1
|
Peters J, Oliva R, Caliò A, Oger P, Winter R. Effects of Crowding and Cosolutes on Biomolecular Function at Extreme Environmental Conditions. Chem Rev 2023; 123:13441-13488. [PMID: 37943516 DOI: 10.1021/acs.chemrev.3c00432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
The extent of the effect of cellular crowding and cosolutes on the functioning of proteins and cells is manifold and includes the stabilization of the biomolecular systems, the excluded volume effect, and the modulation of molecular dynamics. Simultaneously, it is becoming increasingly clear how important it is to take the environment into account if we are to shed light on biological function under various external conditions. Many biosystems thrive under extreme conditions, including the deep sea and subseafloor crust, and can take advantage of some of the effects of crowding. These relationships have been studied in recent years using various biophysical techniques, including neutron and X-ray scattering, calorimetry, FTIR, UV-vis and fluorescence spectroscopies. Combining knowledge of the structure and conformational dynamics of biomolecules under extreme conditions, such as temperature, high hydrostatic pressure, and high salinity, we highlight the importance of considering all results in the context of the environment. Here we discuss crowding and cosolute effects on proteins, nucleic acids, membranes, and live cells and explain how it is possible to experimentally separate crowding-induced effects from other influences. Such findings will contribute to a better understanding of the homeoviscous adaptation of organisms and the limits of life in general.
Collapse
Affiliation(s)
- Judith Peters
- Univ. Grenoble Alpes, CNRS, LiPhy, 140 rue de la physique, 38400 St Martin d'Hères, France
- Institut Laue Langevin, 71 avenue des Martyrs, 38000 Grenoble, France
- Institut Universitaire de France, 75005 Paris, France
| | - Rosario Oliva
- Department of Chemical Sciences, University of Naples Federico II, Via Cintia 4, 80126 Naples, Italy
| | - Antonino Caliò
- European Synchrotron Radiation Facility, 71 avenue des Martyrs, 38000 Grenoble, France
| | - Philippe Oger
- INSA Lyon, Universite Claude Bernard Lyon1, CNRS, UMR5240, 69621 Villeurbanne, France
| | - Roland Winter
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, Dortmund, Otto-Hahn-Str. 4a, D-44227 Dortmund, Germany
| |
Collapse
|
2
|
Diaz J, Pellois JP. Deciphering variations in the endocytic uptake of a cell-penetrating peptide: the crucial role of cell culture protocols. Cytotechnology 2023; 75:473-490. [PMID: 37841959 PMCID: PMC10575844 DOI: 10.1007/s10616-023-00591-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 08/24/2023] [Indexed: 10/17/2023] Open
Abstract
Delivery tools, including cell-penetrating peptides (CPPs), are often inefficient due to a combination of poor endocytosis and endosomal escape. Aspects that impact the delivery of CPPs are typically characterized using tissue culture models. One problem of using cell culture is that cell culture protocols have the potential to contribute to endosomal uptake and endosomal release of CPPs. Hence, a systematic study to identify which aspects of cell culturing techniques impact the endocytic uptake of a typical CPP, the TMR-TAT peptide (peptide sequence derived from HIV1-TAT with the N-terminus labeled with tetramethylrhodamine), was conducted. Aspects of cell culturing protocols previously found to generally modulate endocytosis, such as cell density, washing steps, and cell aging, did not affect TMR-TAT endocytosis. In contrast, cell dissociation methods, media, temperature, serum starvation, and media composition all contributed to changes in uptake. To establish a range of endocytosis achievable by different cell culture protocols, TMR-TAT uptake was compared among protocols. These protocols led to changes in uptake of more than 13-fold, indicating that differences in cell culturing techniques have a cumulative effect on CPP uptake. Taken together this study highlights how different protocols can influence the amount of endocytic uptake of TMR-TAT. Additionally, parameters that can be exploited to improve CPP accumulation in endosomes were identified. The protocols identified herein have the potential to be paired with other delivery enhancing strategies to improve overall delivery efficiency of CPPs. Supplementary Information The online version contains supplementary material available at 10.1007/s10616-023-00591-1.
Collapse
Affiliation(s)
- Joshua Diaz
- Department of Biochemistry and Biophysics, Texas A&M University, Room 430, 300 Olsen Blvd, College Station, TX 77843-2128 USA
| | - Jean-Philippe Pellois
- Department of Biochemistry and Biophysics, Texas A&M University, Room 430, 300 Olsen Blvd, College Station, TX 77843-2128 USA
- Department of Chemistry, Texas A&M University, College Station, TX 77843 USA
| |
Collapse
|
3
|
Knop JM, Mukherjee S, Jaworek MW, Kriegler S, Manisegaran M, Fetahaj Z, Ostermeier L, Oliva R, Gault S, Cockell CS, Winter R. Life in Multi-Extreme Environments: Brines, Osmotic and Hydrostatic Pressure─A Physicochemical View. Chem Rev 2023; 123:73-104. [PMID: 36260784 DOI: 10.1021/acs.chemrev.2c00491] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Elucidating the details of the formation, stability, interactions, and reactivity of biomolecular systems under extreme environmental conditions, including high salt concentrations in brines and high osmotic and high hydrostatic pressures, is of fundamental biological, astrobiological, and biotechnological importance. Bacteria and archaea are able to survive in the deep ocean or subsurface of Earth, where pressures of up to 1 kbar are reached. The deep subsurface of Mars may host high concentrations of ions in brines, such as perchlorates, but we know little about how these conditions and the resulting osmotic stress conditions would affect the habitability of such environments for cellular life. We discuss the combined effects of osmotic (salts, organic cosolvents) and hydrostatic pressures on the structure, stability, and reactivity of biomolecular systems, including membranes, proteins, and nucleic acids. To this end, a variety of biophysical techniques have been applied, including calorimetry, UV/vis, FTIR and fluorescence spectroscopy, and neutron and X-ray scattering, in conjunction with high pressure techniques. Knowledge of these effects is essential to our understanding of life exposed to such harsh conditions, and of the physical limits of life in general. Finally, we discuss strategies that not only help us understand the adaptive mechanisms of organisms that thrive in such harsh geological settings but could also have important ramifications in biotechnological and pharmaceutical applications.
Collapse
Affiliation(s)
- Jim-Marcel Knop
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Sanjib Mukherjee
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Michel W Jaworek
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Simon Kriegler
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Magiliny Manisegaran
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Zamira Fetahaj
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Lena Ostermeier
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| | - Rosario Oliva
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany.,Department of Chemical Sciences, University of Naples Federico II, Via Cintia 4, 80126Naples, Italy
| | - Stewart Gault
- UK Centre for Astrobiology, SUPA School of Physics and Astronomy, University of Edinburgh, James Clerk Maxwell Building, Peter Guthrie Tait Road, EH9 3FDEdinburgh, United Kingdom
| | - Charles S Cockell
- UK Centre for Astrobiology, SUPA School of Physics and Astronomy, University of Edinburgh, James Clerk Maxwell Building, Peter Guthrie Tait Road, EH9 3FDEdinburgh, United Kingdom
| | - Roland Winter
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44221Dortmund, Germany
| |
Collapse
|
4
|
Oliva R, Winter R. Harnessing Pressure-Axis Experiments to Explore Volume Fluctuations, Conformational Substates, and Solvation of Biomolecular Systems. J Phys Chem Lett 2022; 13:12099-12115. [PMID: 36546666 DOI: 10.1021/acs.jpclett.2c03186] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Intrinsic thermodynamic fluctuations within biomolecules are crucial for their function, and flexibility is one of the strategies that evolution has developed to adapt to extreme environments. In this regard, pressure perturbation is an important tool for mechanistically exploring the causes and effects of volume fluctuations in biomolecules and biomolecular assemblies, their role in biomolecular interactions and reactions, and how they are affected by the solvent properties. High hydrostatic pressure is also a key parameter in the context of deep-sea and subsurface biology and the study of the origin and physical limits of life. We discuss the role of pressure-axis experiments in revealing intrinsic structural fluctuations as well as high-energy conformational substates of proteins and other biomolecular systems that are important for their function and provide some illustrative examples. We show that the structural and dynamic information obtained from such pressure-axis studies improves our understanding of biomolecular function, disease, biological evolution, and adaptation.
Collapse
Affiliation(s)
- Rosario Oliva
- Department of Chemistry and Chemical Biology, Physical Chemistry I, Biophysical Chemistry, TU Dortmund University, Otto-Hahn-Strasse 6, Dortmund44227, Germany
- Department of Chemical Sciences, University of Naples Federico II, Via Cintia 4, 80126Naples, Italy
| | - Roland Winter
- Department of Chemistry and Chemical Biology, Physical Chemistry I, Biophysical Chemistry, TU Dortmund University, Otto-Hahn-Strasse 6, Dortmund44227, Germany
| |
Collapse
|
5
|
Khachaturyan G, Holle AW, Ende K, Frey C, Schwederski HA, Eiseler T, Paschke S, Micoulet A, Spatz JP, Kemkemer R. Temperature-sensitive migration dynamics in neutrophil-differentiated HL-60 cells. Sci Rep 2022; 12:7053. [PMID: 35488042 PMCID: PMC9054779 DOI: 10.1038/s41598-022-10858-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 04/13/2022] [Indexed: 11/09/2022] Open
Abstract
Cell migration plays an essential role in wound healing and inflammatory processes inside the human body. Peripheral blood neutrophils, a type of polymorphonuclear leukocyte (PMN), are the first cells to be activated during inflammation and subsequently migrate toward an injured tissue or infection site. This response is dependent on both biochemical signaling and the extracellular environment, one aspect of which includes increased temperature in the tissues surrounding the inflammation site. In our study, we analyzed temperature-dependent neutrophil migration using differentiated HL-60 cells. The migration speed of differentiated HL-60 cells was found to correlate positively with temperature from 30 to 42 °C, with higher temperatures inducing a concomitant increase in cell detachment. The migration persistence time of differentiated HL-60 cells was higher at lower temperatures (30-33 °C), while the migration persistence length stayed constant throughout the temperature range. Coupled with the increased speed observed at high temperatures, this suggests that neutrophils are primed to migrate more effectively at the elevated temperatures characteristic of inflammation. Temperature gradients exist on both cell and tissue scales. Taking this into consideration, we also investigated the ability of differentiated HL-60 cells to sense and react to the presence of temperature gradients, a process known as thermotaxis. Using a two-dimensional temperature gradient chamber with a range of 27-43 °C, we observed a migration bias parallel to the gradient, resulting in both positive and negative thermotaxis. To better mimic the extracellular matrix (ECM) environment in vivo, a three-dimensional collagen temperature gradient chamber was constructed, allowing observation of biased neutrophil-like differentiated HL-60 migration toward the heat source.
Collapse
Affiliation(s)
- Galina Khachaturyan
- Department of Cellular Biophysics, Max Planck Institute for Medical Research, 69120, Heidelberg, Germany
- Department of Biophysical Chemistry, University of Heidelberg, 69120, Heidelberg, Germany
| | - Andrew W Holle
- Department of Cellular Biophysics, Max Planck Institute for Medical Research, 69120, Heidelberg, Germany
- Mechanobiology Institute, National University of Singapore, 117411, Singapore, Republic of Singapore
- Department of Biomedical Engineering, National University of Singapore, 117411, Singapore, Republic of Singapore
| | - Karen Ende
- School of Applied Chemistry, Reutlingen University, Alteburgstrasse 150, 72762, Reutlingen, Germany
| | - Christoph Frey
- Department of Cellular Biophysics, Max Planck Institute for Medical Research, 69120, Heidelberg, Germany
- Department of Biophysical Chemistry, University of Heidelberg, 69120, Heidelberg, Germany
| | - Heiko A Schwederski
- School of Applied Chemistry, Reutlingen University, Alteburgstrasse 150, 72762, Reutlingen, Germany
| | - Tim Eiseler
- Internal Medicine I, University Clinic Ulm, 89081, Ulm, Germany
| | - Stephan Paschke
- General and Visceral Surgery, University Clinic Ulm, 89081, Ulm, Germany
| | - Alexandre Micoulet
- Department of Cellular Biophysics, Max Planck Institute for Medical Research, 69120, Heidelberg, Germany
- Department of Biophysical Chemistry, University of Heidelberg, 69120, Heidelberg, Germany
| | - Joachim P Spatz
- Department of Cellular Biophysics, Max Planck Institute for Medical Research, 69120, Heidelberg, Germany
- Department of Biophysical Chemistry, University of Heidelberg, 69120, Heidelberg, Germany
| | - Ralf Kemkemer
- Department of Cellular Biophysics, Max Planck Institute for Medical Research, 69120, Heidelberg, Germany.
- School of Applied Chemistry, Reutlingen University, Alteburgstrasse 150, 72762, Reutlingen, Germany.
| |
Collapse
|
6
|
Park J, Kravchuk P, Krishnaprasad A, Roy T, Kang EH. Graphene Enhances Actin Filament Assembly Kinetics and Modulates NIH-3T3 Fibroblast Cell Spreading. Int J Mol Sci 2022; 23:509. [PMID: 35008935 PMCID: PMC8745492 DOI: 10.3390/ijms23010509] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/28/2021] [Accepted: 12/30/2021] [Indexed: 01/01/2023] Open
Abstract
Actin plays critical roles in various cellular functions, including cell morphogenesis, differentiation, and movement. The assembly of actin monomers into double-helical filaments is regulated in surrounding microenvironments. Graphene is an attractive nanomaterial that has been used in various biomaterial applications, such as drug delivery cargo and scaffold for cells, due to its unique physical and chemical properties. Although several studies have shown the potential effects of graphene on actin at the cellular level, the direct influence of graphene on actin filament dynamics has not been studied. Here, we investigate the effects of graphene on actin assembly kinetics using spectroscopy and total internal reflection fluorescence microscopy. We demonstrate that graphene enhances the rates of actin filament growth in a concentration-dependent manner. Furthermore, cell morphology and spreading are modulated in mouse embryo fibroblast NIH-3T3 cultured on a graphene surface without significantly affecting cell viability. Taken together, these results suggest that graphene may have a direct impact on actin cytoskeleton remodeling.
Collapse
Affiliation(s)
- Jinho Park
- NanoScience Technology Center, University of Central Florida, Orlando, FL 32826, USA; (J.P.); (P.K.); (A.K.); (T.R.)
- Department of Materials Science and Engineering, University of Central Florida, Orlando, FL 32816, USA
| | - Pavlo Kravchuk
- NanoScience Technology Center, University of Central Florida, Orlando, FL 32826, USA; (J.P.); (P.K.); (A.K.); (T.R.)
| | - Adithi Krishnaprasad
- NanoScience Technology Center, University of Central Florida, Orlando, FL 32826, USA; (J.P.); (P.K.); (A.K.); (T.R.)
- Department of Electrical and Computer Engineering, University of Central Florida, Orlando, FL 32816, USA
| | - Tania Roy
- NanoScience Technology Center, University of Central Florida, Orlando, FL 32826, USA; (J.P.); (P.K.); (A.K.); (T.R.)
- Department of Materials Science and Engineering, University of Central Florida, Orlando, FL 32816, USA
- Department of Electrical and Computer Engineering, University of Central Florida, Orlando, FL 32816, USA
| | - Ellen Hyeran Kang
- NanoScience Technology Center, University of Central Florida, Orlando, FL 32826, USA; (J.P.); (P.K.); (A.K.); (T.R.)
- Department of Materials Science and Engineering, University of Central Florida, Orlando, FL 32816, USA
- Department of Physics, University of Central Florida, Orlando, FL 32816, USA
| |
Collapse
|
7
|
Castaneda N, Park J, Kang EH. Regulation of Actin Bundle Mechanics and Structure by Intracellular Environmental Factors. FRONTIERS IN PHYSICS 2021; 9:675885. [PMID: 34422787 PMCID: PMC8376200 DOI: 10.3389/fphy.2021.675885] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The mechanical and structural properties of actin cytoskeleton drive various cellular processes, including structural support of the plasma membrane and cellular motility. Actin monomers assemble into double-stranded helical filaments as well as higher-ordered structures such as bundles and networks. Cells incorporate macromolecular crowding, cation interactions, and actin-crosslinking proteins to regulate the organization of actin bundles. Although the roles of each of these factors in actin bundling have been well-known individually, how combined factors contribute to actin bundle assembly, organization, and mechanics is not fully understood. Here, we describe recent studies that have investigated the mechanisms of how intracellular environmental factors influence actin bundling. This review highlights the effects of macromolecular crowding, cation interactions, and actin-crosslinking proteins on actin bundle organization, structure, and mechanics. Understanding these mechanisms is important in determining in vivo actin biophysics and providing insights into cell physiology.
Collapse
Affiliation(s)
- Nicholas Castaneda
- NanoScience Technology Center, University of Central Florida, Orlando, FL, United States
- Burnett School of Biomedical Sciences, College of Medicine, University of Central Florida, Orlando, FL, United States
| | - Jinho Park
- NanoScience Technology Center, University of Central Florida, Orlando, FL, United States
- Department of Materials Science and Engineering, University of Central Florida, Orlando, FL, United States
| | - Ellen Hyeran Kang
- NanoScience Technology Center, University of Central Florida, Orlando, FL, United States
- Department of Materials Science and Engineering, University of Central Florida, Orlando, FL, United States
- Department of Physics, University of Central Florida, Orlando, FL, United States
| |
Collapse
|
8
|
Wang Y, Guo Z, Tan T, Ji Y, Hu J, Zhang Y. The effects of nanobubbles on the assembly of glucagon amyloid fibrils. SOFT MATTER 2021; 17:3486-3493. [PMID: 33657201 DOI: 10.1039/d0sm02279a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Some recent studies have shown that the surface and interface play an important role in the assembly and aggregation of amyloid proteins. However, it is unclear how the gas-liquid interface affects the protein assembly at the nanometer scale although the presence of gas-liquid interfaces is very common in in vitro experiments. Nanobubbles have a large specific surface area, which provides a stage for interactions with various proteins and peptides on the nanometer scale. In this work, nanobubbles produced in solution were employed for studying the effects of the gas-liquid interface on the assembly of glucagon proteins. Atomic force microscopy (AFM) studies showed that nanobubble-treated glucagon solution formed fibrils with an apparent height of 4.02 ± 0.71 nm, in contrast to the fibrils formed with a height of 2.14 ± 0.53 nm in the control. Transmission electron microscopy (TEM) results also showed that nanobubbles promoted the assembly of glucagon to form more fibrils. Thioflavin T (ThT) fluorescence and Fourier transform infrared (FTIR) analyses indicated that the nanobubbles induced the change of the glucagon conformation to a β-sheet structure. A mechanism that explains how nanobubbles affect the assembly of glucagon amyloid fibrils was proposed based on the above-mentioned experimental results. Given the fact that there are a considerable amount of nanobubbles existing in protein solutions, our results indicate that nanobubbles should be considered for fully understanding the protein aggregation events in vitro.
Collapse
Affiliation(s)
- Yujiao Wang
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | | | | | | | | | | |
Collapse
|
9
|
Park J, Lee M, Lee B, Castaneda N, Tetard L, Kang EH. Crowding tunes the organization and mechanics of actin bundles formed by crosslinking proteins. FEBS Lett 2020; 595:26-40. [PMID: 33020904 DOI: 10.1002/1873-3468.13949] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 09/14/2020] [Accepted: 09/21/2020] [Indexed: 01/05/2023]
Abstract
Fascin and α-actinin form higher-ordered actin bundles that mediate numerous cellular processes including cell morphogenesis and movement. While it is understood crosslinked bundle formation occurs in crowded cytoplasm, how crowding affects the bundling activities of the two crosslinking proteins is not known. Here, we demonstrate how solution crowding modulates the organization and mechanical properties of fascin- and α-actinin-induced bundles, utilizing total internal reflection fluorescence and atomic force microscopy imaging. Molecular dynamics simulations support the inference that crowding reduces binding interaction between actin filaments and fascin or the calponin homology 1 domain of α-actinin evidenced by interaction energy and hydrogen bonding analysis. Based on our findings, we suggest a mechanism of crosslinked actin bundle assembly and mechanics in crowded intracellular environments.
Collapse
Affiliation(s)
- Jinho Park
- NanoScience Technology Center, University of Central Florida, Orlando, FL, USA.,Department of Materials Science and Engineering, University of Central Florida, Orlando, FL, USA
| | - Myeongsang Lee
- NanoScience Technology Center, University of Central Florida, Orlando, FL, USA
| | - Briana Lee
- NanoScience Technology Center, University of Central Florida, Orlando, FL, USA
| | - Nicholas Castaneda
- NanoScience Technology Center, University of Central Florida, Orlando, FL, USA.,Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, USA
| | - Laurene Tetard
- NanoScience Technology Center, University of Central Florida, Orlando, FL, USA.,Department of Physics, University of Central Florida, Orlando, FL, USA
| | - Ellen Hyeran Kang
- NanoScience Technology Center, University of Central Florida, Orlando, FL, USA.,Department of Materials Science and Engineering, University of Central Florida, Orlando, FL, USA.,Department of Physics, University of Central Florida, Orlando, FL, USA
| |
Collapse
|
10
|
Winter R. Interrogating the Structural Dynamics and Energetics of Biomolecular Systems with Pressure Modulation. Annu Rev Biophys 2019; 48:441-463. [DOI: 10.1146/annurev-biophys-052118-115601] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
High hydrostatic pressure affects the structure, dynamics, and stability of biomolecular systems and is a key parameter in the context of the exploration of the origin and the physical limits of life. This review lays out the conceptual framework for exploring the conformational fluctuations, dynamical properties, and activity of biomolecular systems using pressure perturbation. Complementary pressure-jump relaxation studies are useful tools to study the kinetics and mechanisms of biomolecular phase transitions and structural transformations, such as membrane fusion or protein and nucleic acid folding. Finally, the advantages of using pressure to explore biomolecular assemblies and modulate enzymatic reactions are discussed.
Collapse
Affiliation(s)
- Roland Winter
- Faculty of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, D-44227 Dortmund, Germany
| |
Collapse
|
11
|
Castaneda N, Lee M, Rivera-Jacquez HJ, Marracino RR, Merlino TR, Kang H. Actin Filament Mechanics and Structure in Crowded Environments. J Phys Chem B 2019; 123:2770-2779. [PMID: 30817154 DOI: 10.1021/acs.jpcb.8b12320] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The cellular environment is crowded with high concentrations of macromolecules that significantly reduce accessible volume for biomolecular interactions. Reductions in cellular volume can generate depletion forces that affect protein assembly and stability. The mechanical and structural properties of actin filaments play critical roles in various cellular functions, including structural support, cell movement, division, and intracellular transport. Although the effects of molecular crowding on actin polymerization have been shown, how crowded environments affect filament mechanics and structure is unknown. In this study, we investigate the effects of solution crowding on the modulations of actin filament bending stiffness and conformations both in vitro and in silico. Direct visualization of thermally fluctuating filaments in the presence of crowding agents is achieved by fluorescence microscopy imaging. Biophysical analysis indicates that molecular crowding enhances filament's effective bending stiffness and reduces average filament lengths. Utilizing the all-atom molecular dynamics simulations, we demonstrate that molecular crowding alters filament conformations and intersubunit contacts that are directly coupled to the mechanical properties of filaments. Taken together, our study suggests that the interplay between excluded volume effects and nonspecific interactions raised from molecular crowding may modulate actin filament mechanics and structure.
Collapse
Affiliation(s)
- Nicholas Castaneda
- NanoScience Technology Center , University of Central Florida , Orlando , Florida 32826 , United States.,Burnett School of Biomedical Sciences, College of Medicine , University of Central Florida , Orlando , Florida 32827 , United States
| | - Myeongsang Lee
- NanoScience Technology Center , University of Central Florida , Orlando , Florida 32826 , United States
| | - Hector J Rivera-Jacquez
- NanoScience Technology Center , University of Central Florida , Orlando , Florida 32826 , United States
| | - Ryan R Marracino
- NanoScience Technology Center , University of Central Florida , Orlando , Florida 32826 , United States.,Burnett School of Biomedical Sciences, College of Medicine , University of Central Florida , Orlando , Florida 32827 , United States
| | - Theresa R Merlino
- NanoScience Technology Center , University of Central Florida , Orlando , Florida 32826 , United States
| | - Hyeran Kang
- NanoScience Technology Center , University of Central Florida , Orlando , Florida 32826 , United States
| |
Collapse
|
12
|
Gao M, Berghaus M, Möbitz S, Schuabb V, Erwin N, Herzog M, Julius K, Sternemann C, Winter R. On the Origin of Microtubules' High-Pressure Sensitivity. Biophys J 2019. [PMID: 29539395 DOI: 10.1016/j.bpj.2018.01.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
For over 50 years, it has been known that the mitosis of eukaryotic cells is inhibited already at high hydrostatic pressure conditions of 30 MPa. This effect has been attributed to the disorganization of microtubules, the main component of the spindle apparatus. However, the structural details of the depolymerization and the origin of the pressure sensitivity have remained elusive. It has also been a puzzle how complex organisms could still successfully inhabit extreme high-pressure environments such as those encountered in the depth of oceans. We studied the pressure stability of microtubules at different structural levels and for distinct dynamic states using high-pressure Fourier-transform infrared spectroscopy and Synchrotron small-angle x-ray scattering. We show that microtubules are hardly stable under abyssal conditions, where pressures up to 100 MPa are reached. This high-pressure sensitivity can be mainly attributed to the internal voids and packing defects in the microtubules. In particular, we show that lateral and longitudinal contacts feature different pressure stabilities, and they define also the pressure stability of tubulin bundles. The intactness of both contact types is necessary for the functionality of microtubules in vivo. Despite being known to dynamically stabilize microtubules and prevent their depolymerization, we found that the anti-cancer drug taxol and the accessory protein MAP2c decrease the pressure stability of microtubule protofilaments. Moreover, we demonstrate that the cellular environment itself is a crowded place and accessory proteins can increase the pressure stability of microtubules and accelerate their otherwise highly pressure-sensitive de novo formation.
Collapse
Affiliation(s)
- Mimi Gao
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology
| | - Melanie Berghaus
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology
| | - Simone Möbitz
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology
| | - Vitor Schuabb
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology
| | - Nelli Erwin
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology
| | - Marius Herzog
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology
| | - Karin Julius
- Fakultät Physik/DELTA, Technische Universität Dortmund, Dortmund, Germany
| | | | - Roland Winter
- Physical Chemistry I - Biophysical Chemistry, Faculty of Chemistry and Chemical Biology.
| |
Collapse
|
13
|
Sharma N, Baek K, Shimokawa N, Takagi M. Effect of temperature on raft-dependent endocytic cluster formation during activation of Jurkat T cells by concanavalin A. J Biosci Bioeng 2018; 127:479-485. [PMID: 30355461 DOI: 10.1016/j.jbiosc.2018.09.014] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 09/18/2018] [Accepted: 09/21/2018] [Indexed: 01/28/2023]
Abstract
Temperature plays an important role in the immune response. Acclimatization occurs when there are changes in ambient temperature over a long period. In this study, we used the human leukemic Jurkat T cell line to study the effect of temperature on the immune system using concanavalin A (ConA), a plant-derived immunostimulant, as a trigger for T-cell activation. Previously, we have reported endocytic intracellular cluster formation during T-cell activation by ConA with the aid of rafts and polymerization of the cytoskeleton (actin and microtubules). Here, we investigated the effect of temperature on cluster formation (with the aid of three-dimensional images of the cells) and on the stability of rafts, actin, and microtubules. When the temperature was changed between 23°C and 37°C (physiological temperature), clusters could be observed throughout this temperature range. Raft structure was stabilized at lower temperatures but destabilized at higher temperatures. Actin was stable when the temperature was higher than 27°C. When actin was depolymerized, clustering was not observed at 37°C but could be observed at 23°C. There were no changes in microtubules within this temperature range. Thus, raft clustering may be associated with raft stability at lower temperatures (<27°C) and with actin at higher temperatures (≥27°C). Hence, we provided insight into the associations between temperature, rafts, actin, and microtubules in the immune response.
Collapse
Affiliation(s)
- Neha Sharma
- School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - KeangOK Baek
- School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Naofumi Shimokawa
- School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan
| | - Masahiro Takagi
- School of Materials Science, Japan Advanced Institute of Science and Technology (JAIST), 1-1 Asahidai, Nomi, Ishikawa 923-1292, Japan.
| |
Collapse
|
14
|
Jaworek MW, Schuabb V, Winter R. The effects of glycine, TMAO and osmolyte mixtures on the pressure dependent enzymatic activity of α-chymotrypsin. Phys Chem Chem Phys 2018; 20:1347-1354. [DOI: 10.1039/c7cp06042d] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Different natural osmolytes modulate the pressure dependent enzyme kinetics in different ways.
Collapse
Affiliation(s)
- Michel W. Jaworek
- Physical Chemistry I – Biophysical Chemistry
- Faculty of Chemistry and Chemical Biology
- Technical University Dortmund
- 44227 Dortmund
- Germany
| | - Vitor Schuabb
- Physical Chemistry I – Biophysical Chemistry
- Faculty of Chemistry and Chemical Biology
- Technical University Dortmund
- 44227 Dortmund
- Germany
| | - Roland Winter
- Physical Chemistry I – Biophysical Chemistry
- Faculty of Chemistry and Chemical Biology
- Technical University Dortmund
- 44227 Dortmund
- Germany
| |
Collapse
|
15
|
Wangler A, Canales R, Held C, Luong TQ, Winter R, Zaitsau DH, Verevkin SP, Sadowski G. Co-solvent effects on reaction rate and reaction equilibrium of an enzymatic peptide hydrolysis. Phys Chem Chem Phys 2018; 20:11317-11326. [DOI: 10.1039/c7cp07346a] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This work presents an approach that expresses the Michaelis constant KaM and the equilibrium constant Kth of an enzymatic peptide hydrolysis based on thermodynamic activities instead of concentrations.
Collapse
Affiliation(s)
- A. Wangler
- Department BCI, Laboratory of Thermodynamics
- TU Dortmund University
- 44227 Dortmund
- Germany
| | - R. Canales
- Department BCI, Laboratory of Thermodynamics
- TU Dortmund University
- 44227 Dortmund
- Germany
- Departamento de Ingeniería Química y Bioprocesos
| | - C. Held
- Department BCI, Laboratory of Thermodynamics
- TU Dortmund University
- 44227 Dortmund
- Germany
| | - T. Q. Luong
- Department of Chemistry and Chemical Biology
- TU Dortmund University
- 44227 Dortmund
- Germany
| | - R. Winter
- Department of Chemistry and Chemical Biology
- TU Dortmund University
- 44227 Dortmund
- Germany
| | - D. H. Zaitsau
- Department of Physical Chemistry
- Institute of Chemistry
- University of Rostock
- 18059 Rostock
- Germany
| | - S. P. Verevkin
- Department of Physical Chemistry
- Institute of Chemistry
- University of Rostock
- 18059 Rostock
- Germany
| | - G. Sadowski
- Department BCI, Laboratory of Thermodynamics
- TU Dortmund University
- 44227 Dortmund
- Germany
| |
Collapse
|
16
|
Gao M, Held C, Patra S, Arns L, Sadowski G, Winter R. Crowders and Cosolvents-Major Contributors to the Cellular Milieu and Efficient Means to Counteract Environmental Stresses. Chemphyschem 2017; 18:2951-2972. [DOI: 10.1002/cphc.201700762] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2017] [Revised: 08/15/2017] [Indexed: 01/27/2023]
Affiliation(s)
- Mimi Gao
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| | - Christoph Held
- TU Dortmund University; Department of Biochemical and Chemical Engineering; Emil-Figge-Str. 70 44227 Dortmund Germany
| | - Satyajit Patra
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| | - Loana Arns
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| | - Gabriele Sadowski
- TU Dortmund University; Department of Biochemical and Chemical Engineering; Emil-Figge-Str. 70 44227 Dortmund Germany
| | - Roland Winter
- TU Dortmund University; Faculty of Chemistry and Chemical Biology; Physical Chemistry I-Biophysical Chemistry; Otto Hahn Str. 4a 44227 Dortmund Germany
| |
Collapse
|
17
|
Ganguly A, Luong TQ, Brylski O, Dirkmann M, Möller D, Ebbinghaus S, Schulz F, Winter R, Sanchez-Garcia E, Thiel W. Elucidation of the Catalytic Mechanism of a Miniature Zinc Finger Hydrolase. J Phys Chem B 2017. [DOI: 10.1021/acs.jpcb.7b05027] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Abir Ganguly
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
| | - Trung Quan Luong
- Fakultät
für Chemie und Chemische Biologie, Physikalische Chemie I, Technische Universität Dortmund, 44227 Dortmund, Germany
| | - Oliver Brylski
- Fakultät
für Chemie und Biochemie, Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Michael Dirkmann
- Fakultät
für Chemie und Biochemie, Organische Chemie I, Ruhr-Universität Bochum, 44780 Bochum, Germany
| | - David Möller
- Fakultät
für Chemie und Biochemie, Organische Chemie I, Ruhr-Universität Bochum, 44780 Bochum, Germany
| | - Simon Ebbinghaus
- Fakultät
für Chemie und Biochemie, Physikalische Chemie II, Ruhr-Universität Bochum, 44780, Bochum, Germany
| | - Frank Schulz
- Fakultät
für Chemie und Biochemie, Organische Chemie I, Ruhr-Universität Bochum, 44780 Bochum, Germany
| | - Roland Winter
- Fakultät
für Chemie und Chemische Biologie, Physikalische Chemie I, Technische Universität Dortmund, 44227 Dortmund, Germany
| | | | - Walter Thiel
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim an der Ruhr, Germany
| |
Collapse
|
18
|
Heyden M, Ebbinghaus S, Winter R. Das Innere der Zelle: Ein komplexes Lösungsmittel. CHEM UNSERER ZEIT 2017. [DOI: 10.1002/ciuz.201700777] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
19
|
Smolin N, Voloshin VP, Anikeenko AV, Geiger A, Winter R, Medvedev NN. TMAO and urea in the hydration shell of the protein SNase. Phys Chem Chem Phys 2017; 19:6345-6357. [DOI: 10.1039/c6cp07903b] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We performed all-atom MD simulations of the protein SNase in aqueous solution and in the presence of two major osmolytes, trimethylamine-N-oxide (TMAO) and urea, as cosolvents at various concentrations and compositions and at different pressures and temperatures.
Collapse
Affiliation(s)
- Nikolai Smolin
- Department of Cell and Molecular Physiology
- Loyola University Chicago
- Maywood
- USA
| | | | - Alexey V. Anikeenko
- Institute of Chemical Kinetics and Combustion
- 630090 Novosibirsk
- Russia
- Novosibirsk State University
- 630090 Novosibirsk
| | - Alfons Geiger
- Physikalische Chemie
- Fakultät für Chemie und Chemische Biologie
- Technische Universität Dortmund
- 44221 Dortmund
- Germany
| | - Roland Winter
- Physikalische Chemie
- Fakultät für Chemie und Chemische Biologie
- Technische Universität Dortmund
- 44221 Dortmund
- Germany
| | - Nikolai N. Medvedev
- Institute of Chemical Kinetics and Combustion
- 630090 Novosibirsk
- Russia
- Novosibirsk State University
- 630090 Novosibirsk
| |
Collapse
|
20
|
Schummel PH, Gao M, Winter R. Modulation of the Polymerization Kinetics of α/β-Tubulin by Osmolytes and Macromolecular Crowding. Chemphyschem 2016; 18:189-197. [DOI: 10.1002/cphc.201601032] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Indexed: 12/30/2022]
Affiliation(s)
- Paul Hendrik Schummel
- Faculty of Chemistry and Chemical Biology, Physical Chemistry-Biophysical Chemistry; TU Dortmund University; Otto-Hahn-Str. 4a 44227 Dortmund Germany
| | - Mimi Gao
- Faculty of Chemistry and Chemical Biology, Physical Chemistry-Biophysical Chemistry; TU Dortmund University; Otto-Hahn-Str. 4a 44227 Dortmund Germany
| | - Roland Winter
- Faculty of Chemistry and Chemical Biology, Physical Chemistry-Biophysical Chemistry; TU Dortmund University; Otto-Hahn-Str. 4a 44227 Dortmund Germany
| |
Collapse
|
21
|
Luong TQ, Erwin N, Neumann M, Schmidt A, Loos C, Schmidt V, Fändrich M, Winter R. Hydrostatic Pressure Increases the Catalytic Activity of Amyloid Fibril Enzymes. Angew Chem Int Ed Engl 2016; 55:12412-6. [PMID: 27573584 DOI: 10.1002/anie.201605715] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Revised: 07/11/2016] [Indexed: 12/13/2022]
Abstract
We studied the combined effects of pressure (0.1-200 MPa) and temperature (22, 30, and 38 °C) on the catalytic activity of designed amyloid fibrils using a high-pressure stopped-flow system with rapid UV/Vis absorption detection. Complementary FT-IR spectroscopic data revealed a remarkably high pressure and temperature stability of the fibrillar systems. High pressure enhances the esterase activity as a consequence of a negative activation volume at all temperatures (about -14 cm(3) mol(-1) ). The enhancement is sustained in the whole temperature range covered, which allows a further acceleration of the enzymatic activity at high temperatures (activation energy 45-60 kJ mol(-1) ). Our data reveal the great potential of using both pressure and temperature modulation to optimize the enzyme efficiency of catalytic amyloid fibrils.
Collapse
Affiliation(s)
- Trung Quan Luong
- Fakultät für Chemie und Chemische Biologie, TU Dortmund, Otto-Hahn-Strasse 4a, 44227, Dortmund, Germany
| | - Nelli Erwin
- Fakultät für Chemie und Chemische Biologie, TU Dortmund, Otto-Hahn-Strasse 4a, 44227, Dortmund, Germany
| | | | - Andreas Schmidt
- Institut für Pharmazeutische Biotechnologie, Universität Ulm, Helmholtzstrasse 8/1, 89081, Ulm, Germany
| | - Cornelia Loos
- Institut für Pharmazeutische Biotechnologie, Universität Ulm, Helmholtzstrasse 8/1, 89081, Ulm, Germany
| | | | - Marcus Fändrich
- Institut für Pharmazeutische Biotechnologie, Universität Ulm, Helmholtzstrasse 8/1, 89081, Ulm, Germany.
| | - Roland Winter
- Fakultät für Chemie und Chemische Biologie, TU Dortmund, Otto-Hahn-Strasse 4a, 44227, Dortmund, Germany.
| |
Collapse
|
22
|
Luong TQ, Erwin N, Neumann M, Schmidt A, Loos C, Schmidt V, Fändrich M, Winter R. Hydrostatic Pressure Increases the Catalytic Activity of Amyloid Fibril Enzymes. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605715] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Trung Quan Luong
- Fakultät für Chemie und Chemische Biologie; TU Dortmund; Otto-Hahn-Strasse 4a 44227 Dortmund Germany
| | - Nelli Erwin
- Fakultät für Chemie und Chemische Biologie; TU Dortmund; Otto-Hahn-Strasse 4a 44227 Dortmund Germany
| | | | - Andreas Schmidt
- Institut für Pharmazeutische Biotechnologie; Universität Ulm; Helmholtzstrasse 8/1 89081 Ulm Germany
| | - Cornelia Loos
- Institut für Pharmazeutische Biotechnologie; Universität Ulm; Helmholtzstrasse 8/1 89081 Ulm Germany
| | | | - Marcus Fändrich
- Institut für Pharmazeutische Biotechnologie; Universität Ulm; Helmholtzstrasse 8/1 89081 Ulm Germany
| | - Roland Winter
- Fakultät für Chemie und Chemische Biologie; TU Dortmund; Otto-Hahn-Strasse 4a 44227 Dortmund Germany
| |
Collapse
|
23
|
Imoto S, Kibies P, Rosin C, Winter R, Kast SM, Marx D. Toward Extreme Biophysics: Deciphering the Infrared Response of Biomolecular Solutions at High Pressures. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201602757] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Sho Imoto
- Lehrstuhl für Theoretische Chemie; Ruhr-Universität Bochum; 44780 Bochum Germany
| | - Patrick Kibies
- Physikalische Chemie III; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Christopher Rosin
- Physikalische Chemie I; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Roland Winter
- Physikalische Chemie I; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Stefan M. Kast
- Physikalische Chemie III; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie; Ruhr-Universität Bochum; 44780 Bochum Germany
| |
Collapse
|
24
|
Imoto S, Kibies P, Rosin C, Winter R, Kast SM, Marx D. Toward Extreme Biophysics: Deciphering the Infrared Response of Biomolecular Solutions at High Pressures. Angew Chem Int Ed Engl 2016; 55:9534-8. [DOI: 10.1002/anie.201602757] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Revised: 05/18/2016] [Indexed: 11/10/2022]
Affiliation(s)
- Sho Imoto
- Lehrstuhl für Theoretische Chemie; Ruhr-Universität Bochum; 44780 Bochum Germany
| | - Patrick Kibies
- Physikalische Chemie III; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Christopher Rosin
- Physikalische Chemie I; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Roland Winter
- Physikalische Chemie I; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Stefan M. Kast
- Physikalische Chemie III; Technische Universität Dortmund; 44227 Dortmund Germany
| | - Dominik Marx
- Lehrstuhl für Theoretische Chemie; Ruhr-Universität Bochum; 44780 Bochum Germany
| |
Collapse
|
25
|
Gao M, Winter R. Kinetic Insights into the Elongation Reaction of Actin Filaments as a Function of Temperature, Pressure, and Macromolecular Crowding. Chemphyschem 2015; 16:3681-6. [PMID: 26420566 DOI: 10.1002/cphc.201500633] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2015] [Indexed: 11/08/2022]
Abstract
Actin polymerization is an essential process in eukaryotic cells that provides a driving force for motility and mechanical resistance for cell shape. By using preformed gelsolin-actin nuclei and applying stopped-flow methodology, we quantitatively studied the elongation kinetics of actin filaments as a function of temperature and pressure in the presence of synthetic and protein crowding agents. We show that the association of actin monomers to the pointed end of double-stranded helical actin filaments (F-actin) proceeds via a transition state that requires an activation energy of 56 kJ mol(-1) for conformational and hydration rearrangements, but exhibits a negligible activation volume, pointing to a compact transition state that is devoid of packing defects. Macromolecular crowding causes acceleration of the F-actin elongation rate and counteracts the deteriorating effect of pressure. The results shed new light on the combined effect of these parameters on the polymerization process of actin, and help us understand the temperature and pressure sensitivity of actin polymerization under extreme conditions.
Collapse
Affiliation(s)
- Mimi Gao
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, Otto-Hahn-Str. 6, 44227, Dortmund, Germany
| | - Roland Winter
- Department of Chemistry and Chemical Biology, Biophysical Chemistry, TU Dortmund University, Otto-Hahn-Str. 6, 44227, Dortmund, Germany.
| |
Collapse
|
26
|
Luong TQ, Kapoor S, Winter R. Pressure-A Gateway to Fundamental Insights into Protein Solvation, Dynamics, and Function. Chemphyschem 2015; 16:3555-71. [DOI: 10.1002/cphc.201500669] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2015] [Indexed: 01/11/2023]
Affiliation(s)
- Trung Quan Luong
- Department of Chemistry and Chemical Biology, Physical Chemistry; TU Dortmund University, Dortmund; Otto-Hahn-Str. 6 d-44221 Dortmund Germany
| | - Shobhna Kapoor
- Department of Chemistry and Chemical Biology, Physical Chemistry; TU Dortmund University, Dortmund; Otto-Hahn-Str. 6 d-44221 Dortmund Germany
| | - Roland Winter
- Department of Chemistry and Chemical Biology, Physical Chemistry; TU Dortmund University, Dortmund; Otto-Hahn-Str. 6 d-44221 Dortmund Germany
| |
Collapse
|
27
|
Luong TQ, Winter R. Combined pressure and cosolvent effects on enzyme activity – a high-pressure stopped-flow kinetic study on α-chymotrypsin. Phys Chem Chem Phys 2015; 17:23273-8. [DOI: 10.1039/c5cp03529e] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Pressure enhances the hydrolysis of peptides catalysed by α-CT, which is efficiently and differently modulated by chaotropic and kosmotropic cosolvents.
Collapse
Affiliation(s)
- Trung Quan Luong
- Department of Chemistry and Chemical Biology
- TU Dortmund University
- D-44221 Dortmund
- Germany
| | - Roland Winter
- Department of Chemistry and Chemical Biology
- TU Dortmund University
- D-44221 Dortmund
- Germany
| |
Collapse
|