Anion Sensing by Fluorescent Expanded Calixpyrroles

Does Larger Cavity-Size Really Help Bigger Anions to Bind? A Scrutiny on Core-Expanded Calix[4]pyrroles and Their Properties

Calix[4]pyrroles are an important class of oligopyrrolic macrocycles and have found applications in many diverse fields including anion recognition. To modulate the properties of the calix[4]pyrrole, several structural modifications are realized. The core-expansion has attracted extra attention as it provides larger cavity-size compared to parent calix[4]pyrrole(s). This review highlights the synthetic development of various core-expanded calix[4]pyrroles and their applications in anion-binding properties. Emphasis is given to the changes in the binding properties observed with expanded versions of calix[4]pyrrole(s) in both solution and the solid states. The expanded versions of calix[4]pyrrole do not always show higher binding affinities for larger anions as anticipated. Rather, they display reduced affinities with the anions. The truncated form or asymmetric nature of the expanded versions of calix[4]pyrrole does not probably allow to access all the available binding sites for the anions and hence reduced binding affinities are observed. The receptors which contain a greater number of binding sites and are somehow rigid or preorganized apparently show enhanced binding affinities for anions. The relative binding constants for halide series indicate that the enlarged molecules are more beneficial for largest iodide among others. However, most of the receptors show selectivity towards smallest fluoride over other anions studied.

Anion binding and transport with meso-alkyl substituted two-armed calix[4]pyrroles bearing urea and hydroxyl groups

Calix[4]pyrroles bearing hydroxyl (1) or urea (3) groups attached to the meso-positions with propyl linkers were synthesized as cis- and trans-isomers. The anion binding properties of cis-1 and cis-3 were screened with ion-mobility mass spectrometry, where cis-1 formed complexes with Cl-, Br- and H2PO4-, whereas cis-3 formed complexes with most of the investigated anions, including Cl-, Br-, I-, NO3-, ClO4-, OTf-, SCN- and PF6-. The structures of the chloride complexes were further elucidated with density functional theory calculations and a crystal structure obtained for cis-1. In solution, chloride and dihydrogenphosphate anion binding with cis-1 and cis-3 were compared using 1H NMR titrations. To assess the suitability of two-armed calix[4]pyrroles as anion transporters, chloride transport studies of cis-1, cis-3 and trans-3 were performed using large unilamellar vesicles. The results revealed that cis-3 had the highest activity among the investigated calix[4]pyrroles, which was related to the improved affinity and isolation of chloride inside the binding cavity of cis-3 in comparison to cis-1. The results indicate that appending calix[4]pyrroles with two hydrogen bonding arms is a feasible strategy to obtain anion transporters and receptors with high anion affinity.

Solution Studies of a Water-Stable, Trivalent Antimony Pnictogen Bonding Anion Receptor with High Binding Affinities for CN-, OCN-, and OAc. Inorg Chem 2023. [PMID: 37499143 DOI: 10.1021/acs.inorgchem.3c01887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0]

The solution phase anion binding behavior of a water-stable bidentate pnictogen bond donor was studied. A modest change in the visible absorption spectrum allowed for the determination of the binding constants. High binding constants were observed with cyanide, cyanate, and acetate, and these were corroborated with density functional theory (DFT) calculations. The receptor could be recovered free from the anion following treatment with methyl triflate, confirming that it remains intact. The tight binding of cyanide and water stability were exploited to use this system as a supramolecular catalyst in a phase-transfer Strecker reaction, further demonstrating the utility of pnictogen bonding as a tool in noncovalent catalysis.

Fluorescent cyclophanes and their applications

With the serendipitous discovery of crown ethers by Pedersen more than half a century ago and the subsequent introduction of host-guest chemistry and supramolecular chemistry by Cram and Lehn, respectively, followed by the design and synthesis of wholly synthetic cyclophanes-in particular, fluorescent cyclophanes, having rich structural characteristics and functions-have been the focus of considerable research activity during the past few decades. Cyclophanes with remarkable emissive properties have been investigated continuously over the years and employed in numerous applications across the field of science and technology. In this Review, we feature the recent developments in the chemistry of fluorescent cyclophanes, along with their design and synthesis. Their host-guest chemistry and applications related to their structure and properties are highlighted.

Polyamine receptors containing anthracene as fluorescent probes for ketoprofen in H2O/EtOH solution

Triamine receptors containing anthracene units are able to bind and sense ketoprofen via fluorescence enhancement in a H₂O/EtOH 50 : 50 (Vol : Vol) mixture exploiting their protonation features, which are tuned by the interaction with the analyte.

Nickel(II) monobenzoporphyrins and chlorins: synthesis, electrochemistry and anion sensing properties

A series of nickel(II) monobenzochlorins (MBCs) and monobenzoporphyrins (MBPs) containing β-appended or meso,β-fused indanedione (IND) or malononitrile (MN) groups were synthesized and characterized for their physicochemical, electrochemical and anion sensing properties. Each investigated compound contained four meso-phenyl rings and a single β,β'-fused 4,5-di(methoxycarbonyl)benzene ring, with the chlorins represented as NiMBC(Y)₂(R)₄ and the porphyrins as NiMBP(Y^F)₂, where Y is an indanedione (IND) or malononitrile (MN) group, R = H or Br and Y^F is a meso,β-fused IND or MN substituent. One of the investigated compounds, NiMBP(IND)₂, was structurally characterized and shown to possess a ruffled macrocyclic conformation. The monobenzochlorins, NiMBC(IND)₂, NiMBC(IND)₂Br₄ and NiMBC(MN)₂, reversibly respond to basic anions such as CN^-, F^-, OAc^- and H₂PO₄^- through a visible color change assigned to the deprotonation of the vicinal proton on the appended IND or MN substituents. The malononitrile-fused Ni^II monobenzoporphyrin, NiMBP(MN)₂, exhibited a selective but irreversible visual detection of cyanide ions (LOD = 2.23 ppm). This reaction afforded a tri-fused π-extended monobenzoporphyrin product represented as NiMBP(VCN)₂ (where VCN = meso,β-fused vinyl cyanide) in non-aqueous media and proceeded via anion induced electron transfer (AIET). The in situ generated π-extended porphyrin was also isolated and characterized as to its physicochemical and electrochemical properties and found to possess a narrow electrochemical HOMO-LUMO gap of 1.46 V along with a near-IR (NIR) absorption band located at 861 nm.

1,2-Phenylene-Incorporated Smallest Expanded Calix[4]pyrrole via One-Step Synthesis of Tetrapyrrane: A Fluorescent Host for Fluoride Ion

Synthesis of tetrapyrrane 8 from acetone and pyrrole via one-step condensation was achieved for the first time along with a much-improved yield of the tripyrrane 9. Diborylation of the tetrapyrrane and subsequent "1 + 1" cyclocoupling with 1,2-diiodobenzene following the Suzuki protocol generated novel o-phenylene incorporated macrocycle belonging to the smallest meso-expanded calix[4]pyrrole family. The latter macrocycle displays exclusive turn-on fluorescence sensing of fluoride ion upon complexation via a unique partial cone conformation supported by DFT analysis in acetonitrile solvent.

A Fluorescence Sensor Array Based on Zinc(II)-Carboxyamidoquinolines: Toward Quantitative Detection of ATP*

The newly prepared fluorescent carboxyamidoquinolines (1-3) and their Zn(II) complexes (Zn@1-Zn@3) were used to bind and sense various phosphate anions utilizing a relay mechanism, in which the Zn(II) ion migrates from the Zn@1-Zn@3 complexes to the phosphate, namely adenosine 5'-triphosphate (ATP) and pyrophosphate (PPi), a process accompanied by a dramatic change in fluorescence. Zn@1-Zn@3 assemblies interact with adenine nucleotide phosphates while displaying an analyte-specific response. This process was investigated using UV-vis, fluorescence, and NMR spectroscopy. It is shown that the different binding selectivity and the corresponding fluorescence response enable differentiation of adenosine 5'-triphosphate (ATP), adenosine 5'-diphosphate (ADP), pyrophosphate (PPi), and phosphate (Pi). The cross-reactive nature of the carboxyamidoquinolines-Zn(II) sensors in conjunction with linear discriminant analysis (LDA) was utilized in a simple fluorescence chemosensor array that allows for the identification of ATP, ADP, PPi, and Pi from 8 other anions including adenosine 5'-monophosphate (AMP) with 100 % correct classification. Furthermore, the support vector machine algorithm, a machine learning method, allowed for highly accurate quantitation of ATP in the range of 5-100 μM concentration in unknown samples with error <2.5 %.

Supramolecular Fluorescent Sensors: An Historical Overview and Update

Since as early as 1867, molecular sensors have been recognized as being intelligent "devices" capable of addressing a variety of issues related to our environment and health (e.g., the detection of toxic pollutants or disease-related biomarkers). In this review, we focus on fluorescence-based sensors that incorporate supramolecular chemistry to achieve a desired sensing outcome. The goal is to provide an illustrative overview, rather than a comprehensive listing of all that has been done in the field. We will thus summarize early work devoted to the development of supramolecular fluorescent sensors and provide an update on recent advances in the area (mostly from 2018 onward). A particular emphasis will be placed on design strategies that may be exploited for analyte sensing and corresponding molecular platforms. Supramolecular approaches considered include, inter alia, binding-based sensing (BBS) and indicator displacement assays (IDAs). Because it has traditionally received less treatment, many of the illustrative examples chosen will involve anion sensing. Finally, this review will also include our perspectives on the future directions of the field.

Friedel–Crafts acylation of antiaromatic norcorroles: electronic and steric modulation of the paratropic current

The first ever Friedel–Crafts acylation of an antiaromatic macrocycle was performed for norcorrolatonickel(ii) reacting with aromatic or aliphatic carboxylic acid chlorides in the presence of AlCl₃.

Optical sensing of anions by macrocyclic and interlocked hosts

This review summarises recent developments in the use of macrocyclic and mechanically-interlocked host molecules as optical sensors for anions.

Molecular recognition and sensing of dicarboxylates and dicarboxylic acids

The recognition and detection of dicarboxylic acids and dicarboxylates is of significance for a wide variety of applications, including medical diagnosis, monitoring of health and of environmental contaminants, and in industry. Hence small molecule receptors and sensors for dicarboxylic acids and dicarboxylates have great potential for applications in these fields. This review outlines the challenges faced in the recognition and detection of these species, strategies that have been used to obtain effective and observable interactions with dicarboxylic acids and dicarboxylates, and progress made in this field in the period from 2014 to 2020.

Conformationally adaptable macrocyclic receptors for ditopic anions: analysis of chelate cooperativity in aqueous containing media

The effect of chelate cooperativity on the binding of several ditopic anions to two tetrathiourea macrocycles has been analysed in competitive solvent mixtures (H2O : DMSO 1 : 9 v/v). The semi-flexible receptors bind dicarboxylates with high affinity dependent on the length and flexibility of the guest. Chemical double mutant cycle (DMC) analysis allowed the chelate cooperativity effects to be measured in detail and revealed both positive and negative cooperativity effects which were dependent on guest size, flexibility and spacer interactions between guest and macrocycle. 1H NMR and crystallographic studies confirmed the macrocycle hosts are adaptable, changing conformation to match their pore size to a selected guest.

Functional Single-Walled Carbon Nanotubes for Anion Sensing

We report an anion-sensing platform wherein conductance changes are triggered by chemical interactions between selectors and anions. The selector design incorporates both a cationic moiety (i.e., pyridinium) and a thiourea-based dual-hydrogen-bond donor. Anion binding by a model selector (2) was studied using ¹H NMR and UV-vis titrations, which reveal a binding strength toward acetate ions (AcO^-) followed by Cl^- > Br^- > NO₃^-. These studies reveal that selector 2 is deprotonated upon addition of AcO^-, whereas it undergoes hydrogen bonding associated with Cl^-, Br^-, and NO₃^-. The cationic pyridinium moiety improves anion binding affinity by lowering the pK_a value of selector 2 and enhancing the hydrogen-bond donor capability as confirmed by spectroscopic titrations and DFT calculations. The selector is covalently attached to poly(4-vinylpyridine) (P4VP), which wraps single-walled carbon nanotubes (SWCNTs) (i.e., P4VP-2-SWCNT) to transduce an electrical signal. As a result, continuous anion sensing was achieved with high sensitivity represented by a normalized resistance change of 101.9 ± 10.3% toward 16.7 mM AcO^-, whereas negligible sensitivity was observed toward Cl^-, Br^-, and NO₃^-. The sensitivity transition was attributed to the internal charge transfer of 2 by deprotonation of the thiourea proton upon addition of AcO^-.

N-Confused Porphyrin - A Unique "Turn-On" Chemosensor for CN- and F- ions and "Turn-Off" Sensor for ClO4 - ions

N-Confused meso-tetrakis(4-carbomethoxyphenyl)porphyrin (1) and its Ni(II) complex (1 a) have been synthesized and utilized for anion sensing studies, and the results are compared with N-confused meso-tetraphenylporphyrin (NCTPP). Anion susceptibilities of 1 and 1 a were investigated using spectroscopic, electrochemical, and DFT studies. Porphyrins 1 and 1 a were able to detect CN^- , F^- , and ClO₄ ^- ions selectively over the tested set of anions even at ppm level. Interestingly, the addition of ClO₄ ^- ions resulted in fluorescence quenching (turn off) whereas the addition of F^- or CN^- resulted in fluorescence enhancement (turn on). Notably, the TFA addition resulted in fluorescence quenching, whereas the fluorescence enhancement was observed while adding TBAOH. The higher association constant (K_a ) values with anions, lower detection limit, and shifts in redox potentials are due to the electron-withdrawing effect of the -COOCH₃ group at the para-position of the meso-phenyl ring. This electron-withdrawing nature is crucial for the higher affinity towards anions. The anion sensing description in this article may not only unveil the built-in nature of N-confused porphyrins, but may also provide a general proposal for the development of novel anion sensors based on porphyrinoids. The electron-deficient porphyrin framework, large polarisable π-system, and anion binding through the outer NH or a combination of the above factors serve as a foundation for N-confused porphyrin to act as an anion sensor.

Optical Fingerprints of Proteases and Their Inhibited Complexes Provided by Differential Cross-Reactivity of Fluorophore-Labeled Single-Stranded DNA

The detection of proteases and their complexes with inhibitor proteins is of great importance for diagnosis and medical-treatment applications. In this study, we report a fingerprint-based sensor using an array of single-stranded DNAs (ssDNAs) labeled with environment-responsive 3'-carboxytetramethylrhodamine (TAMRA) for the identification of proteases. Four TAMRA-modified ssDNAs with different sequences solubilized in two different buffer solutions were incorporated in an array that was capable of generating fluorescent fingerprints unique to the proteases through diverse cross-reactive interactions, allowing the discrimination of (i) 8 proteases and (ii) 12 different mixtures of trypsin and its inhibitor protein (α₁-antitrypsin) by multivariate analysis. Constructing an array with TAMRA-modified DNA aptamers that bind to different sites of human thrombin provides fluorescence fingerprints that reflect a reduction of the exposed surface area of thrombin upon complexation with antithrombin III, even in the presence of human serum. We finally demonstrate the potential of hybridization with complementary DNAs as an effective means to easily double the fingerprint information for proteases. Our approach based on the cross-reactive capability of ssDNAs enables high-throughput fingerprint-based sensing that can be flexibly designed and easily constructed, not only for the identification of a variety of proteins including proteases but also for the evaluation of their complexation ability.

Knock-on synthesis of tritopic calix[4]pyrrole host for enhanced anion interactions

Interactions of anionic guests with a tritopic peripherally functionalized conjugated calix[4]pyrrole host (1) prepared using a regioselective synthetic method is reported. The regioselectivity of synthesis relies on selective N-alkylation of the calix[4]pyrrole caused by peripheral substitution of one pyrrole group with subsequent N-alkylation at the opposing pyrrole group termed by us 'knock-on' regioselectivity. The resulting host molecule exhibits anion interactions with common chloride and nitrate anions enhanced by an order of magnitude over the parent conjugated calix[4]pyrrole. Combined analysis of ¹H NMR and UV-vis spectroscopic titration data enabled an evaluation of binding strengths of anions with the host K_A in a binding model where the salt dissociation process is also incorporated in the form of its dissociation constant K_d. Anions could be classified as two types based on their interactions with 1: Type A anions (chloride, nitrate, perchlorate, hydrogensulphate) associate as 1 : 1 complexes through hydrogen bonding while interactions involving Type B anions (acetate, fluoride, dihydrogenphosphate) are complicated by host deprotonation and/or countercation association. Hosts based on rim-functionalized calix[4]pyrroles such as 1 represent a promising new family of chromophores for estimation of biologically relevant anions or other species.

Reaction of antiaromatic porphyrinoid with active methylene compounds

Antiaromatic norcorrolatonickel(ii) reacts regioselectively under basic conditions with active methylene compounds, yielding mono-substituted derivatives in which spectroscopic and redox properties of the starting macrocycle are retained.

Calix[5]phyrin for Fluoride Ion Sensing with Visible and Near Infrared Optical Responses

Fluoride (F- ) ion sensing is an important topic due to its roles in health, medical, and environmental sciences. In this regard, colorimetric sensors with a near infrared (NIR) optical response are useful in biological systems because they can avoid interference from endogenous chromophores. Although calix[n]phyrins are highly attractive as sensors with the NIR optical response, studies on calix[n]phyrins are still limited owing to their intrinsic instability against ambient light and air. In this study, we report the synthesis and characterization of a new calix[5]phyrin bearing one sp3 -hybridized carbon atom as a π-expanded calix[n]phyrin. Upon addition of tetrabutylammonium fluoride, the calix[5]phyrin exhibited distinct NIR absorptions at 908 and 1064 nm as well as a visible color change. Importantly, it revealed an excellent selectivity for F- ion. These results demonstrate that calix[5]phyrins are promising colorimetric and NIR sensors of F- ion.