1
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Urrego-Ortiz R, Builes S, Illas F, Bromley ST, Figueiredo MC, Calle-Vallejo F. Minimum conditions for accurate modeling of urea production via co-electrolysis. Commun Chem 2023; 6:196. [PMID: 37704802 PMCID: PMC10499819 DOI: 10.1038/s42004-023-00990-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 08/22/2023] [Indexed: 09/15/2023] Open
Abstract
Co-electrolysis of carbon oxides and nitrogen oxides promise to simultaneously help restore the balance of the C and N cycles while producing valuable chemicals such as urea. However, co-electrolysis processes are still largely inefficient and numerous knowledge voids persist. Here, we provide a solid thermodynamic basis for modelling urea production via co-electrolysis. First, we determine the energetics of aqueous urea produced under electrochemical conditions based on experimental data, which enables an accurate assessment of equilibrium potentials and overpotentials. Next, we use density functional theory (DFT) calculations to model various co-electrolysis reactions producing urea. The calculated reaction free energies deviate significantly from experimental values for well-known GGA, meta-GGA and hybrid functionals. These deviations stem from errors in the DFT-calculated energies of molecular reactants and products. In particular, the error for urea is approximately -0.25 ± 0.10 eV. Finally, we show that all these errors introduce large inconsistencies in the calculated free-energy diagrams of urea production via co-electrolysis, such that gas-phase corrections are strongly advised.
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Affiliation(s)
- Ricardo Urrego-Ortiz
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/ Martí i Franquès 1, 08028, Barcelona, Spain
- Nano-Bio Spectroscopy Group and European Theoretical Spectroscopy Facility (ETSF), Department of Polymers and Advanced Materials: Physics, Chemistry and Technology, University of the Basque Country UPV/EHU, Av. Tolosa 72, 20018, San Sebastián, Spain
| | - Santiago Builes
- Escuela de Ciencias Aplicadas e Ingeniería, Universidad EAFIT, Carrera 49 # 7 sur 50, 050022, Medellín, Colombia
| | - Francesc Illas
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/ Martí i Franquès 1, 08028, Barcelona, Spain
| | - Stefan T Bromley
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, C/ Martí i Franquès 1, 08028, Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys 23, 08010, Barcelona, Spain
| | - Marta Costa Figueiredo
- Eindhoven Institute of Renewable Energy Systems (EIRES), Eindhoven University of Technology, PO Box 513, Eindhoven, 5600 MB, The Netherlands
| | - Federico Calle-Vallejo
- Nano-Bio Spectroscopy Group and European Theoretical Spectroscopy Facility (ETSF), Department of Polymers and Advanced Materials: Physics, Chemistry and Technology, University of the Basque Country UPV/EHU, Av. Tolosa 72, 20018, San Sebastián, Spain.
- IKERBASQUE, Basque Foundation for Science, Plaza de Euskadi 5, 48009, Bilbao, Spain.
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2
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Calle-Vallejo F. The ABC of Generalized Coordination Numbers and Their Use as a Descriptor in Electrocatalysis. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023:e2207644. [PMID: 37102632 PMCID: PMC10369287 DOI: 10.1002/advs.202207644] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2022] [Revised: 03/08/2023] [Indexed: 06/19/2023]
Abstract
The quest for enhanced electrocatalysts can be boosted by descriptor-based analyses. Because adsorption energies are the most common descriptors, electrocatalyst design is largely based on brute-force routines that comb materials databases until an energetic criterion is verified. In this review, it is shown that an alternative is provided by generalized coordination numbers (denoted by CN ¯ $\overline {{\rm{CN}}} $ or GCN), an inexpensive geometric descriptor for strained and unstrained transition metals and some alloys. CN ¯ $\overline {{\rm{CN}}} $ captures trends in adsorption energies on both extended surfaces and nanoparticles and is used to elaborate structure-sensitive electrocatalytic activity plots and selectivity maps. Importantly, CN ¯ $\overline {{\rm{CN}}} $ outlines the geometric configuration of the active sites, thereby enabling an atom-by-atom design, which is not possible using energetic descriptors. Specific examples for various adsorbates (e.g., *OH, *OOH, *CO, and *H), metals (e.g., Pt and Cu), and electrocatalytic reactions (e.g., O2 reduction, H2 evolution, CO oxidation, and reduction) are presented, and comparisons are made against other descriptors.
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Affiliation(s)
- Federico Calle-Vallejo
- Nano-Bio Spectroscopy Group and European Theoretical Spectroscopy Facility (ETSF), Department of Advanced Materials and Polymers: Physics, Chemistry and Technology, University of the Basque Country UPV/EHU, 20018, Av. Tolosa 72, San Sebastián, Spain
- IKERBASQUE, Basque Foundation for Science, Plaza de Euskadi 5, Bilbao, 48009, Spain
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3
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Hanselman S, Koper MTM, Calle-Vallejo F. Using micro-solvation and generalized coordination numbers to estimate the solvation energies of adsorbed hydroxyl on metal nanoparticles. Phys Chem Chem Phys 2023; 25:3211-3219. [PMID: 36625180 DOI: 10.1039/d2cp04785c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Solvent-adsorbate interactions have a great impact on catalytic processes in aqueous systems. Implicit solvent calculations are inexpensive but inaccurate toward hydrogen bonds, while a full incorporation of explicit solvation is computationally demanding. Micro-solvation attempts to break this dilemma by including only those solvent molecules directly interacting with the solute and any nearby interfaces, thereby providing a compromise between accuracy and computational expenses. Here, we show that micro-solvation of *OH and its relation to adsorption sites is largely transferable across late transition metal nanoparticles. Solvation energies for *OH on nanoparticles of Ir, Pd, and Pt range from -0.63 ± 0.04 eV to -0.67 ± 0.12 eV, while those on Au and Ag are -0.75 ± 0.07 eV and -1.01 ± 0.05 eV, respectively. These results enable the use of average solvation corrections for *OH on late transition metal nanostructures.
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Affiliation(s)
- Selwyn Hanselman
- Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands.
| | - Marc T M Koper
- Leiden Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands.
| | - Federico Calle-Vallejo
- Nano-Bio Spectroscopy Group and European Theoretical Spectroscopy Facility (ETSF), Department of Polymers and Advanced Materials: Physics, Chemistry and Technology, University of the Basque Country UPV/EHU, Av. Tolosa 72, 20018 San Sebastián, Spain.,IKERBASQUE, Basque Foundation for Science, Plaza de Euskadi 5, 48009 Bilbao, Spain.,Department of Materials Science and Chemical Physics & Institute of Theoretical and Computational Chemistry (IQTC), University de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
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4
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Trends in oxygenate/hydrocarbon selectivity for electrochemical CO (2) reduction to C 2 products. Nat Commun 2022; 13:1399. [PMID: 35302055 PMCID: PMC8931056 DOI: 10.1038/s41467-022-29140-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 02/17/2022] [Indexed: 11/08/2022] Open
Abstract
The electrochemical conversion of carbon di-/monoxide into commodity chemicals paves a way towards a sustainable society but it also presents one of the great challenges in catalysis. Herein, we present the trends in selectivity towards specific dicarbon oxygenate/hydrocarbon products from carbon monoxide reduction on transition metal catalysts, with special focus on copper. We unveil the distinctive role of electrolyte pH in tuning the dicarbon oxygenate/hydrocarbon selectivity. The understanding is based on density functional theory calculated energetics and microkinetic modeling. We identify the critical reaction steps determining selectivity and relate their transition state energies to two simple descriptors, the carbon and hydroxide binding strengths. The atomistic insight gained enables us to rationalize a number of experimental observations and provides avenues towards the design of selective electrocatalysts for liquid fuel production from carbon di-/monoxide.
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5
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Shao F, Zheng L, Lan J, Zenobi R. Nanoscale Chemical Imaging of Coadsorbed Thiolate Self-Assembled Monolayers on Au(111) by Tip-Enhanced Raman Spectroscopy. Anal Chem 2022; 94:1645-1653. [DOI: 10.1021/acs.analchem.1c03968] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Feng Shao
- Department of Physics and Astronomy, National Graphene Institute, University of Manchester, Manchester M13 9PL, U.K
- Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
| | - Liqing Zheng
- Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
| | - Jinggang Lan
- Department of Chemistry, University of Zurich, 8057 Zurich, Switzerland
| | - Renato Zenobi
- Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
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6
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Vázquez-Lizardi GA, Ruiz-Casanova LA, Cruz-Sánchez RM, Santana JA. Simulation of Metal-Supported Metal-Nanoislands: A Comparison of DFT Methods. SURFACE SCIENCE 2021; 712:121889. [PMID: 34176977 PMCID: PMC8224827 DOI: 10.1016/j.susc.2021.121889] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
We have evaluated various density functional theory (DFT) methods to simulate geometric, energetic, electronic, and hydrogen adsorption properties of metal-nanoparticles supported on metal surfaces. We used Pt and Pd nanoislands on Au(111) as model systems. The evaluated DFT methods include GGA (PW91, PBE, RPBE, revPBE, and PBESol), GGA with van der Waals (vdW) corrected (PBE-D3), GGA with optimized vdW functionals (revPBE-vdW), meta-GGA (SCAN and MS2), and the machine learning-based method BEEF-vdW. The results show that the various DFT methods yield similar geometric and electronic properties for Pt (or Pd) nanoislands on Au(111). The DFT methods also produce similar relative energetics for small Pt (or Pd) clusters with different conformations on Au(111). The results show that a triatomic cluster of Pt on Au(111) is more stable with a linear conformation. In contrast, a triatomic cluster of Pd is more stable with a triangular conformation. For clusters with four or more atoms, Pt and Pd clusters on Au(111) prefer non-linear conformation. We found that the various DFT methods yield different results only for the adsorption energy of hydrogen.
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Affiliation(s)
| | | | | | - Juan A. Santana
- Department of Chemistry, University of Puerto Rico at Cayey, Cayey, Puerto Rico, 00737
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7
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Sinha V, Sun D, Meijer EJ, Vlugt TJH, Bieberle-Hütter A. A multiscale modelling approach to elucidate the mechanism of the oxygen evolution reaction at the hematite-water interface. Faraday Discuss 2021; 229:89-107. [PMID: 33735341 DOI: 10.1039/c9fd00140a] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoelectrochemical (PEC) splitting of water to make hydrogen is a promising clean-energy technology. The oxygen evolution reaction (OER) largely determines the energy efficiency in PEC water-splitting. Hematite, which is a cheap and sustainable semiconductor material with excellent chemical properties, a favourable band gap (2.1 eV) and composed of earth abundant elements is a suitable model photoanode material for studying OER. To understand the design of energy efficient anodes, it is highly desirable to have mechanistic insight into OER at an atomistic level which can be directly connected to experimentally measured quantities. We present a multiscale computational model of OER which connects the thermodynamics and kinetics of elementary charge transfer reactions in OER to kinetics of OER at laboratory length and time scales. We couple density functional theory (DFT) and DFT based molecular dynamics (DFT-MD) simulations with solvent effects at an atomistic level with kinetic Monte Carlo (kMC) simulations at a coarse-grained level in our multiscale model. The time and applied bias potential dependent surface coverage, which are experimentally not known, and the O2 evolution rate during OER at the hematite-water interface are calculated by the multiscale model. Furthermore, the multiscale model demonstrates the effect of explicitly modelling the interaction of water with the electrode surface via direct adsorption.
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Affiliation(s)
- V Sinha
- Electrochemical Materials and Interfaces, Dutch Institute for Fundamental Energy Research (DIFFER), de Zaale 20, Eindhoven, 5612 AJ, The Netherlands. and Process and Energy Department, Faculty of Mechanical, Maritime and Materials Engineering, Delft University of Technology, Leeghwaterstraat 39, Delft, 2628CB, The Netherlands.
| | - D Sun
- Amsterdam Center for Multiscale Modelling, van' t Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - E J Meijer
- Amsterdam Center for Multiscale Modelling, van' t Hoff Institute for Molecular Sciences, University of Amsterdam, Amsterdam, The Netherlands
| | - T J H Vlugt
- Process and Energy Department, Faculty of Mechanical, Maritime and Materials Engineering, Delft University of Technology, Leeghwaterstraat 39, Delft, 2628CB, The Netherlands.
| | - A Bieberle-Hütter
- Electrochemical Materials and Interfaces, Dutch Institute for Fundamental Energy Research (DIFFER), de Zaale 20, Eindhoven, 5612 AJ, The Netherlands.
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8
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Urrego‐Ortiz R, Builes S, Calle‐Vallejo F. Fast Correction of Errors in the DFT‐Calculated Energies of Gaseous Nitrogen‐Containing Species. ChemCatChem 2021. [DOI: 10.1002/cctc.202100125] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Ricardo Urrego‐Ortiz
- Departamento de Ingeniería de Procesos Universidad EAFIT Carrera 49 No 7 sur – 50 050022 Medellín Colombia
| | - Santiago Builes
- Departamento de Ingeniería de Procesos Universidad EAFIT Carrera 49 No 7 sur – 50 050022 Medellín Colombia
| | - Federico Calle‐Vallejo
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB) Universitat de Barcelona Martí i Franquès 1 08028 Barcelona Spain
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9
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Feng J, Lansford JL, Katsoulakis MA, Vlachos DG. Explainable and trustworthy artificial intelligence for correctable modeling in chemical sciences. SCIENCE ADVANCES 2020; 6:6/42/eabc3204. [PMID: 33055163 PMCID: PMC7556836 DOI: 10.1126/sciadv.abc3204] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Accepted: 08/26/2020] [Indexed: 05/25/2023]
Abstract
Data science has primarily focused on big data, but for many physics, chemistry, and engineering applications, data are often small, correlated and, thus, low dimensional, and sourced from both computations and experiments with various levels of noise. Typical statistics and machine learning methods do not work for these cases. Expert knowledge is essential, but a systematic framework for incorporating it into physics-based models under uncertainty is lacking. Here, we develop a mathematical and computational framework for probabilistic artificial intelligence (AI)-based predictive modeling combining data, expert knowledge, multiscale models, and information theory through uncertainty quantification and probabilistic graphical models (PGMs). We apply PGMs to chemistry specifically and develop predictive guarantees for PGMs generally. Our proposed framework, combining AI and uncertainty quantification, provides explainable results leading to correctable and, eventually, trustworthy models. The proposed framework is demonstrated on a microkinetic model of the oxygen reduction reaction.
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Affiliation(s)
- Jinchao Feng
- Department of Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Joshua L Lansford
- Department of Chemical and Biomolecular Engineering, University of Delaware,150 Academy Street, Colburn Laboratory Newark, DE 19716, USA
| | - Markos A Katsoulakis
- Department of Mathematics and Statistics, University of Massachusetts at Amherst, Amherst, MA 01003, USA.
| | - Dionisios G Vlachos
- Department of Chemical and Biomolecular Engineering, University of Delaware,150 Academy Street, Colburn Laboratory Newark, DE 19716, USA.
- Catalysis Center for Energy Innovation, University of Delaware, 221 Academy Street, 250R, Newark, DE 19716, USA
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10
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Piqué O, Viñes F, Illas F, Calle-Vallejo F. Elucidating the Structure of Ethanol-Producing Active Sites at Oxide-Derived Cu Electrocatalysts. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01880] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Oriol Piqué
- Departament de Ciència de Materials i Quı́mica Fı́sica & Institut de Quı́mica Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Francesc Viñes
- Departament de Ciència de Materials i Quı́mica Fı́sica & Institut de Quı́mica Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Francesc Illas
- Departament de Ciència de Materials i Quı́mica Fı́sica & Institut de Quı́mica Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Federico Calle-Vallejo
- Departament de Ciència de Materials i Quı́mica Fı́sica & Institut de Quı́mica Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Spain
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11
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Chen X, Granda-Marulanda LP, McCrum IT, Koper MTM. Adsorption processes on a Pd monolayer-modified Pt(111) electrode. Chem Sci 2020; 11:1703-1713. [PMID: 34084392 PMCID: PMC8148025 DOI: 10.1039/c9sc05307g] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Specific adsorption of anions is an important aspect in surface electrochemistry for its influence on reaction kinetics in either a promoted or inhibited fashion. Perchloric acid is typically considered as an ideal electrolyte for investigating electrocatalytic reactions due to the lack of specific adsorption of the perchlorate anion on several metal electrodes. In this work, cyclic voltammetry and computational methods are combined to investigate the interfacial processes on a Pd monolayer deposited on Pt(111) single crystal electrode in perchloric acid solution. The “hydrogen region” of this PdMLPt(111) surface exhibits two voltammetric peaks: the first “hydrogen peak” at 0.246 VRHE actually involves the replacement of hydrogen by hydroxyl, and the second “hydrogen peak” HII at 0.306 VRHE appears to be the replacement of adsorbed hydroxyl by specific perchlorate adsorption. The two peaks merge into a single peak when a more strongly adsorbed anion, such as sulfate, is involved. Our density functional theory calculations qualitatively support the peak assignment and show that anions generally bind more strongly to the PdMLPt(111) surface than to Pt(111). Specific adsorption of anions is an important aspect in surface electrochemistry for its influence on reaction kinetics in either a promoted or inhibited fashion.![]()
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Affiliation(s)
- Xiaoting Chen
- Leiden Institute of Chemistry, Leiden University PO Box 9502 Leiden 2300 RA The Netherlands
| | | | - Ian T McCrum
- Leiden Institute of Chemistry, Leiden University PO Box 9502 Leiden 2300 RA The Netherlands
| | - Marc T M Koper
- Leiden Institute of Chemistry, Leiden University PO Box 9502 Leiden 2300 RA The Netherlands
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12
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Granda-Marulanda LP, Builes S, Koper MTM, Calle-Vallejo F. Influence of Van der Waals Interactions on the Solvation Energies of Adsorbates at Pt-Based Electrocatalysts. Chemphyschem 2019; 20:2968-2972. [PMID: 31348598 PMCID: PMC6899950 DOI: 10.1002/cphc.201900512] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 07/26/2019] [Indexed: 12/02/2022]
Abstract
Solvation can significantly modify the adsorption energy of species at surfaces, thereby influencing the performance of electrocatalysts and liquid‐phase catalysts. Thus, it is important to understand adsorbate solvation at the nanoscale. Here we evaluate the effect of van der Waals (vdW) interactions described by different approaches on the solvation energy of *OH adsorbed on near‐surface alloys (NSAs) of Pt. Our results show that the studied functionals can be divided into two groups, each with rather similar average *OH solvation energies: (1) PBE and PW91; and (2) vdW functionals, RPBE, PBE‐D3 and RPBE‐D3. On average, *OH solvation energies are less negative by ∼0.14 eV in group (2) compared to (1), and the values for a given alloy can be extrapolated from one functional to another within the same group. Depending on the desired level of accuracy, these concrete observations and our tabulated values can be used to rapidly incorporate solvation into models for electrocatalysis and liquid‐phase catalysis.
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Affiliation(s)
| | - Santiago Builes
- Departamento de Ingeniería de Procesos, Universidad EAFIT, Carrera 49 No 7 sur - 50, 050022, Medellín, Colombia
| | - Marc T M Koper
- Leiden Institute of Chemistry, Leiden University, PO Box 9502, 2300 RA, Leiden, The Netherlands
| | - Federico Calle-Vallejo
- Departament de Ciència de Materials i Química Física & Institut de Química Teòrica i Computacional (IQTCUB), Universitat de Barcelona, Martí i Franquès 1, 08028, Barcelona, Spain
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13
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Rumptz JR, Campbell CT. Adhesion Energies of Solvent Films to Pt(111) and Ni(111) Surfaces by Adsorption Calorimetry. ACS Catal 2019. [DOI: 10.1021/acscatal.9b03591] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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