1
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Caricato M. A Perspective on the Simulation of Electronic Circular Dichroism and Circularly Polarized Luminescence Spectra in Chiral Solid Materials. J Phys Chem A 2024; 128:1197-1206. [PMID: 38295762 DOI: 10.1021/acs.jpca.3c08095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Chiral materials have shown tremendous potential for many technological applications, such as optoelectronics, sensing, magnetism, information technology, and imaging. Characterization of these materials is mostly based on chiroptical spectroscopies, such as electronic circular dichroism (ECD) and circularly polarized luminescence (CPL). These experimental measurements would greatly benefit from theoretical simulations for interpretation of the spectra as well as predictions on new materials. While ECD and CPL simulations are well established for molecular systems, they are not for materials. In this Perspective, we describe the theoretical quantities necessary to simulate ECD and CPL spectra in oriented systems. Then, we discuss the approximate strategies currently used to perform these calculations, what computational machinery is already available to develop more general approaches, and some of the open challenges for the simulation of ECD and CPL spectra in solid materials. When methods that are as reliable and computationally efficient as those for molecules are developed, these simulations will provide invaluable insight and guidance for the rational design of optically active materials.
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Affiliation(s)
- Marco Caricato
- Department of Chemistry, University of Kansas, 1567 Irving Hill Road, Lawrence, Kansas 66045, United States
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2
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Karoń K, Rode JE, Kaczorek D, Kawęcki R, Pluczyk-Małek S, Łapkowski M, Ostrowski S, Lyczko K, Dobrowolski JC. UV-vis and ECD spectroelectrochemistry of atropisomeric naphthalenediimide derivative. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 288:122089. [PMID: 36436264 DOI: 10.1016/j.saa.2022.122089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 10/21/2022] [Accepted: 11/05/2022] [Indexed: 06/16/2023]
Abstract
The UV-vis and ECD spectroelectrochemistry (SEC) of a chiral binaphthalenylamine derivative of the N-butyl naphthalenediimide (NDIB-NH2) enantiomers were applied to measure UV-vis and ECD spectra of NDIB-NH2 radicals and dianion formed in the reduction and oxidation processes observed in cyclic voltammetry (CV). The CV curves and EPR spectroelectrochemistry enabled us to establish conditions at which a radical-anion [NDIB-NH2]̇.-, a dianion [NDIB-NH2]2-, and a radical-cation [NDIB-NH2]̇.+ are formed. The DFT restricted open-shell CAM-B3LYP-D3/def2TZVP/PCM calculations demonstrated that in the radical-anion [NDIB-NH2]̇.-, spin is spread over the NDI system while in the radical-cation [NDIB-NH2]̇+ it is spread over the aminonaphthalene moiety. The UV-vis spectra of radical-anion and dianion show the most significant changes in the 400-800 nm range. In that range, the ECD spectra varied with the change of electrode potential more than the UV-vis did and enabled the identification of a new ECD band of [NDIB-NH2]̇.- at ca. 400 nm hidden in the background in the UV spectra at -1000 mV. A broad structured ECD pattern with a maximum at ca. 530 nm was observed for [NDIB-NH2]̇.- (-1000 mV), while a single smooth ECD band of [NDIB-NH2]2- was located at 520 nm (-1750 mV). For the first time, an isosbestic point (455 nm) was found in ECD spectroelectrochemical measurements for the radical-cation [NDIB-NH2]̇.+ in equilibrium with the NDIB-NH2 neutral form. The TD-DFT CAM-B3LYP-D3/6-31G** calculations combined with the hybrid (explicit combined with implicit) solvation model fairly well reproduced the UV-vis and ECD SEC of neutral and redox forms of NDIB-NH2 but the ECD spectrum of [NDIB-NH2]̇.+ above 390 nm.
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Affiliation(s)
- Krzysztof Karoń
- Faculty of Chemistry, Silesian University of Technology, 9 Strzody Street, 44-100 Gliwice, Poland; Centre for Organic and Nanohybrid Electronics, Silesian University of Technology, 22b Konarskiego Street, 44-100 Gliwice, Poland.
| | - Joanna E Rode
- Laboratory for Spectroscopy, Molecular Modeling and Structure Determination, Institute of Nuclear Chemistry and Technology, 16 Dorodna Street, 03-195 Warsaw, Poland.
| | - Dorota Kaczorek
- Faculty of Science, Siedlce University, 3 Maja Street No 54, 08-110 Siedlce, Poland
| | - Robert Kawęcki
- Faculty of Science, Siedlce University, 3 Maja Street No 54, 08-110 Siedlce, Poland
| | - Sandra Pluczyk-Małek
- Faculty of Chemistry, Silesian University of Technology, 9 Strzody Street, 44-100 Gliwice, Poland; Centre for Organic and Nanohybrid Electronics, Silesian University of Technology, 22b Konarskiego Street, 44-100 Gliwice, Poland
| | - Mieczysław Łapkowski
- Faculty of Chemistry, Silesian University of Technology, 9 Strzody Street, 44-100 Gliwice, Poland; Centre for Organic and Nanohybrid Electronics, Silesian University of Technology, 22b Konarskiego Street, 44-100 Gliwice, Poland; Centre of Polymer and Carbon Materials, Polish Academy of Science, 34 Curie Sklodowska Street, 41-800 Zabrze, Poland
| | - Sławomir Ostrowski
- Laboratory for Spectroscopy, Molecular Modeling and Structure Determination, Institute of Nuclear Chemistry and Technology, 16 Dorodna Street, 03-195 Warsaw, Poland
| | - Krzysztof Lyczko
- Laboratory for Spectroscopy, Molecular Modeling and Structure Determination, Institute of Nuclear Chemistry and Technology, 16 Dorodna Street, 03-195 Warsaw, Poland
| | - Jan Cz Dobrowolski
- Laboratory for Spectroscopy, Molecular Modeling and Structure Determination, Institute of Nuclear Chemistry and Technology, 16 Dorodna Street, 03-195 Warsaw, Poland.
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3
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Hudecová J, Kapitán J, Dračínský M, Michal P, Profant V, Bouř P. Structure of Zinc and Nickel Histidine Complexes in Solution Revealed by Molecular Dynamics and Raman Optical Activity. Chemistry 2022; 28:e202202045. [DOI: 10.1002/chem.202202045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Indexed: 11/08/2022]
Affiliation(s)
- Jana Hudecová
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16000 Prague Czech Republic
- Department of Optics Palacký University 17. listopadu 12 771 46 Olomouc Czech Republic
| | - Josef Kapitán
- Department of Optics Palacký University 17. listopadu 12 771 46 Olomouc Czech Republic
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16000 Prague Czech Republic
| | - Pavel Michal
- Department of Optics Palacký University 17. listopadu 12 771 46 Olomouc Czech Republic
| | - Václav Profant
- Faculty of Mathematics and Physics Charles University Ke Karlovu 5 121 16 Prague Czech Republic
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16000 Prague Czech Republic
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4
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Morgante P, Ludowieg HD, Autschbach J. Comparative Study of Vibrational Raman Optical Activity with Different Time-Dependent Density Functional Approximations: The VROA36 Database. J Phys Chem A 2022; 126:2909-2927. [PMID: 35512708 DOI: 10.1021/acs.jpca.2c00951] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
A new database, VROA36, is introduced to investigate the performance of computational approaches for vibrational Raman optical activity (VROA) calculations. The database is composed of 36 molecules with known experimental VROA spectra. It includes 93 conformers. Normal modes calculated with B3LYP-D3(BJ)/def2-TZVP are used to compute the VROA spectra with four functionals, B3LYP-D3(BJ), ωB97X-D, M11, and optimally tuned LC-PBE, as well as several basis sets. SimROA indices and frequency scaling factors are used to compare calculated spectra with each other and with experimental data. The four functionals perform equally well independently of the basis set and usually achieve good agreement with the experimental data. For molecules in near- or at-resonance conditions, the inclusion of a complex (damped) linear response approach is important to obtain physically meaningful VROA intensities. The use of any of the tested functional approximations with the def2-SVPD Gaussian-type basis set, or a basis of similar flexibility, can be recommended for efficient and reliable theoretical VROA studies.
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Affiliation(s)
- Pierpaolo Morgante
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
| | - Herbert D Ludowieg
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
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5
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Zając G, Bouř P. Measurement and Theory of Resonance Raman Optical Activity for Gases, Liquids, and Aggregates. What It Tells about Molecules. J Phys Chem B 2021; 126:355-367. [PMID: 34792364 DOI: 10.1021/acs.jpcb.1c08370] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Resonance Raman Optical Activity (RROA) appeared as a natural extension of the nonresonance branch. It combines the structural sensitivity of chiroptical spectroscopy with the signal enhancement coming from the resonance of molecular electronic transitions with the excitation laser light. However, the idea has been hampered by many technical and theoretical problems that are being clarified only in recent years. We provide the theoretical basis and several examples documenting the problems, achievements, and potential of RROA, in particular in biomolecular studies.
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Affiliation(s)
- Grzegorz Zając
- Jagiellonian Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague, 16610, Czech Republic
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6
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Mattiat J, Luber S. Recent Progress in the Simulation of Chiral Systems with Real Time Propagation Methods. Helv Chim Acta 2021. [DOI: 10.1002/hlca.202100154] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Johann Mattiat
- Department of Chemistry University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
| | - Sandra Luber
- Department of Chemistry University of Zurich Winterthurerstrasse 190 CH-8057 Zurich Switzerland
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7
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Machalska E, Zajac G, Wierzba AJ, Kapitán J, Andruniów T, Spiegel M, Gryko D, Bouř P, Baranska M. Recognition of the True and False Resonance Raman Optical Activity. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202107600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Ewa Machalska
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30-387 Krakow Poland
- Jagiellonian Centre for Experimental Therapeutics (JCET) Jagiellonian University Bobrzynskiego 14 30-348 Krakow Poland
| | - Grzegorz Zajac
- Jagiellonian Centre for Experimental Therapeutics (JCET) Jagiellonian University Bobrzynskiego 14 30-348 Krakow Poland
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Aleksandra J. Wierzba
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Josef Kapitán
- Department of Optics Palacký University Olomouc 17. listopadu 12 77146 Olomouc Czech Republic
| | - Tadeusz Andruniów
- Department of Chemistry Wroclaw University of Science and Technology Wyb. Wyspianskiego 27 50-370 Wroclaw Poland
| | - Maciej Spiegel
- Department of Pharmacognosy and Herbal Medicine Wroclaw Medical University Borowska 211A 50-556 Wroclaw Poland
| | - Dorota Gryko
- Institute of Organic Chemistry Polish Academy of Sciences Kasprzaka 44/52 01-224 Warsaw Poland
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Malgorzata Baranska
- Faculty of Chemistry Jagiellonian University Gronostajowa 2 30-387 Krakow Poland
- Jagiellonian Centre for Experimental Therapeutics (JCET) Jagiellonian University Bobrzynskiego 14 30-348 Krakow Poland
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8
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Machalska E, Zajac G, Wierzba AJ, Kapitán J, Andruniów T, Spiegel M, Gryko D, Bouř P, Baranska M. Recognition of the True and False Resonance Raman Optical Activity. Angew Chem Int Ed Engl 2021; 60:21205-21210. [PMID: 34216087 PMCID: PMC8519086 DOI: 10.1002/anie.202107600] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 07/01/2021] [Indexed: 12/16/2022]
Abstract
Resonance Raman optical activity (RROA) possesses all aspects of a sensitive tool for molecular detection, but its measurement remains challenging. We demonstrate that reliable recording of RROA of chiral colorful compounds is possible, but only after considering the effect of the electronic circular dichroism (ECD) on the ROA spectra induced by the dissolved chiral compound. We show RROA for a number of model vitamin B12 derivatives that are chemically similar but exhibit distinctively different spectroscopic behavior. The ECD/ROA effect is proportional to the concentration and dependent on the optical pathlength of the light propagating through the sample. It can severely alter relative band intensities and signs in the natural RROA spectra. The spectra analyses are supported by computational modeling based on density functional theory. Neglecting the ECD effect during ROA measurement can lead to misinterpretation of the recorded spectra and erroneous conclusions about the molecular structure.
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Affiliation(s)
- Ewa Machalska
- Faculty of ChemistryJagiellonian UniversityGronostajowa 230-387KrakowPoland
- Jagiellonian Centre for Experimental Therapeutics (JCET)Jagiellonian UniversityBobrzynskiego 1430-348KrakowPoland
| | - Grzegorz Zajac
- Jagiellonian Centre for Experimental Therapeutics (JCET)Jagiellonian UniversityBobrzynskiego 1430-348KrakowPoland
- Institute of Organic Chemistry and BiochemistryAcademy of SciencesFlemingovo náměstí 216610PragueCzech Republic
| | - Aleksandra J. Wierzba
- Institute of Organic ChemistryPolish Academy of SciencesKasprzaka 44/5201-224WarsawPoland
| | - Josef Kapitán
- Department of OpticsPalacký University Olomouc17. listopadu 1277146OlomoucCzech Republic
| | - Tadeusz Andruniów
- Department of ChemistryWroclaw University of Science and TechnologyWyb. Wyspianskiego 2750-370WroclawPoland
| | - Maciej Spiegel
- Department of Pharmacognosy and Herbal MedicineWroclaw Medical UniversityBorowska 211A50-556WroclawPoland
| | - Dorota Gryko
- Institute of Organic ChemistryPolish Academy of SciencesKasprzaka 44/5201-224WarsawPoland
| | - Petr Bouř
- Institute of Organic Chemistry and BiochemistryAcademy of SciencesFlemingovo náměstí 216610PragueCzech Republic
| | - Malgorzata Baranska
- Faculty of ChemistryJagiellonian UniversityGronostajowa 230-387KrakowPoland
- Jagiellonian Centre for Experimental Therapeutics (JCET)Jagiellonian UniversityBobrzynskiego 1430-348KrakowPoland
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9
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Kos M, Rodríguez R, Storch J, Sýkora J, Caytan E, Cordier M, Císařová I, Vanthuyne N, Williams JAG, Žádný J, Církva V, Crassous J. Enantioenriched Ruthenium-Tris-Bipyridine Complexes Bearing One Helical Bipyridine Ligand: Access to Fused Multihelicenic Systems and Chiroptical Redox Switches. Inorg Chem 2021; 60:11838-11851. [PMID: 34297562 DOI: 10.1021/acs.inorgchem.1c01379] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The synthesis and photophysical and chiroptical properties of novel aza[n]helicenes (6a-d, 10a,b, n = 4-7) substituted with one or two 2-pyridyl groups are described. The preparation was performed via an adapted Mallory reaction using aromatic imines as precursors. The obtained novel class of helical 2,2'-bipyridine ligands was then coordinated to Ru(bipy)22+ units, thus affording the first diastereomerically and enantiomerically pure [RuL(bipy)2]2+ (11a,c, L = 6a,c) or [Ru2L'(bipy)4]4+ (12, L' = 10b) complexes. The topology and stereochemistry of these novel metal-based helical architectures were studied in detail, notably using X-ray crystallography. Interestingly, the coordination to ruthenium(II) enabled the preparation of fused multihelical systems incorporating aza- and ruthena-helicenes within the same scaffold. The photophysical, chiroptical, and redox properties of these complexes were examined in detail, and efficient redox-triggered chiroptical switching activity was evidenced.
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Affiliation(s)
- Martin Kos
- Institute of Chemical Process Fundamentals of the Czech Academy of Sciences, v. v. i., Rozvojová 135, 165 02 Prague 6, Czech Republic
| | - Rafael Rodríguez
- Univ Rennes CNRS, , ISCR-UMR 6226 ScanMat-UMS 2001, 35000 Rennes, France
| | - Jan Storch
- Institute of Chemical Process Fundamentals of the Czech Academy of Sciences, v. v. i., Rozvojová 135, 165 02 Prague 6, Czech Republic
| | - Jan Sýkora
- Institute of Chemical Process Fundamentals of the Czech Academy of Sciences, v. v. i., Rozvojová 135, 165 02 Prague 6, Czech Republic
| | - Elsa Caytan
- Univ Rennes CNRS, , ISCR-UMR 6226 ScanMat-UMS 2001, 35000 Rennes, France
| | - Marie Cordier
- Univ Rennes CNRS, , ISCR-UMR 6226 ScanMat-UMS 2001, 35000 Rennes, France
| | - Ivana Císařová
- Department of Inorganic Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030, 128 40 Prague 2, Czech Republic
| | - Nicolas Vanthuyne
- Aix Marseille Université, Centrale Marseille, CNRS, iSm2, UMR 7313 Marseille, France
| | | | - Jaroslav Žádný
- Institute of Chemical Process Fundamentals of the Czech Academy of Sciences, v. v. i., Rozvojová 135, 165 02 Prague 6, Czech Republic
| | - Vladimír Církva
- Institute of Chemical Process Fundamentals of the Czech Academy of Sciences, v. v. i., Rozvojová 135, 165 02 Prague 6, Czech Republic
| | - Jeanne Crassous
- Univ Rennes CNRS, , ISCR-UMR 6226 ScanMat-UMS 2001, 35000 Rennes, France
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Pallova L, Gauthier ES, Abella L, Jean M, Vanthuyne N, Dorcet V, Vendier L, Autschbach J, Crassous J, Bastin S, César V. Synthesis and Properties of Partially Saturated Fluorenyl-Derived [n]Helicenes Featuring an Overcrowded Alkene. Chemistry 2021; 27:7722-7730. [PMID: 33780559 DOI: 10.1002/chem.202100150] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Indexed: 01/25/2023]
Abstract
The straightforward, multigram-scale synthesis of the partially saturated H6 -fluoreno[n]helicenes (n=5 or 7) featuring a central, overcrowded alkene is described. The key cyclization step was based on an intramolecular McMurry reaction from the corresponding 1,5-diketones. Chiral stationary phase HPLC analysis and isomer separation indicate that each helicenic compound is constituted of three diastereoisomers at room temperature, i. e. the configurationally stable (R,R,P)/(S,S,M) pair of enantiomers and an apparently achiral compound resulting from the rapid interconversion between the (R,S,P) and (S,R,M) enantiomers. The partially saturated H6 -fluoreno[n]helicenes are oxidatively aromatized to give an efficient access to the corresponding fluoreno[n]helicenes. The chiroptical properties (vibrational and electronic circular dichroism) of the chiral, enantiopure compounds have been measured and analyzed by quantum-chemical calculations, confirming their helicoidal nature.
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Affiliation(s)
- Lenka Pallova
- LCC-CNRS, Université de Toulouse, CNRS, 31077, Toulouse, France
| | - Etienne S Gauthier
- Institut des Sciences Chimiques de Rennes, UMR 6226, Institut de Physique de Rennes, UMR 6251, Campus de Beaulieu, CNRS-Université de Rennes 1, 35042, Rennes Cedex, France
| | - Laura Abella
- Department of chemistry, University at Buffalo - State University of New York, Buffalo, NY 14260, USA
| | - Marion Jean
- Aix Marseille university, CNRS, Centrale Marseille, Ism2, 13397, Marseille, France
| | - Nicolas Vanthuyne
- Aix Marseille university, CNRS, Centrale Marseille, Ism2, 13397, Marseille, France
| | - Vincent Dorcet
- Institut des Sciences Chimiques de Rennes, UMR 6226, Institut de Physique de Rennes, UMR 6251, Campus de Beaulieu, CNRS-Université de Rennes 1, 35042, Rennes Cedex, France
| | - Laure Vendier
- LCC-CNRS, Université de Toulouse, CNRS, 31077, Toulouse, France
| | - Jochen Autschbach
- Department of chemistry, University at Buffalo - State University of New York, Buffalo, NY 14260, USA
| | - Jeanne Crassous
- Institut des Sciences Chimiques de Rennes, UMR 6226, Institut de Physique de Rennes, UMR 6251, Campus de Beaulieu, CNRS-Université de Rennes 1, 35042, Rennes Cedex, France
| | | | - Vincent César
- LCC-CNRS, Université de Toulouse, CNRS, 31077, Toulouse, France
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11
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Moreno K, Merlet E, McClenaghan N, Buffeteau T, Ferrand Y, Olivier C. Influence of Positional Isomerism on the Chiroptical Properties of Functional Aromatic Oligoamide Foldamers. Chempluschem 2021; 86:496-503. [PMID: 33755326 DOI: 10.1002/cplu.202100051] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 03/08/2021] [Indexed: 12/25/2022]
Abstract
A series of functionalized quinoline-based aromatic oligoamide foldamers were prepared in their two enantiomeric forms, comprising an enantiopure terminal camphanyl chiral inducer, which governed the adjacent (P-/M-) helical-handedness. Hierarchical chirality transfer was further investigated in chromophore-appended variants via a range of electronic and vibrational spectroscopic techniques, including circularly polarized luminescence, vibrational circular dichroism and fluorescence. Intense total and polarized photoluminescence (up to Φlum =0.39, glum =1.5×10-3 ) was observed in the visible region from these modular multicomponent architectures and a significant influence of positional isomerism was evidenced. The optimal position of a fluorophore substituent on the quinoline hexamers was determined as being position 2 over position 6, as stronger chiroptical features were systematically observed with the 2-positioned derivatives.
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Affiliation(s)
- Kevin Moreno
- Institut des Sciences Moléculaires, UMR 5255 CNRS, Université de Bordeaux, 351 Cours de la Libération, 33405, Talence Cedex, France
| | - Eric Merlet
- Institut de Chimie et Biologie des Membranes et des Nano-objets, UMR 5248 CNRS, Université de Bordeaux, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Nathan McClenaghan
- Institut des Sciences Moléculaires, UMR 5255 CNRS, Université de Bordeaux, 351 Cours de la Libération, 33405, Talence Cedex, France
| | - Thierry Buffeteau
- Institut des Sciences Moléculaires, UMR 5255 CNRS, Université de Bordeaux, 351 Cours de la Libération, 33405, Talence Cedex, France
| | - Yann Ferrand
- Institut de Chimie et Biologie des Membranes et des Nano-objets, UMR 5248 CNRS, Université de Bordeaux, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Céline Olivier
- Institut des Sciences Moléculaires, UMR 5255 CNRS, Université de Bordeaux, 351 Cours de la Libération, 33405, Talence Cedex, France
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12
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Demissie TB, Sundar MS, Thangavel K, Andrushchenko V, Bedekar AV, Bouř P. Origins of Optical Activity in an Oxo-Helicene: Experimental and Computational Studies. ACS OMEGA 2021; 6:2420-2428. [PMID: 33521480 PMCID: PMC7841950 DOI: 10.1021/acsomega.0c06079] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 12/24/2020] [Indexed: 05/08/2023]
Abstract
Helicenes are known to provide extremely strong optical activity. Prediction of the properties of helicenes may facilitate their design and synthesis for analytical or materials sciences. On a model 7,12,17-trioxa[11]helicene molecule, experimental results from multiple spectroscopic techniques are analyzed on the basis of density functional theory (DFT) simulations to test computational methodology and analyze the origins of chirality. Infrared (IR), vibrational circular dichroism (VCD), electronic circular dichroism (ECD), magnetic circular dichroism (MCD), and Raman optical activity (ROA, computations only) spectra are compared. Large dissymmetry factors are predicted both for vibrational (ROA/Raman ∼ VCD/IR ∼ 10-3) and electronic (ECD/Abs ∼10-2) optical activity, which could be verified experimentally except for ROA. Largest VCD signals come from a strong vibrational coupling of the C-H in-plane and out-of-plane bending modes in stacked helicene rings. The sum-over-states (SOS) approach appeared convenient for simulation of MCD spectra. Our results demonstrated that selected computational methods can be successfully used for reliable modeling of spectral and chiroptical properties of large helicenes. In particular, they can be used for guiding rational design of strongly chiral chromophores.
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Affiliation(s)
- Taye B. Demissie
- Institute
of Organic Chemistry and Biochemistry, Academy
of Sciences, Flemingovo
náměstí 2, 16610 Prague, Czech Republic
- Materials
Science Program, Department of Chemistry, Addis Ababa University, P. O. Box 1176, Addis Ababa 1176, Ethiopia
- Department
of Chemistry, University of Botswana, Notwane Rd, P/bag
UB 00704 Gaborone, Botswana
| | - M. Shyam Sundar
- Institute
of Organic Chemistry and Biochemistry, Academy
of Sciences, Flemingovo
náměstí 2, 16610 Prague, Czech Republic
| | - Karthick Thangavel
- Institute
of Organic Chemistry and Biochemistry, Academy
of Sciences, Flemingovo
náměstí 2, 16610 Prague, Czech Republic
- Department
of Physics, School of Electrical and Electronics Engineering, SASTRA Deemed University, Thanjavur, 613 401 Tamil Nadu, India
| | - Valery Andrushchenko
- Institute
of Organic Chemistry and Biochemistry, Academy
of Sciences, Flemingovo
náměstí 2, 16610 Prague, Czech Republic
| | - Ashutosh V. Bedekar
- Department
of Chemistry, Faculty of Science, The Maharaja
Sayajirao University of Baroda, Vadodara 390 002, India
| | - Petr Bouř
- Institute
of Organic Chemistry and Biochemistry, Academy
of Sciences, Flemingovo
náměstí 2, 16610 Prague, Czech Republic
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Affiliation(s)
- Tadashi Mori
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University,2-1 Yamada-oka, Suita, Osaka 565-0871, Japan
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14
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Vacek J, Zadny J, Storch J, Hrbac J. Chiral Electrochemistry: Anodic Deposition of Enantiopure Helical Molecules. Chempluschem 2020; 85:1954-1958. [DOI: 10.1002/cplu.202000389] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2020] [Revised: 06/22/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Jan Vacek
- Department of Medical Chemistry and Biochemistry Faculty of Medicine and Dentistry Palacky University Hnevotinska 3 77515 Olomouc Czech Republic
| | - Jaroslav Zadny
- Institute of Chemical Process Fundamentals Czech Academy of Sciences Rozvojova 135 16502 Prague 6 Czech Republic
| | - Jan Storch
- Institute of Chemical Process Fundamentals Czech Academy of Sciences Rozvojova 135 16502 Prague 6 Czech Republic
| | - Jan Hrbac
- Institute of Chemistry Masaryk University Kamenice 5 72500 Brno Czech Republic
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15
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Aprà E, Bylaska EJ, de Jong WA, Govind N, Kowalski K, Straatsma TP, Valiev M, van Dam HJJ, Alexeev Y, Anchell J, Anisimov V, Aquino FW, Atta-Fynn R, Autschbach J, Bauman NP, Becca JC, Bernholdt DE, Bhaskaran-Nair K, Bogatko S, Borowski P, Boschen J, Brabec J, Bruner A, Cauët E, Chen Y, Chuev GN, Cramer CJ, Daily J, Deegan MJO, Dunning TH, Dupuis M, Dyall KG, Fann GI, Fischer SA, Fonari A, Früchtl H, Gagliardi L, Garza J, Gawande N, Ghosh S, Glaesemann K, Götz AW, Hammond J, Helms V, Hermes ED, Hirao K, Hirata S, Jacquelin M, Jensen L, Johnson BG, Jónsson H, Kendall RA, Klemm M, Kobayashi R, Konkov V, Krishnamoorthy S, Krishnan M, Lin Z, Lins RD, Littlefield RJ, Logsdail AJ, Lopata K, Ma W, Marenich AV, Martin Del Campo J, Mejia-Rodriguez D, Moore JE, Mullin JM, Nakajima T, Nascimento DR, Nichols JA, Nichols PJ, Nieplocha J, Otero-de-la-Roza A, Palmer B, Panyala A, Pirojsirikul T, Peng B, Peverati R, Pittner J, Pollack L, Richard RM, Sadayappan P, Schatz GC, Shelton WA, Silverstein DW, Smith DMA, Soares TA, Song D, Swart M, Taylor HL, Thomas GS, Tipparaju V, Truhlar DG, Tsemekhman K, Van Voorhis T, Vázquez-Mayagoitia Á, Verma P, Villa O, Vishnu A, Vogiatzis KD, Wang D, Weare JH, Williamson MJ, Windus TL, Woliński K, Wong AT, Wu Q, Yang C, Yu Q, Zacharias M, Zhang Z, Zhao Y, Harrison RJ. NWChem: Past, present, and future. J Chem Phys 2020; 152:184102. [PMID: 32414274 DOI: 10.1063/5.0004997] [Citation(s) in RCA: 293] [Impact Index Per Article: 73.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Specialized computational chemistry packages have permanently reshaped the landscape of chemical and materials science by providing tools to support and guide experimental efforts and for the prediction of atomistic and electronic properties. In this regard, electronic structure packages have played a special role by using first-principle-driven methodologies to model complex chemical and materials processes. Over the past few decades, the rapid development of computing technologies and the tremendous increase in computational power have offered a unique chance to study complex transformations using sophisticated and predictive many-body techniques that describe correlated behavior of electrons in molecular and condensed phase systems at different levels of theory. In enabling these simulations, novel parallel algorithms have been able to take advantage of computational resources to address the polynomial scaling of electronic structure methods. In this paper, we briefly review the NWChem computational chemistry suite, including its history, design principles, parallel tools, current capabilities, outreach, and outlook.
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Affiliation(s)
- E Aprà
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - E J Bylaska
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - W A de Jong
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - N Govind
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - K Kowalski
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - T P Straatsma
- National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - M Valiev
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - H J J van Dam
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - Y Alexeev
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - J Anchell
- Intel Corporation, Santa Clara, California 95054, USA
| | - V Anisimov
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - F W Aquino
- QSimulate, Cambridge, Massachusetts 02139, USA
| | - R Atta-Fynn
- Department of Physics, The University of Texas at Arlington, Arlington, Texas 76019, USA
| | - J Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, USA
| | - N P Bauman
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - J C Becca
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - D E Bernholdt
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | | | - S Bogatko
- 4G Clinical, Wellesley, Massachusetts 02481, USA
| | - P Borowski
- Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, 20-031 Lublin, Poland
| | - J Boschen
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - J Brabec
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, 18223 Prague 8, Czech Republic
| | - A Bruner
- Department of Chemistry and Physics, University of Tennessee at Martin, Martin, Tennessee 38238, USA
| | - E Cauët
- Service de Chimie Quantique et Photophysique (CP 160/09), Université libre de Bruxelles, B-1050 Brussels, Belgium
| | - Y Chen
- Facebook, Menlo Park, California 94025, USA
| | - G N Chuev
- Institute of Theoretical and Experimental Biophysics, Russian Academy of Science, Pushchino, Moscow Region 142290, Russia
| | - C J Cramer
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - J Daily
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - M J O Deegan
- SKAO, Jodrell Bank Observatory, Macclesfield SK11 9DL, United Kingdom
| | - T H Dunning
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - M Dupuis
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, USA
| | - K G Dyall
- Dirac Solutions, Portland, Oregon 97229, USA
| | - G I Fann
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - S A Fischer
- Chemistry Division, U. S. Naval Research Laboratory, Washington, DC 20375, USA
| | - A Fonari
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - H Früchtl
- EaStCHEM and School of Chemistry, University of St. Andrews, St. Andrews KY16 9ST, United Kingdom
| | - L Gagliardi
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - J Garza
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, Col. Vicentina, Iztapalapa, C.P. 09340 Ciudad de México, Mexico
| | - N Gawande
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - S Ghosh
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 5545, USA
| | - K Glaesemann
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - A W Götz
- San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093, USA
| | - J Hammond
- Intel Corporation, Santa Clara, California 95054, USA
| | - V Helms
- Center for Bioinformatics, Saarland University, D-66041 Saarbrücken, Germany
| | - E D Hermes
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, USA
| | - K Hirao
- Next-generation Molecular Theory Unit, Advanced Science Institute, RIKEN, Saitama 351-0198, Japan
| | - S Hirata
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - M Jacquelin
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - L Jensen
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - B G Johnson
- Acrobatiq, Pittsburgh, Pennsylvania 15206, USA
| | - H Jónsson
- Faculty of Physical Sciences, University of Iceland, Reykjavík, Iceland and Department of Applied Physics, Aalto University, FI-00076 Aalto, Espoo, Finland
| | - R A Kendall
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - M Klemm
- Intel Corporation, Santa Clara, California 95054, USA
| | - R Kobayashi
- ANU Supercomputer Facility, Australian National University, Canberra, Australia
| | - V Konkov
- Chemistry Program, Florida Institute of Technology, Melbourne, Florida 32901, USA
| | - S Krishnamoorthy
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - M Krishnan
- Facebook, Menlo Park, California 94025, USA
| | - Z Lin
- Department of Physics, University of Science and Technology of China, Hefei, China
| | - R D Lins
- Aggeu Magalhaes Institute, Oswaldo Cruz Foundation, Recife, Brazil
| | | | - A J Logsdail
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, Wales CF10 3AT, United Kingdom
| | - K Lopata
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - W Ma
- Institute of Software, Chinese Academy of Sciences, Beijing, China
| | - A V Marenich
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - J Martin Del Campo
- Departamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, México City, Mexico
| | - D Mejia-Rodriguez
- Quantum Theory Project, Department of Physics, University of Florida, Gainesville, Florida 32611, USA
| | - J E Moore
- Intel Corporation, Santa Clara, California 95054, USA
| | - J M Mullin
- DCI-Solutions, Aberdeen Proving Ground, Maryland 21005, USA
| | - T Nakajima
- Computational Molecular Science Research Team, RIKEN Center for Computational Science, Kobe, Hyogo 650-0047, Japan
| | - D R Nascimento
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - J A Nichols
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - P J Nichols
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - J Nieplocha
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - A Otero-de-la-Roza
- Departamento de Química Física y Analítica, Facultad de Química, Universidad de Oviedo, 33006 Oviedo, Spain
| | - B Palmer
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - A Panyala
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - T Pirojsirikul
- Department of Chemistry, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - B Peng
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - R Peverati
- Chemistry Program, Florida Institute of Technology, Melbourne, Florida 32901, USA
| | - J Pittner
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 18223 Prague 8, Czech Republic
| | - L Pollack
- StudyPoint, Boston, Massachusetts 02114, USA
| | | | - P Sadayappan
- School of Computing, University of Utah, Salt Lake City, Utah 84112, USA
| | - G C Schatz
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - W A Shelton
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | | | - D M A Smith
- Intel Corporation, Santa Clara, California 95054, USA
| | - T A Soares
- Dept. of Fundamental Chemistry, Universidade Federal de Pernambuco, Recife, Brazil
| | - D Song
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - M Swart
- ICREA, 08010 Barcelona, Spain and Universitat Girona, Institut de Química Computacional i Catàlisi, Campus Montilivi, 17003 Girona, Spain
| | - H L Taylor
- CD-adapco/Siemens, Melville, New York 11747, USA
| | - G S Thomas
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - V Tipparaju
- Cray Inc., Bloomington, Minnesota 55425, USA
| | - D G Truhlar
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | | | - T Van Voorhis
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Á Vázquez-Mayagoitia
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - P Verma
- 1QBit, Vancouver, British Columbia V6E 4B1, Canada
| | - O Villa
- NVIDIA, Santa Clara, California 95051, USA
| | - A Vishnu
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - K D Vogiatzis
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, USA
| | - D Wang
- College of Physics and Electronics, Shandong Normal University, Jinan, Shandong 250014, China
| | - J H Weare
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA
| | - M J Williamson
- Department of Chemistry, Cambridge University, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - T L Windus
- Department of Chemistry, Iowa State University and Ames Laboratory, Ames, Iowa 50011, USA
| | - K Woliński
- Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, 20-031 Lublin, Poland
| | - A T Wong
- Qwil, San Francisco, California 94107, USA
| | - Q Wu
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - C Yang
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Q Yu
- AMD, Santa Clara, California 95054, USA
| | - M Zacharias
- Department of Physics, Technical University of Munich, 85748 Garching, Germany
| | - Z Zhang
- Stanford Research Computing Center, Stanford University, Stanford, California 94305, USA
| | - Y Zhao
- State Key Laboratory of Silicate Materials for Architectures, International School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, China
| | - R J Harrison
- Institute for Advanced Computational Science, Stony Brook University, Stony Brook, New York 11794, USA
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16
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Abella L, Ludowieg HD, Autschbach J. Theoretical study of the Raman optical activity spectra of with M = Co, Rh. Chirality 2020; 32:741-752. [DOI: 10.1002/chir.23194] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Revised: 02/07/2020] [Accepted: 02/08/2020] [Indexed: 11/06/2022]
Affiliation(s)
- Laura Abella
- Department of Chemistry University at Buffalo, State University of New York Buffalo New York
| | - Herbert D. Ludowieg
- Department of Chemistry University at Buffalo, State University of New York Buffalo New York
| | - Jochen Autschbach
- Department of Chemistry University at Buffalo, State University of New York Buffalo New York
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17
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Abstract
Recent progress in chiroptical switches including on/off, amplification, and inversion of the chiral signals such as ECD and CPL in supramolecular assemblies is shown.
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Affiliation(s)
- Li Zhang
- Beijing National Laboratory for Molecular Science (BNLMS)
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Han-Xiao Wang
- Beijing National Laboratory for Molecular Science (BNLMS)
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Shuai Li
- Beijing National Laboratory for Molecular Science (BNLMS)
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Minghua Liu
- Beijing National Laboratory for Molecular Science (BNLMS)
- CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
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18
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Herndon JW. The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the year 2018. Coord Chem Rev 2019. [DOI: 10.1016/j.ccr.2019.213051] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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19
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Isla H, Saleh N, Ou-Yang JK, Dhbaibi K, Jean M, Dziurka M, Favereau L, Vanthuyne N, Toupet L, Jamoussi B, Srebro-Hooper M, Crassous J. Bis-4-aza[6]helicene: A Bis-helicenic 2,2′-Bipyridine with Chemically Triggered Chiroptical Switching Activity. J Org Chem 2019; 84:5383-5393. [DOI: 10.1021/acs.joc.9b00389] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Helena Isla
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
| | - Nidal Saleh
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
| | - Jiang-Kun Ou-Yang
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
| | - Kais Dhbaibi
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
- Faculty of Science of Gabès, University of Gabès, Zrig, 6072 Gabès, Tunisia
| | - Marion Jean
- Aix Marseille Université, CNRS, Centrale Marseille, iSm2, 13397 Marseille, France
| | - Magdalena Dziurka
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Ludovic Favereau
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
| | - Nicolas Vanthuyne
- Aix Marseille Université, CNRS, Centrale Marseille, iSm2, 13397 Marseille, France
| | - Loïc Toupet
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
| | - Bassem Jamoussi
- Faculty of Science of Gabès, University of Gabès, Zrig, 6072 Gabès, Tunisia
- Université Virtuelle de Tunis, UR17ES01 Didactique des Sciences Expérimentales et de Chimie Supramoléculaire, Tunis, Tunisia
| | - Monika Srebro-Hooper
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Jeanne Crassous
- Université Rennes, Institut des Sciences Chimiques de Rennes, UMR CNRS, 6226 Campus de Beaulieu, 35042 Rennes Cedex, France
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20
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Michal P, Čelechovský R, Dudka M, Kapitán J, Vůjtek M, Berešová M, Šebestík J, Thangavel K, Bouř P. Vibrational Optical Activity of Intermolecular, Overtone, and Combination Bands: 2-Chloropropionitrile and α-Pinene. J Phys Chem B 2019; 123:2147-2156. [DOI: 10.1021/acs.jpcb.9b00403] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pavel Michal
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Radek Čelechovský
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Michal Dudka
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Josef Kapitán
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Milan Vůjtek
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Marie Berešová
- Department of Analytical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic
| | - Jaroslav Šebestík
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic
| | - Karthick Thangavel
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic
| | - Petr Bouř
- Department of Analytical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic
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21
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Baiardi A, Bloino J, Barone V. Time-Dependent Formulation of Resonance Raman Optical Activity Spectroscopy. J Chem Theory Comput 2018; 14:6370-6390. [PMID: 30281300 DOI: 10.1021/acs.jctc.8b00488] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
In this work, we extend the theoretical framework recently developed for the simulation of resonance Raman (RR) spectra of medium-to-large sized systems to its chiral counterpart, namely, resonance Raman optical activity (RROA). The theory is based on a time-dependent (TD) formulation, with the transition tensors obtained as half-Fourier transforms of the appropriate cross-correlation functions. The implementation has been kept as general as possible, supporting adiabatic and vertical models for the PES representation, both in Cartesian and internal coordinates, with the possible inclusion of Herzberg-Teller (HT) effects. Thanks to the integration of this TD-RROA procedure within a general-purpose quantum-chemistry program, both solvation and leading anharmonicity effects can be included in an effective way. The implementation is validated on one of the smallest chiral molecule (methyloxirane). Practical applications are illustrated with three medium-size organic molecules (naproxen-OCD3, quinidine and 2-Br-hexahelicene), whose simulated spectra are compared to the corresponding experimental data.
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Affiliation(s)
- Alberto Baiardi
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Julien Bloino
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Vincenzo Barone
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
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