media with high reactivity and excellent enantioselectivity of up to 97 % ee. The assembly of c-di-AMP⋅Cu2+ gives rise to a 20-fold rate acceleration compared to Cu2+ ions. Based on various biophysical techniques and density function theory (DFT) calculations, a fine coordination structure of c-di-AMP⋅Cu2+ metalloribozyme is suggested in which two c-di-AMP form a dimer scaffold and the Cu2+ ion is located in the center of an adenine-adenine plane through binding to two N7 nitrogen atoms and one phosphate oxygen atom.
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Affiliation(s)
- Changhao Wang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Min Hao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Qianqian Qi
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Jingshuang Dang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Xingchen Dong
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Shuting Lv
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Ling Xiong
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Huanhuan Gao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Guoqing Jia
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
| | - Yashao Chen
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Jörg S Hartig
- Department of Chemistry, Konstanz Research School Chemical Biology (KoRS-CB), University of Konstanz, 78457, Konstanz, Germany
| | - Can Li
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China
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10
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Wang SD, Zhang RB, Cadet J. Enhanced reactivity of the pyrimidine peroxyl radical towards the C–H bond in duplex DNA – a theoretical study. Org Biomol Chem 2020; 18:3536-3543. [DOI: 10.1039/d0ob00302f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The peroxyl radical exhibits a much stronger reactivity towards C1′–H1′ in duplex DNA with respect to single-stranded DNA.
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Affiliation(s)
- Shu-dong Wang
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing
- China
| | - Ru-bo Zhang
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing
- China
| | - Jean Cadet
- Département de Médecine Nucléaire et Radiobiologie
- Faculté de Médecine
- Université de Sherbrooke
- Sherbrooke
- Canada JIH 5N4
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11
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Insight into Stereo-Induction by Minor Modification in the Ligand in DNA-Based Hybrid Catalysis. Catal Letters 2018. [DOI: 10.1007/s10562-018-2549-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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12
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Probing the interaction of copper cofactor and azachalcone substrate with G-quadruplex of DNA based Diels-Alderase by site-specific fluorescence quenching titration. Biochimie 2018; 146:20-27. [DOI: 10.1016/j.biochi.2017.11.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 11/02/2017] [Indexed: 01/18/2023]
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