Prediction of Rate Constants for Gas‐Phase Reactions of Nitrate Radical with Organic Compounds: A New Structure–Activity Relationship

Highly Oxygenated Organic Nitrates Formed from NO3 Radical-Initiated Oxidation of β-Pinene

The reactions of biogenic volatile organic compounds (BVOC) with the nitrate radicals (NO₃) are major night-time sources of organic nitrates and secondary organic aerosols (SOA) in regions influenced by BVOC and anthropogenic emissions. In this study, the formation of gas-phase highly oxygenated organic molecules-organic nitrates (HOM-ON) from NO₃-initiated oxidation of a representative monoterpene, β-pinene, was investigated in the SAPHIR chamber (Simulation of Atmosphere PHotochemistry In a large Reaction chamber). Six monomer (C = 7-10, N = 1-2, O = 6-16) and five accretion product (C = 17-20, N = 2-4, O = 9-22) families were identified and further classified into first- or second-generation products based on their temporal behavior. The time lag observed in the peak concentrations between peroxy radicals containing odd and even number of oxygen atoms, as well as between radicals and their corresponding termination products, provided constraints on the HOM-ON formation mechanism. The HOM-ON formation can be explained by unimolecular or bimolecular reactions of peroxy radicals. A dominant portion of carbonylnitrates in HOM-ON was detected, highlighting the significance of unimolecular termination reactions by intramolecular H-shift for the formation of HOM-ON. A mean molar yield of HOM-ON was estimated to be 4.8% (-2.6%/+5.6%), suggesting significant HOM-ON contributions to the SOA formation.

Gas- and Particle-Phase Products and Their Mechanisms of Formation from the Reaction of Δ-3-Carene with NO3 Radicals

Monoterpenes are a major component of the large quantities of biogenic volatile organic compounds that are emitted to the atmosphere each year. They have a variety of structures, which influences their subsequent reactions with OH radicals, O₃, or NO₃ radicals and the tendency for these reactions to form secondary organic aerosol (SOA). Here we report the results of an environmental chamber study of the reaction of Δ-3-carene, an abundant unsaturated C₁₀ bicyclic monoterpene, with NO₃ radicals, a major nighttime oxidant. Gas- and particle-phase reaction products were analyzed in real time and offline by using mass spectrometry, gas and liquid chromatography, infrared spectroscopy, and derivatization-spectrophotometric methods. The results were used to identify and quantify functional groups and molecular products and to develop gas- and particle-phase reaction mechanisms to explain their formation. Identified gas-phase products were all first-generation ring-retaining and ring-opened compounds (ten C₁₀ and one C₉ monomers) with 2-4 functional groups and one C₂₀ dinitrooxydialkyl peroxide dimer. Upon partitioning to the particle phase, the monomers reacted further to form oligomers consisting almost entirely of C₂₀ acetal and hemiacetal dimers, with those formed from a hydroxynitrate and hydroxycarbonyl nitrate comprising more than 50% of the SOA mass. The SOA contained an average of 0.94, 0.71, 0.15, 0.11, 0.16, 0.13, and 7.80 nitrate, carbonyl, hydroxyl, carboxyl, ester, peroxide, and methylene groups per C₁₀ monomer and was formed with a mass yield of 56%. These results have important similarities and differences to those obtained from a previous similar study of the reaction of β-pinene and yield new insights into the effects of monoterpene structure on gas- and particle-phase reactions that can lead to the formation of a large variety of multifunctional products and significant amounts of SOA.

Evaluation of a New Chemical Mechanism for 2-Amino-2-methyl-1-propanol in a Reactive Environment from CSIRO Smog Chamber Experiments

Amines are considered as an emerging class of atmospheric pollutants that are of great importance to atmospheric chemistry and new particle formation. As a typical amine, 2-amino-2-methyl-1-propanol (AMP) is one of the proposed solvents for capturing CO₂ from flue gas streams in amine-based post-combustion CO₂ capture plants, and it is expected to result in AMP emission and secondary product formation in the atmosphere. However, the current knowledge of its atmospheric chemistry and kinetics is poorly understood, particularly in a reactive environment. In this work, we used the CSIRO smog chamber to study the photo-oxidation of AMP in the presence of volatile organic compound (VOC)-NOx surrogate mixtures over a range of initial amine concentrations. O₃ formation was significantly inhibited when AMP was added to the surrogate VOC-NOx mixtures, implying that AMP could alter known atmospheric chemical reaction pathways and the prevailing reactivity. Simultaneously, a large amount of AMP-derived secondary aerosol was formed, with a considerably high aerosol mass yield (i.e., ratio of aerosol formed to reacted AMP) of 1.06 ± 0.20. Based on updated knowledge of its kinetics, oxidation pathways, and product yields, we have developed a new mechanism (designated as CSIAMP-19), integrated it into the Carbon Bond 6 (CB6) chemical mechanism, and evaluated it against available smog chamber data. Compared with the existing AMP mechanism (designated as CarterAMP-08), the modified CB6 with CSIAMP-19 mechanism improves prediction against AMP-VOC-NOx experiments across a range of initial AMP concentrations, within ±10% model error for gross ozone production. Our results contribute to scientific understanding of AMP photochemistry and to the development of the chemical mechanism of other amines. Once some potential limitations are considered, the updated AMP reaction scheme can be further embedded into the chemical transport model for regional modeling scenarios where AMP-related emissions are of concern.

Nighttime Chemical Transformation in Biomass Burning Plumes: A Box Model Analysis Initialized with Aircraft Observations

Biomass burning (BB) is a large source of reactive compounds in the atmosphere. While the daytime photochemistry of BB emissions has been studied in some detail, there has been little focus on nighttime reactions despite the potential for substantial oxidative and heterogeneous chemistry. Here, we present the first analysis of nighttime aircraft intercepts of agricultural BB plumes using observations from the NOAA WP-3D aircraft during the 2013 Southeast Nexus (SENEX) campaign. We use these observations in conjunction with detailed chemical box modeling to investigate the formation and fate of oxidants (NO₃, N₂O₅, O₃, and OH) and BB volatile organic compounds (BBVOCs), using emissions representative of agricultural burns (rice straw) and western wildfires (ponderosa pine). Field observations suggest NO₃ production was approximately 1 ppbv hr^-1, while NO₃ and N₂O₅ were at or below 3 pptv, indicating rapid NO₃/N₂O₅ reactivity. Model analysis shows that >99% of NO₃/N₂O₅ loss is due to BBVOC + NO₃ reactions rather than aerosol uptake of N₂O₅. Nighttime BBVOC oxidation for rice straw and ponderosa pine fires is dominated by NO₃ (72, 53%, respectively) but O₃ oxidation is significant (25, 43%), leading to roughly 55% overnight depletion of the most reactive BBVOCs and NO₂.

Identification and Quantitation of Aerosol Products of the Reaction of β-Pinene with NO3 Radicals and Implications for Gas- and Particle-Phase Reaction Mechanisms

Substantial amounts of gas- and particle-phase organic nitrates have been reported in field studies of atmospheric chemistry conducted around the world, and it has been proposed that a significant fraction of these may be formed from the nighttime reaction of monoterpenes with NO₃ radicals. In the study presented here, β-pinene (a major global monoterpene emission) was reacted with NO₃ radicals in an environmental chamber and the molecular and functional group composition of the resulting secondary organic aerosol (SOA) was determined using a variety of methods. Eight products, which comprised ∼95% of the SOA mass, were identified and quantified. More than 90% (by mass) of these consisted of acetal heterodimers and heterotrimers that were apparently formed through acid-catalyzed reactions in phase-separated particles. The molar yield of the major oligomer was 16.7%, and the yields of the other six and the single monomer ranged from 1.1% to 2.9%, for a total yield of 30.7%. From these analyses it was determined that the yields of the two major monomer building blocks were 25.9% and 23.6%, and that those of the other four ranged from 2.0% to 4.8%, for a total monomer yield of 62.4%. The measured SOA mass yield was 88.9% and the O/C, N/C, and H/C ratios, molecular weight, and density of the SOA calculated from the results of functional group analysis of the bulk SOA were 0.40, 0.11, 1.79, 217 g mol^-1, and 1.21 g cm^-3, respectively, similar to values estimated from results of molecular analysis. The results demonstrate the combined importance of RO₂^• + RO₂^• reactions, alkoxy radical decomposition and isomerization, and acid-catalyzed particle-phase reactions in the NO₃ radical-initiated oxidation of β-pinene and subsequent formation of SOA and should be useful for understanding reactions of other monoterpenes and for developing models for the laboratory and atmosphere.

Gas-Phase Reactions of Isoprene and Its Major Oxidation Products

Isoprene carries approximately half of the flux of non-methane volatile organic carbon emitted to the atmosphere by the biosphere. Accurate representation of its oxidation rate and products is essential for quantifying its influence on the abundance of the hydroxyl radical (OH), nitrogen oxide free radicals (NO _x), ozone (O₃), and, via the formation of highly oxygenated compounds, aerosol. We present a review of recent laboratory and theoretical studies of the oxidation pathways of isoprene initiated by addition of OH, O₃, the nitrate radical (NO₃), and the chlorine atom. From this review, a recommendation for a nearly complete gas-phase oxidation mechanism of isoprene and its major products is developed. The mechanism is compiled with the aims of providing an accurate representation of the flow of carbon while allowing quantification of the impact of isoprene emissions on HO _x and NO _x free radical concentrations and of the yields of products known to be involved in condensed-phase processes. Finally, a simplified (reduced) mechanism is developed for use in chemical transport models that retains the essential chemistry required to accurately simulate isoprene oxidation under conditions where it occurs in the atmosphere-above forested regions remote from large NO _x emissions.

Atmospheric oxidation of halogenated aromatics: comparative analysis of reaction mechanisms and reaction kinetics

Atmospheric transport is the major route for global distribution of semi-volatile compounds such as halogenated aromatics as well as their major exposure route for humans. Their major atmospheric removal process is oxidation by hydroxyl radicals. There is very little information on the reaction mechanism or reaction-path dynamics of atmospheric degradation of halogenated benzenes. Furthermore, the measured reaction rate constants are missing for the range of environmentally relevant temperatures, i.e. 230-330 K. A series of recent theoretical studies have provided those valuable missing information for fluorobenzene, chlorobenzene, hexafluorobenzene and hexachlorobenzene. Their comparative analysis has provided additional and more general insight into the mechanism of those important tropospheric degradation processes as well as into the mobility, transport and atmospheric fate of halogenated aromatic systems. It was demonstrated for the first time that the addition of hydroxyl radicals to monohalogenated as well as to perhalogenated benzenes proceeds indirectly, via a prereaction complex and its formation and dynamics have been characterized including the respective transition-state. However, in fluorobenzene and chlorobenzene reactions hydroxyl radical hydrogen is pointing approximately to the center of the aromatic ring while in the case of hexafluorobenzene and hexachlorobenzene, unexpectedly, the oxygen is directed towards the center of the aromatic ring. The reliable rate constants are now available for all environmentally relevant temperatures for the tropospheric oxidation of fluorobenzene, chlorobenzene, hexafluorobenzene and hexachlorobenzene while pentachlorophenol, a well-known organic micropollutant, seems to be a major stable product of tropospheric oxidation of hexachlorobenzene. Their calculated tropospheric lifetimes show that fluorobenzene and chlorobenzene are easily removed from the atmosphere and do not have long-range transport potential while hexafluorobenzene seems to be a potential POP chemical and hexachlorobenzene is clearly a typical persistent organic pollutant.

Nitrate radicals and biogenic volatile organic compounds: oxidation, mechanisms, and organic aerosol

Oxidation of biogenic volatile organic compounds (BVOC) by the nitrate radical (NO₃) represents one of the important interactions between anthropogenic emissions related to combustion and natural emissions from the biosphere. This interaction has been recognized for more than 3 decades, during which time a large body of research has emerged from laboratory, field, and modeling studies. NO₃-BVOC reactions influence air quality, climate and visibility through regional and global budgets for reactive nitrogen (particularly organic nitrates), ozone, and organic aerosol. Despite its long history of research and the significance of this topic in atmospheric chemistry, a number of important uncertainties remain. These include an incomplete understanding of the rates, mechanisms, and organic aerosol yields for NO₃-BVOC reactions, lack of constraints on the role of heterogeneous oxidative processes associated with the NO₃ radical, the difficulty of characterizing the spatial distributions of BVOC and NO₃ within the poorly mixed nocturnal atmosphere, and the challenge of constructing appropriate boundary layer schemes and non-photochemical mechanisms for use in state-of-the-art chemical transport and chemistry-climate models. This review is the result of a workshop of the same title held at the Georgia Institute of Technology in June 2015. The first half of the review summarizes the current literature on NO₃-BVOC chemistry, with a particular focus on recent advances in instrumentation and models, and in organic nitrate and secondary organic aerosol (SOA) formation chemistry. Building on this current understanding, the second half of the review outlines impacts of NO₃-BVOC chemistry on air quality and climate, and suggests critical research needs to better constrain this interaction to improve the predictive capabilities of atmospheric models.

A QSAR for the prediction of rate constants for the reaction of VOCs with nitrate radicals

A QSAR for the prediction of rate constants for the degradation of volatile organic compounds by nitrate radicals is developed using the Partial Least Squares technique. The QSAR is based on experimental data published in the literature for 260 compounds. They are modeled by a set of calculated descriptors from standard descriptor generation tools and from quantum chemistry. Out of several diversity-based partitionings of the data set a diverse set of 99 compounds turned out to be the optimum choice with regard to simplicity and performance. The final QSAR model is characterized by r(2) = 0.831 (fit) and q(2) = 0.823 (prediction), and by an r(2)pred = 0.862 for the n = 155 external validation set. The QSAR needs 3 latent variables. The most important descriptors for the QSAR are the ionization potential, obtained from density functional theory, and the energy of the highest occupied molecular orbital, which are modulated by fingerprints indicating the presence of specific molecular fragments like functional groups or ring systems. The applicability domain of the new QSAR was studied for some compound classes which are important for the crop protection industry, including (di)hydroxbenzenes and heterocyclic compounds.

QSARINS-chem: Insubria datasets and new QSAR/QSPR models for environmental pollutants in QSARINS

A database of environmentally hazardous chemicals, collected and modeled by QSAR by the Insubria group, is included in the updated version of QSARINS, software recently proposed for the development and validation of QSAR models by the genetic algorithm-ordinary least squares method. In this version, a module, named QSARINS-Chem, includes several datasets of chemical structures and their corresponding endpoints (physicochemical properties and biological activities). The chemicals are accessible in different ways (CAS, SMILES, names and so forth) and their three-dimensional structure can be visualized. Some of the QSAR models, previously published by our group, have been redeveloped using the free online software for molecular descriptor calculation, PaDEL-Descriptor. The new models can be easily applied for future predictions on chemicals without experimental data, also verifying the applicability domain to new chemicals. The QSAR model reporting format (QMRF) of these models is also here downloadable. Additional chemometric analyses can be done by principal component analysis and multicriteria decision making for screening and ranking chemicals to prioritize the most dangerous.

On rates and mechanisms of OH and O3 reactions with isoprene-derived hydroxy nitrates

Eight distinct hydroxy nitrates are stable products of the first step in the atmospheric oxidation of isoprene by OH. The subsequent chemical fate of these molecules affects global and regional production of ozone and aerosol as well as the location of nitrogen deposition. We synthesized and purified 3 of the 8 isoprene hydroxy nitrate isomers: (E/Z)-2-methyl-4-nitrooxybut-2-ene-1-ol and 3-methyl-2-nitrooxybut-3-ene-1-ol. Oxidation of these molecules by OH and ozone was studied using both chemical ionization mass spectrometry and thermo-dissociation laser induced fluorescence. The OH reaction rate constants at 300 K measured relative to propene at 745 Torr are (1.1 ± 0.2) × 10(-10) cm(3) molecule(-1) s(-1) for both the E and Z isomers and (4.2 ± 0.7) × 10(-11) cm(3) molecule(-1) s(-1) for the third isomer. The ozone reaction rate constants for (E/Z)-2-methyl-4-nitrooxybut-2-ene-1-ol are (2.7 ± 0.5) × 10(-17) and (2.9 ± 0.5) × 10(-17) cm(3) molecule(-1) s(-1), respectively. 3-Methyl-2-nitrooxybut-3-ene-1-ol reacts with ozone very slowly, within the range of (2.5-5) × 10(-19) cm(3) molecule(-1) s(-1). Reaction pathways, product yields, and implications for atmospheric chemistry are discussed. A condensed mechanism suitable for use in atmospheric chemistry models is presented.

Kinetic investigation of the OH radical and Cl atom initiated degradation of unsaturated ketones at atmospheric pressure and 298 K

Rate coefficients for the reactions of hydroxyl radicals and chlorine atoms with 4-hexen-3-one, 5-hexen-2-one, and 3-penten-2-one have been determined at 298 ± 2 K and atmospheric pressure of air. Rate coefficients for the compounds were determined using a relative kinetic technique with different reference compounds. The experiments were performed in a large photoreactor (480 L) using in situ FTIR spectroscopy to monitor the decay of reactants. From the different measurements the following rate coefficients (in units of cm(3) molecule(-1) s(-1)) have been determined: k(1)(OH + 4-hexen-3-one) = (9.04 ± 2.12) × 10(-11), k(2)(OH + 5-hexen-2-one) = (5.18 ± 1.27) × 10(-11), k(3)(OH + 3-penten-2-one) = (7.22 ± 1.74) × 10(-11), k(4)(Cl + 4-hexen-3-one) = (3.00 ± 0.58) × 10(-10), k(5)(Cl + 5-hexen-2-one) = (3.15 ± 0.50) × 10(-10) and k(6)(Cl + 3-penten-2-one) = (2.53 ± 0.54) × 10(-10). The reactivity of the double bond in alkenes and unsaturated ketones at 298 K toward addition of OH radicals and Cl atoms are compared and discussed. In addition, a correlation between the reactivity of the unsaturated ketones toward OH radicals and the HOMO of the compounds is presented. On the basis of the kinetic measurements, the tropospheric lifetimes of 4-hexen-3-one, 5-hexen-2-one, and 3-penten-2-one with respect to their reaction with hydroxyl radicals are estimated to be between 2 and 3 h.