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Du DX, Khang NHD, Tri NH, Nam PC, Thong NM. Exploring the Multitarget Activity of Wedelolactone against Alzheimer's Disease: Insights from In Silico Study. ACS OMEGA 2023; 8:15031-15040. [PMID: 37151498 PMCID: PMC10157682 DOI: 10.1021/acsomega.2c08014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 04/07/2023] [Indexed: 05/09/2023]
Abstract
In this study, Wedelolactone's multitarget activity against Alzheimer's disease was examined using density functional theory and molecular docking techniques. At physiological pH, the pK a and molar fractions have been estimated. The most likely relative rate constants of two radical scavenger mechanisms are formal hydrogen transfer in a lipid environment and single-electron transfer in a water solvent. Compared to Trolox (k overall = 8.96 × 104 M-1 s-1), Wedelolactone (k overall = 4.26 × 109 M-1 s-1) is more efficient in scavenging the HOO• radical in an aqueous environment. The chelation capacity of metals was investigated by examining the complexation of the Cu(II) ion at various coordination positions and calculating the complexation kinetic constants. Furthermore, molecular docking simulations showed that the known forms of Wedelolactone at physiological pH effectively inhibited the AChE and BChE enzymes by comparing their activity to that of tacrine (control). Wedelolactone is a promising drug candidate for Alzheimer's disease therapy in light of these findings.
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Affiliation(s)
- Dang Xuan Du
- Sai
Gon University, 273 An Duong Vuong Street, Ho Chi Minh 700000, Vietnam
| | | | - Nguyen Huu Tri
- Sai
Gon University, 273 An Duong Vuong Street, Ho Chi Minh 700000, Vietnam
| | - Pham Cam Nam
- The
University of Danang - University of Science and Technology, Danang 550000, Vietnam
| | - Nguyen Minh Thong
- The
University of Danang - Campus in Kon Tum, 704 Phan Dinh Phung, Kon
Tum 580000, Vietnam
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2
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Kumar M, Chhillar B, Verma D, Nain S, Singh VP. Introduction of Methyl Group in Substituted Isoselenazolones: Catalytic and Mechanistic Study. J Org Chem 2023; 88:4273-4285. [PMID: 36930142 DOI: 10.1021/acs.joc.2c02831] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Abstract
Copper-catalyzed direct selenation of substituted 2-bromo-N-phenylbenzamide substrates with elemental selenium powder provided a series of methoxy-substituted isoselenazolones via the C-Se and Se-N bond formations. Phenolic substituted isoselenazolones have been obtained by O-demethylation of the corresponding methoxy-substituted analogues using boron tribromide. Some isoselenazolones have been structurally characterized by X-ray single-crystal analysis. The glutathione peroxidase (GPx)-like antioxidant activity of isoselenazolones has been evaluated both in thiophenol and coupled-reductase assays. All isoselenazolones showed good GPx-like activities in the coupled-reductase assay. The ferric-reducing antioxidant power of phenolic antioxidants has also been evaluated. The best phenolic antioxidants were found to be good ferric-reducing antioxidant power agents. The single electron transfer, hydrogen atom transfer, and proton-coupled electron transfer mechanisms for the antioxidant properties of all catalysts have been supported by density functional theory calculations. The catalytic cycle was proposed for one of the phenolic isoselenazolones involving diselenide, selenenyl sulfide, selenol, and selenenic acid as intermediates using 77Se{1H} NMR spectroscopy.
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Affiliation(s)
- Manish Kumar
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
| | - Babli Chhillar
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
| | - Divya Verma
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
| | - Sumit Nain
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
| | - Vijay P Singh
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
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3
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In Silico and In Vitro Study of Antioxidant Potential of Urolithins. Antioxidants (Basel) 2023; 12:antiox12030697. [PMID: 36978945 PMCID: PMC10045577 DOI: 10.3390/antiox12030697] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 03/06/2023] [Accepted: 03/09/2023] [Indexed: 03/14/2023] Open
Abstract
In this work, quantum chemical calculations based on density functional theory (DFT) were performed to predict the antioxidant potential of four bioactive gut microbiota metabolites of the natural polyphenols ellagitannins (ETs) and ellagic acid (EA), also known as urolithins (UROs). In order to evaluate their ability to counter the effect of oxidative stress caused by reactive oxygen species (ROS), such as the hydroperoxyl radical (•OOH), different reaction mechanisms were investigated, considering water and lipid-like environments. Through our in silico results, it emerged that at physiological pH, the scavenging activity of all urolithins, except urolithin B, are higher than that of trolox and other potent antioxidants existing in nature, such as EA, α-mangostin, allicin, caffeine and melatonin. These findings were confirmed by experimental assays.
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4
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Kumar M, Sharma D, Singh VP. Modulation of the chain-breaking antioxidant activity of phenolic organochalcogens with various co-antioxidants at various pH values. Org Biomol Chem 2023; 21:1316-1327. [PMID: 36648399 DOI: 10.1039/d2ob01988d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Phenolic organochalcogen chain-breaking antioxidants, i.e. 6-bromo-8 (hexadecyltellanyl)-3,3-dimethyl-1,5-dihydro-[1,3]dioxepino[5,6-c]pyridin-9-ol and 2-methyl-2,3-dihydrobenzo[b]selenophene-5-ol, have been investigated in a two-phase (chlorobenzene/water) lipid peroxidation model system as potent inhibitors of lipid peroxyl radicals with various co-antioxidants at various pH values. The pH has a significant effect on the chain-breaking antioxidant activities of phenolic organochalcogens. The key chain-breaking mechanism profile was attributed to the first oxygen atom transfer from the lipid peroxyl radicals to the Se/Te atom, followed by hydrogen atom transfer in a solvent cage from the nearby phenolic group to the resulting alkoxyl radical. Finally, regeneration of organochalcogen antioxidants could take place in the presence of aqueous-soluble co-antioxidants. Also, in the presence of aqueous soluble N-acetylcysteine at pH 1-7, both antioxidants behaved as very good inhibitors of lipid peroxyl radicals. The role of aqueous soluble mild co-antioxidants in the regeneration studies of organochalcogen antioxidants has been investigated in a two-phase lipid peroxidation model system. The importance of the phase transfer catalyst has been explored in the inhibition studies of selenium containing antioxidants using an Fe(II) source. The overall pH-dependent antioxidant activities of organochalcogens depend on their hydrogen atom transfer ability, relative stability, and distribution in the aqueous/lipid phase.
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Affiliation(s)
- Manish Kumar
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh - 160 014, India.
| | - Deepika Sharma
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh - 160 014, India.
| | - Vijay P Singh
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh - 160 014, India.
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5
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Spiegel M, Sroka Z. Natural dihydroisobenzofuran derivatives as a template for promising radical scavengers: theoretical insights into structure–activity relationships, thermochemistry and kinetics. Theor Chem Acc 2022. [DOI: 10.1007/s00214-022-02922-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
AbstractDihydroisobenzofuran heterocycle is a structural motif found in a number of medications with anti-tumour, anti-diabetic, and antibacterial activities. It is also found in a slew of natural substances, most notably fungus metabolites, which have been shown to possess credible radical scavenging activity. Density functional theory studies on three different derivatives were conducted to investigate their electronic structures as well as thermochemical and kinetic behaviour against ·OOH, ·OH, and ·OCH3 in biologically relevant solvents, with the goal of elucidating structure–activity relationships and discussing the potential role of the scaffolds as a template for new semisynthetic antioxidants. The importance of resonance and inductive effects, and also hydrogen bonding, has been underlined, but most importantly, it has been demonstrated that all structures have considerable scavenging potential against all studied radicals, with reactions rates close to the diffusion limit.
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Spiegel M. Current Trends in Computational Quantum Chemistry Studies on Antioxidant Radical Scavenging Activity. J Chem Inf Model 2022; 62:2639-2658. [PMID: 35436117 PMCID: PMC9198981 DOI: 10.1021/acs.jcim.2c00104] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
![]()
The antioxidative
nature of chemicals is now routinely studied
using computational quantum chemistry. Scientists are constantly proposing
new approaches to investigate those methods, and the subject is evolving
at a rapid pace. The goal of this review is to collect, consolidate,
and present current trends in a clear, methodical, and reference-rich
manner. This paper is divided into several sections, each of which
corresponds to a different stage of elaborations: preliminary concerns,
electronic structure analysis, and general reactivity (thermochemistry
and kinetics). The sections are further subdivided based on methodologies
used. Concluding remarks and future perspectives are presented based
on the remaining elements.
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Affiliation(s)
- Maciej Spiegel
- Department of Pharmacognosy and Herbal Medicines, Wroclaw Medical University, Borowska 211A, 50-556 Wroclaw, Poland
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Kumar M, Singh VP. Synthesis and antioxidant activities of N-thiophenyl ebselenamines: a 77Se{ 1H} NMR mechanistic study. NEW J CHEM 2022. [DOI: 10.1039/d2nj01225a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Synthesis of N-thiophenyl ebselenamines and selenenyl sulphides as efficient radical-trapping and hydroperoxide-decomposing antioxidants, respectively has been described.
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Affiliation(s)
- Manish Kumar
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
| | - Vijay P. Singh
- Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Sector-14, Chandigarh 160 014, India
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Dalla Tiezza M, Hamlin TA, Bickelhaupt FM, Orian L. Radical Scavenging Potential of the Phenothiazine Scaffold: A Computational Analysis. ChemMedChem 2021; 16:3763-3771. [PMID: 34536069 PMCID: PMC9292796 DOI: 10.1002/cmdc.202100546] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 09/05/2021] [Indexed: 01/05/2023]
Abstract
The reactivity of phenothiazine (PS), phenoselenazine (PSE), and phenotellurazine (PTE) with different reactive oxygen species (ROS) has been studied using density functional theory (DFT) in combination with the QM-ORSA (Quantum Mechanics-based Test for Overall Free Radical Scavenging Activity) protocol for an accurate kinetic rate calculation. Four radical scavenging mechanisms have been screened, namely hydrogen atom transfer (HAT), radical adduct formation (RAF), single electron transfer (SET), and the direct oxidation of the chalcogen atom. The chosen ROS are HO. , HOO. , and CH3 OO. . PS, PSE, and PTE exhibit an excellent antioxidant activity in water regardless of the ROS due to their characteristic diffusion-controlled regime processes. For the HO. radical, the primary active reaction mechanism is, for all antioxidants, RAF. But, for HOO. and CH3 OO. , the dominant mechanism strongly depends on the antioxidant: HAT for PS and PSE, and SET for PTE. The scavenging efficiency decreases dramatically in lipid environment and remains only significant (via RAF) for the most reactive radical (HO. ). Therefore, PS, PSE, and PTE are excellent antioxidant molecules, especially in aqueous, physiological environments where they are active against a broad spectrum of harmful radicals. There is no advantage or significant difference in the scavenging efficiency when changing the chalcogen since the reactivity mainly derives from the amino hydrogen and the aromatic sites.
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Affiliation(s)
- Marco Dalla Tiezza
- Dipartimento di Scienze ChimicheUniversità degli Studi di PadovaVia Marzolo 135131PadovaItaly
| | - Trevor A. Hamlin
- Department of Theoretical ChemistryAmsterdam Institute of Molecular and Life Sciences (AIMMS)Amsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081 HVAmsterdamThe Netherlands
| | - F. Matthias Bickelhaupt
- Department of Theoretical ChemistryAmsterdam Institute of Molecular and Life Sciences (AIMMS)Amsterdam Center for Multiscale Modeling (ACMM)Vrije Universiteit AmsterdamDe Boelelaan 10831081 HVAmsterdamThe Netherlands
- Institute for Molecules and Materials (IMM)Radboud UniversityHeyendaalseweg 1356525 AJNijmegenThe Netherlands
| | - Laura Orian
- Dipartimento di Scienze ChimicheUniversità degli Studi di PadovaVia Marzolo 135131PadovaItaly
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9
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Reina M, Guzmán-López EG, Romeo I, Marino T, Russo N, Galano A. Computationally designed p-coumaric acid analogs: searching for neuroprotective antioxidants. NEW J CHEM 2021. [DOI: 10.1039/d1nj01235e] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Newly designed p-coumaric acid derivatives are promising candidates as multifunctional antioxidants with neuroprotective effects.
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Affiliation(s)
- Miguel Reina
- Departamento de Química
- Universidad Autónoma Metropolitana-Iztapalapa
- Mexico City
- Mexico
| | | | - Isabella Romeo
- Dipartimento de Chimica e Tecnologie Chimiche
- Università della Calabria
- Consenza
- Italy
| | - Tiziana Marino
- Dipartimento de Chimica e Tecnologie Chimiche
- Università della Calabria
- Consenza
- Italy
| | - Nino Russo
- Dipartimento de Chimica e Tecnologie Chimiche
- Università della Calabria
- Consenza
- Italy
| | - Annia Galano
- Departamento de Química
- Universidad Autónoma Metropolitana-Iztapalapa
- Mexico City
- Mexico
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10
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A physiological examination of the antioxidant ability of super tocopherol derivatives. Struct Chem 2020. [DOI: 10.1007/s11224-020-01585-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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11
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Milanović Ž, Tošović J, Marković S, Marković Z. Comparison of the scavenging capacities of phloroglucinol and 2,4,6-trihydroxypyridine towards HO˙ radical: a computational study. RSC Adv 2020; 10:43262-43272. [PMID: 35519718 PMCID: PMC9058218 DOI: 10.1039/d0ra08377a] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 11/21/2020] [Indexed: 01/06/2023] Open
Abstract
In this work the scavenging capacities of biologically active phloroglucinol (1,3,5-trihydroxybenzene, THB-OH) and structurally similar 2,4,6-trihydroxypyridine (THP-OH) towards HO˙ were examined. This task was realized by means of density functional theory, through investigation of all favorable antioxidative pathways in two solvents of different polarity: benzene and water. It was found that in benzene both compounds conform to the hydrogen atom transfer (HAT) and radical adduct formation (RAF) mechanisms. In water, the mechanisms of antioxidative action of the investigated compounds are far more complex, especially those of THB-OH. This compound and HO˙ undergo all four investigated mechanisms: HAT, RAF, sequential proton loss electron transfer (SPLET), and single electron transfer-proton transfer (SET-PT). HAT, RAF and SPLET are operative mechanisms in the case of THP-OH. Independently of solvent polarity, both investigated compounds are more reactive towards HO˙ in comparison to Trolox. Our final remark is as follows: the electron-withdrawing effect of the nitrogen is stronger than the electron-donating effect of the OH groups in the molecule of THP-OH. As a consequence, THB-OH is more powerful antioxidant than THP-OH, thus implying that the presence of nitrogen decreases the scavenging capacity of the respective compound.
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Affiliation(s)
- Žiko Milanović
- Department of Chemistry, Faculty of Science, University of Kragujevac 12 Radoja Domanovića 34000 Kragujevac Serbia
| | - Jelena Tošović
- Department of Chemistry, Faculty of Science, University of Kragujevac 12 Radoja Domanovića 34000 Kragujevac Serbia
| | - Svetlana Marković
- Department of Chemistry, Faculty of Science, University of Kragujevac 12 Radoja Domanovića 34000 Kragujevac Serbia
| | - Zoran Marković
- Department of Science, Institute for Information Technologies, University of Kragujevac Jovana Civijića bb 34000 Kragujevac Serbia
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12
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Kashyap C, Mazumder LJ, Rohman SS, Ullah SS, Guha AK. Re-visiting the Antioxidant Activity of Se- and Te- Carbohydrates: A Theoretical Study. ChemistrySelect 2019. [DOI: 10.1002/slct.201803814] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Chayanika Kashyap
- Department of Chemistry; Cotton University, Panbazar, Guwahati, Assam; India-781001
| | | | - Shahnaz S. Rohman
- Department of Chemistry; Cotton University, Panbazar, Guwahati, Assam; India-781001
| | - Sabnam S. Ullah
- Department of Chemistry; Cotton University, Panbazar, Guwahati, Assam; India-781001
| | - Ankur Kanti Guha
- Department of Chemistry; Cotton University, Panbazar, Guwahati, Assam; India-781001
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13
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Ji JN, Chen SL. Asymmetric abstraction of two chemically-equivalent methylene hydrogens: significant enantioselectivity of endoperoxide presented by fumitremorgin B endoperoxidase. Phys Chem Chem Phys 2018; 20:26500-26505. [DOI: 10.1039/c8cp05637d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The unique enantioselectivity for an R-chiral endoperoxy ring in verruculogen biosynthesis originates from asymmetric abstraction of two chemically-equivalent methylene hydrogens.
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Affiliation(s)
- Jian-Nan Ji
- Key Laboratory of Cluster Science of Ministry of Education
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing 100081
- China
| | - Shi-Lu Chen
- Key Laboratory of Cluster Science of Ministry of Education
- School of Chemistry and Chemical Engineering
- Beijing Institute of Technology
- Beijing 100081
- China
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