Hierarchical Organisation on a Two-Dimensional Supramolecular Network

An On-Surface Reaction Confined within a Porous Molecular Template

On-surface reactions based on metal-catalysed Ullmann coupling have been successfully employed to synthesise a wide variety of covalently coupled structures. Substrate chemistry and topology are both known to effect the progression of an on-surface reaction; offering routes to control efficiency and selectivity. Here, we detail ultra-high vacuum scanning probe microscopy experiments showing that templating a catalytically active surface, via a supramolecular template, influences the reaction pathway of an on-surface Ullmann-type coupling reaction by inhibiting one potential intermediate structure and stabilising another.

Frontiers of supramolecular chemistry at solid surfaces

Supramolecular chemistry on solid surfaces represents an exciting field of research that continues to develop in new and unexpected directions.

Epitaxial Templating of C60 with a Molecular Monolayer

Commensurate epitaxial monolayers of truxenone on Cu (111) were employed to template the growth of monolayer and bilayer C60. Through the combination of STM imaging and LEED analysis we have demonstrated that C60 forms a commensurate 8 × 8 overlayer on truxenone/Cu (111). Bilayers of C60 retain the 8 × 8 periodicity of templated monolayers and although Kagome lattice arrangements are observed these are explained with combinations of 8 × 8 symmetry.

Resolving Intra- and Inter-Molecular Structure with Non-Contact Atomic Force Microscopy

A major challenge in molecular investigations at surfaces has been to image individual molecules, and the assemblies they form, with single-bond resolution. Scanning probe microscopy, with its exceptionally high resolution, is ideally suited to this goal. With the introduction of methods exploiting molecularly-terminated tips, where the apex of the probe is, for example, terminated with a single CO, Xe or H₂ molecule, scanning probe methods can now achieve higher resolution than ever before. In this review, some of the landmark results related to attaining intramolecular resolution with non-contact atomic force microscopy (NC-AFM) are summarised before focussing on recent reports probing molecular assemblies where apparent intermolecular features have been observed. Several groups have now highlighted the critical role that flexure in the tip-sample junction plays in producing the exceptionally sharp images of both intra- and apparent inter-molecular structure. In the latter case, the features have been identified as imaging artefacts, rather than real intermolecular bonds. This review discusses the potential for NC-AFM to provide exceptional resolution of supramolecular assemblies stabilised via a variety of intermolecular forces and highlights the potential challenges and pitfalls involved in interpreting bonding interactions.

Surface-based supramolecular chemistry using hydrogen bonds

CONSPECTUS: The arrangement of molecular species into extended structures remains the focus of much current chemical science. The organization of molecules on surfaces using intermolecular interactions has been studied to a lesser degree than solution or solid-state systems, and unanticipated observations still lie in store. Intermolecular hydrogen bonds are an attractive tool that can be used to facilitate the self-assembly of an extended structure through the careful design of target building blocks. Our studies have focused on the use of 3,4,9,10-perylene tetracarboxylic acid diimides (PTCDIs), and related functionalized analogues, to prepare extended arrays on surfaces. These molecules are ideal for such studies because they are specifically designed to interact with appropriate diaminopyridine-functionalized molecules, and related species, through complementary hydrogen bonds. Additionally, PTCDI species can be functionalized in the bay region of the molecule, facilitating modification of the self-assembled structures that can be prepared. Through a combination of PTCDI derivatives, sometimes in combination with melamine, porous two-dimensional arrays can be formed that can entrap guest molecules. The factors that govern the self-assembly processes of PTCDI derivatives are discussed, and the ability to construct suitable target arrays and host-specific molecular species, including fullerenes and transition metal clusters, is demonstrated.

Bestowing structure upon the pores of a supramolecular network

Trigonal molecules compartmentalise the pores of a honeycomb network of 3,4:9,10-tetracarboxylic diimide (PTCDI) and 1,3,5-triazine-2,4,6-triamine (melamine). Extending the 1,3,5-tri(phenylene-ethynylene)benzene core by a phenyl group allows for a well-defined accommodation of the molecule into two symmetry equivalent positions in the pore. The corresponding styryl or phenylene-ethynylene derivatives exceed the pore size and, thus, impede pore modification.

The structure and formation of hydrogen-bonded molecular networks on Au(111) surfaces revealed by scanning tunnelling and torsional-tapping atomic force microscopy

A comprehensive scanning probe microscopy study has been carried out to characterise 3,4,9,10-Perylenetetracarboxylic diimide (PTCDI)-melamine hydrogen-bonded networks deposited on Au(111)-surfaces. Both scanning tunnelling and atomic force microscopy were utilized. Such complementary analysis revealed a multilayered structure of the networks on the Au(111)-surface as opposed to a widely reported monolayer structure. Details of the network formation mechanism are presented. We have also demonstrated that despite the apparent network stability in ambient conditions it is unstable in aqueous solutions of pH 4.5 and 7.1.

Hierarchically organized bimolecular ladder network exhibiting guided one-dimensional diffusion

The assembly and dynamics of a hierarchical, bimolecular network of sexiphenyl dicarbonitrile and N,N'-diphenyl oxalic amide molecules on the Ag(111) surface are studied by scanning tunneling microscopy at controlled temperature. The network formation is governed by a two-step protocol involving hierarchic interactions, including a novel carbonitrile-oxalic amide bonding motif. For temperatures exceeding ~70 K, more weakly bound sexiphenyl dicarbonitrile molecules carry out one-dimensional diffusion guided by the more stable substructure of the network held together by the carbonitrile-oxalic amide bonding motif. A theoretical investigation at the ab initio level confirms the different binding energies of the two coupling motifs and rationalizes the network formation and the diffusion pathway.

Hierarchic self-assembly of nanoporous chiral networks with conformationally flexible porphyrins

We report the hierarchic design of homochiral 2D nanoporous networks under ultrahigh vacuum conditions on the Ag(111) surface by using a flexible porphyrin derivative as a primary unit. The conformational adaptation of the molecular module gives rise to two enantiomers upon 2D confinement, which self-assemble in enantiopure clusters made of three molecules reflecting chiral recognition, which constitute the secondary supramolecular building block mediating the formation of the tertiary complex open networks. Our results show that the creation of homochiral superstructures based on the hierarchical assembly of conformationally flexible molecular components constitutes a unique pathway toward the design of novel and functional chiral structures.

Templating molecular adsorption using a covalent organic framework

A two-dimensional nanoporous covalent organic framework can be prepared on a Au(111) substrate with near complete surface coverage and can be used to control the organisation of a sublimed layer of C(60).

Detection of melamine in milk powder and human urine

Detection of melamine has been developed by employing oxidized polycrystalline gold electrode (poly GE). The poly GE was directly utilized for the detection of melamine using differential pulse voltammetry (DPV) and impedimetry. Poly GE successfully showed the oxidation peak for melamine adsorption at 1.1 V is purely based on the detection of adsorption signals of melamine at the electrode surface. Furthermore, the melamine adsorbed poly GE surface has been studied using atomic force microscopy (AFM). Poly GE successfully detects the oxidation signals of melamine in the linear range of 0.05-1.31 ppm in laboratory samples. The proposed poly GE successfully detects the melamine signal (0.06-0.85 ppm) in tainted milk powder samples. It also exhibits two well-separated anodic oxidation peaks for urine and melamine in melamine-spiked human urine samples. Gas chromatography-mass spectrometry (GC-MS) was also employed for the successful detection of melamine in the above proposed real samples.

Tailoring two-dimensional PTCDA-melamine self-assembled architectures at room temperature by tuning molecular ratio

Engineering and tuning multi-component supramolecular self-assemblies on surfaces is one of the challenges of nanotechnology. We use scanning tunneling microscopy to investigate the influence of molecular ratio on the self-assembly of PTCDA-melamine structures on Au(111)-(22 x complex square root of 3). Our observations reveal that three different chiral supramolecular networks having a PTCDA:melamine ratio of 3:2, 1:2, 1:4 can be selectively created by tuning the ratio of molecules deposited on the surface. The 1:2 ratio network having melamine in excess has been observed previously but the 1:4 network has not yet been reported. In comparison, the multi-component 3:2 network having PTCDA in excess is a completely new structure.

Solubilized derivatives of perylenetetracarboxylic dianhydride (PTCDA) adsorbed on highly oriented pyrolytic graphite

The effect on 2D molecular crystallization caused by the addition of propylthioether side groups to the 3,4,9,10-perylenetetracarboxylic dianhydride (PTCDA) molecule is investigated using scanning tunneling microscopy (STM). The molecule was deposited from 1-phenyloctane onto highly oriented pyrolytic graphite (HOPG) and imaged at the liquid-solid interface. We observe a different structure to previously reported arrangements of PTCDA due to the presence of the propylthioether side groups which inhibits the formation of the herringbone phase. A model, supported by calculations based on density functional theory, is proposed in which molecules form rows stabilized by hydrogen bonding.

Scanning tunneling microscopy investigation of self-assembled CuPc/F16CuPc binary superstructures on graphite

The self-assembly of the binary molecular system comprising copper(II) phthalocyanine (CuPc) and copper-hexadecafluoro-phthalocyanine (F(16)CuPc) on graphite has been investigated by in situ low-temperature scanning tunneling microscopy (LT-STM). The adsorption of this binary molecular system on graphite results in the formation of a well-ordered chessboardlike nanopattern. The in-plane molecular orientation of the guest CuPc molecules can be tuned by varying the coverage. At low coverage, the sparse CuPc molecules are randomly embedded in the host F(16)CuPc monolayer, possessing two different in-plane orientations; as the CuPc coverage increases, the in-plane molecular orientations of CuPc and F(16)CuPc become unidirectional and a highly ordered chessboardlike pattern forms. Molecular dynamic (MD) simulation results suggest that the selective and directional intermolecular hydrogen bonding determines the in-plane molecular orientation as well as the supramolecular packing arrangement.

Template-directed molecular assembly on silicon carbide nanomesh: comparison between CuPc and pentacene

The template-directed assembly of two planar molecules (copper phthalocyanine (CuPc) and pentacene) on SiC nanomesh has been studied by scanning tunneling microscopy and photoelectron spectroscopy, respectively. Both molecules are trapped as single molecules in the cells of SiC nanomesh at low coverage. At high coverage, CuPc forms a highly ordered single-molecular array with identical symmetry and periodicity as the substrate, whereas pentacene forms a quasi-amorphous layer due to the random mixture of three different adsorption configurations. This difference in adsorption behavior is attributed to differences in molecular geometries. The measured changes of work functions reveal weak charge transfer between the molecules and substrate. Both molecules are preferentially adsorbed on the SiC nanomesh rather than on graphene. The CuPc single-molecular array possesses good long-range order, large area coverage, and a molecular density of over 3.0 x 10(13) molecules/cm(2).

Tunable two-dimensional binary molecular networks

A novel approach to constructing tunable and robust 2D binary molecular nanostructures on an inert graphite surface is presented. The guest molecules are embedded into a host molecular matrix and constrained via the formation of multiple intermolecular hydrogen bonds. By varying the binary molecular ratio and the molecular geometry, various molecular arrays with tunable intermolecular distances are fabricated. The results suggest a promising route for the fabrication of ordered and stable molecular nanostructure arrays for molecular sensors, molecular spintronic devices, and molecular p-n nanojunctions.

Supramolecular assembly of a 2D binary network of pentacene and phthalocyanine on Cu(100)

A crystalline nanoporous molecular network was tailored by supramolecular assembly of pentacene and F16CuPc on Cu(100). The structure and self-assembly mechanisms of the pure and binary layers were analyzed by STM. F16CuPc films and mixed layers of pentacene/F16CuPc in a ratio of 2:1 show two enantiomorphic chiral domains with high structural order in contrast to pentacene which exhibits no long-range order in pure films. A model of the epitaxial relationship on Cu(100) is given, which suggests C-F...H bonding as a possible driving force for the bimolecular self-assembly in addition to the still strong interaction between the substrate and the organic bilayer.

Carboxylic acids: versatile building blocks and mediators for two-dimensional supramolecular self-assembly

Two-dimensional (2D) supramolecular self-assembly of various organic molecules at the liquid-solid interface is presented and discussed with a focus on compounds that are primarily functionalized by carboxylic groups. The main analytical tool utilized is scanning tunneling microscopy (STM), a high-resolution real-space technique capable of readily providing full crystallographic information (i.e., not only lattice parameters but also number, type, and orientation of molecules within the unit cell). Carboxylic groups are of particular interest because their combined donor and acceptor character with regard to hydrogen bonds provides reliable intermolecular cross-linking, thereby facilitating the self-assembly of well-ordered, stable monolayers. By means of various homomeric (monomolecular) and heteromeric (here, bimolecular) examples, this feature article illustrates the influence of both molecular structure and external conditions (type of solvent, concentration, etc.) on monolayer self-assembly at the liquid-solid interface. A very intriguing aspect of interfacial self-assembly is that many systems are thermodynamically controlled (i.e., adsorbed molecules at the surface are in equilibrium with molecules dissolved in the supernatant liquid phase). This offers the unique possibility not only to steer the system reliably by intensive thermodynamic parameters such as temperature and concentration but also to gain fundamental knowledge about decisive processes and steps in supramolecular self-assembly.

Self-assembly of optical molecules with supramolecular concepts

Fabrication of nano-sized objects is one of the most important issues in nanoscience and nanotechnology. Soft nanomaterials with flexible properties have been given much attention and can be obtained through bottom-up processing from functional molecules, where self-assembly based on supramolecular chemistry and designed assembly have become crucial processes and techniques. Among the various functional molecules, dyes have become important materials in certain areas of nanotechnology and their self-assembling behaviors have been actively researched. In this short review, we briefly introduce recent progress in self-assembly of optical molecules and dyes, based mainly on supramolecular concepts. The introduced examples are classified into four categories: self-assembly of (i) low-molecular-weight dyes and (ii) polymeric dyes and dye self-assembly (iii) in nanoscale architectures and (iv) at surfaces.

Entrapment of decanethiol in a hydrogen-bonded bimolecular template

We have used scanning tunneling microscopy to investigate the deposition of 1-decanethiol onto a bimolecular self-assembled network composed of PTCDI (perylene tetracarboxylic diimide) and melamine on a Au(111) surface. A new laterally organized phase in which the pores of a parallelogram bimolecular arrangement trap two decanethiol molecules is identified. Disruption of the hexagonal PTCDI-melamine network arrangement after decanethiol deposition is also observed, providing insights about the interplay between supramolecular and substrate-adsorbate interactions.

Chiral kagomé lattice from simple ditopic molecular bricks

Self-assembly techniques allow for the fabrication of highly organized architectures with atomic-level precision. Here, we report on molecular-level scanning tunneling microscopy observations demonstrating the supramolecular engineering of complex, regular, and long-range ordered periodic networks on a surface atomic lattice using simple linear molecular bricks. The length variation of the employed de novo synthesized linear dicarbonitrile polyphenyl molecules translates to distinct changes of the bonding motifs that lead to hierarchic order phenomena and unexpected changes of the surface tessellations. The achieved 2D organic networks range from a close-packed chevron pattern via a rhombic network to a hitherto unobserved supramolecular chiral kagomé lattice.

Directing two-dimensional molecular crystallization using guest templates

The use of a coronene guest template directs the formation of a 2D Kagomé network in preference to alternative close packed and parallel hydrogen-bonded structures of tetracarboxylic acid tectons self-assembled from solution on a graphite surface.

Orientationally ordered C60 on p-sexiphenyl nanostripes on Ag111

Long range orientational ordering within C(60) monolayers is observed on p-sexithiophene (6P) monolayer nanostripes on Ag(111) at 77 K. Low-temperature scanning tunneling microscopy studies reveal that the C(60)-6P intermolecular interaction constrains all C(60) molecules to adsorb on their hexagons atop 6P molecules. The orientation-dependent bond-to-bond Coulomb interaction between charge deficient single bonds and double bonds with excess charge in neighboring C(60) molecules results in the in-plane orientational ordering and contributes to the lowering of the total energy of the orientationally ordered C(60) islands.