1
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Korth B, Pereira J, Sleutels T, Harnisch F, Heijne AT. Comparing theoretical and practical biomass yields calls for revisiting thermodynamic growth models for electroactive microorganisms. WATER RESEARCH 2023; 242:120279. [PMID: 37451189 DOI: 10.1016/j.watres.2023.120279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 06/12/2023] [Accepted: 06/26/2023] [Indexed: 07/18/2023]
Abstract
Research on electroactive microorganisms (EAM) often focuses either on their physiology and the underlying mechanisms of extracellular electron transfer or on their application in microbial electrochemical technologies (MET). Thermodynamic understanding of energy conversions related to growth and activity of EAM has received only a little attention. In this study, we aimed to prove the hypothesized restricted energy harvest of EAM by determining biomass yields by monitoring growth of acetate-fed biofilms presumably enriched in Geobacter, using optical coherence tomography, at three anode potentials and four acetate concentrations. Experiments were concurrently simulated using a refined thermodynamic model for EAM. Neither clear correlations were observed between biomass yield and anode potential nor acetate concentration, albeit the statistical significances are limited, mainly due to the observed experimental variances. The experimental biomass yield based on acetate consumption (YX/ac = 37 ± 9 mgCODbiomass gCODac-1) was higher than estimated by modeling, indicating limitations of existing growth models to predict yields of EAM. In contrast, the modeled biomass yield based on catabolic energy harvest was higher than the biomass yield from experimental data (YX/cat = 25.9 ± 6.8 mgCODbiomass kJ-1), supporting restricted energy harvest of EAM and indicating a role of not considered energy sinks. This calls for an adjusted growth model for EAM, including, e.g., the microbial electrochemical Peltier heat to improve the understanding and modeling of their energy metabolism. Furthermore, the reported biomass yields are important parameters to design strategies for influencing the interactions between EAM and other microorganisms and allowing more realistic feasibility assessments of MET.
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Affiliation(s)
- Benjamin Korth
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research GmbH - UFZ, Permoserstr. 15, Leipzig 04318, Germany.
| | - João Pereira
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9 8911, MA, Leeuwarden, The Netherlands; Environmental Technology, Wageningen University, Bornse Weilanden 9, P.O. Box 17 6700 AA, Wageningen, The Netherlands
| | - Tom Sleutels
- Wetsus, European Centre of Excellence for Sustainable Water Technology, Oostergoweg 9 8911, MA, Leeuwarden, The Netherlands; Faculty of Science and Engineering, University of Groningen, Nijenborgh 4 9747 AG, Groningen, The Netherlands
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research GmbH - UFZ, Permoserstr. 15, Leipzig 04318, Germany
| | - Annemiek Ter Heijne
- Environmental Technology, Wageningen University, Bornse Weilanden 9, P.O. Box 17 6700 AA, Wageningen, The Netherlands
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2
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Sundaresan V, Cutri AR, Metro J, Madukoma CS, Shrout JD, Hoffman AJ, Willets KA, Bohn PW. Potential dependent spectroelectrochemistry of electrofluorogenic dyes on indium‐tin oxide. ELECTROCHEMICAL SCIENCE ADVANCES 2021; 2. [DOI: 10.1002/elsa.202100094] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Affiliation(s)
- Vignesh Sundaresan
- Department of Chemical and Biomolecular Engineering University of Notre Dame Notre Dame Indiana
| | - Allison R. Cutri
- Department of Chemistry and Biochemistry University of Notre Dame Notre Dame Indiana
| | - Jarek Metro
- Department of Chemistry and Biochemistry University of Notre Dame Notre Dame Indiana
| | - Chinedu S. Madukoma
- Department of Civil and Environmental Engineering and Earth Sciences University of Notre Dame Notre Dame Indiana
- Eck Institute for Global Health University of Notre Dame Notre Dame Indiana
| | - Joshua D. Shrout
- Department of Civil and Environmental Engineering and Earth Sciences University of Notre Dame Notre Dame Indiana
- Eck Institute for Global Health University of Notre Dame Notre Dame Indiana
- Department of Biological Sciences University of Notre Dame Notre Dame Indiana
| | - Anthony J. Hoffman
- Department of Electrical Engineering University of Notre Dame Notre Dame Indiana
| | | | - Paul W. Bohn
- Department of Chemical and Biomolecular Engineering University of Notre Dame Notre Dame Indiana
- Department of Chemistry and Biochemistry University of Notre Dame Notre Dame Indiana
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3
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Cabau-Peinado O, Straathof AJJ, Jourdin L. A General Model for Biofilm-Driven Microbial Electrosynthesis of Carboxylates From CO 2. Front Microbiol 2021; 12:669218. [PMID: 34149654 PMCID: PMC8211901 DOI: 10.3389/fmicb.2021.669218] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 05/10/2021] [Indexed: 11/13/2022] Open
Abstract
Up to now, computational modeling of microbial electrosynthesis (MES) has been underexplored, but is necessary to achieve breakthrough understanding of the process-limiting steps. Here, a general framework for modeling microbial kinetics in a MES reactor is presented. A thermodynamic approach is used to link microbial metabolism to the electrochemical reduction of an intracellular mediator, allowing to predict cellular growth and current consumption. The model accounts for CO2 reduction to acetate, and further elongation to n-butyrate and n-caproate. Simulation results were compared with experimental data obtained from different sources and proved the model is able to successfully describe microbial kinetics (growth, chain elongation, and product inhibition) and reactor performance (current density, organics titer). The capacity of the model to simulate different system configurations is also shown. Model results suggest CO2 dissolved concentration might be limiting existing MES systems, and highlight the importance of the delivery method utilized to supply it. Simulation results also indicate that for biofilm-driven reactors, continuous mode significantly enhances microbial growth and might allow denser biofilms to be formed and higher current densities to be achieved.
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Affiliation(s)
- Oriol Cabau-Peinado
- Department of Biotechnology, Faculty of Applied Sciences, Delft University of Technology, Delft, Netherlands
| | - Adrie J J Straathof
- Department of Biotechnology, Faculty of Applied Sciences, Delft University of Technology, Delft, Netherlands
| | - Ludovic Jourdin
- Department of Biotechnology, Faculty of Applied Sciences, Delft University of Technology, Delft, Netherlands
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4
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Ly KH, Weidinger IM. Understanding active sites in molecular (photo)electrocatalysis through complementary vibrational spectroelectrochemistry. Chem Commun (Camb) 2021; 57:2328-2342. [DOI: 10.1039/d0cc07376h] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Highlighting vibrational spectroelectrochemistry for the investigation of synthetic molecular (photo) electrocatalysts for key energy conversion reactions.
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Affiliation(s)
- Khoa H. Ly
- Lehrstuhl für Elektrochemie
- Fakultät für Chemie und Lebensmittelchemie
- Technische Universität Dresden
- Andreas-Schubert-Bau
- Zellescher Weg 19
| | - Inez M. Weidinger
- Lehrstuhl für Elektrochemie
- Fakultät für Chemie und Lebensmittelchemie
- Technische Universität Dresden
- Andreas-Schubert-Bau
- Zellescher Weg 19
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5
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Korth B, Kretzschmar J, Bartz M, Kuchenbuch A, Harnisch F. Determining incremental coulombic efficiency and physiological parameters of early stage Geobacter spp. enrichment biofilms. PLoS One 2020; 15:e0234077. [PMID: 32559199 PMCID: PMC7304624 DOI: 10.1371/journal.pone.0234077] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Accepted: 05/18/2020] [Indexed: 01/06/2023] Open
Abstract
Geobacter spp. enrichment biofilms were cultivated in batch using one-chamber and two-chamber bioelectrochemical reactors. Time-resolved substrate quantification was performed to derive physiological parameters as well as incremental coulombic efficiency (i.e., coulombic efficiency during one batch cycle, here every 6h) during early stage biofilm development. The results of one-chamber reactors revealed an intermediate acetate increase putatively due to the presence of acetogens. Total coulombic efficiencies of two-chamber reactors were considerable lower (19.6±8.3% and 49.3±13.2% for 1st and 2nd batch cycle, respectively) compared to usually reported values of mature Geobacter spp. enrichment biofilms presumably reflecting energetic requirements for biomass production (i.e., cells and extracellular polymeric substances) during early stages of biofilm development. The incremental coulombic efficiency exhibits considerable changes during batch cycles indicating shifts between phases of maximizing metabolic rates and maximizing biomass yield. Analysis based on Michaelis-Menten kinetics yielded maximum substrate uptake rates (vmax,Ac, vmax,I) and half-saturation concentration coefficients (KM,Ac,KM,I) based on acetate uptake or current production, respectively. The latter is usually reported in literature but neglects energy demands for biofilm growth and maintenance as well as acetate and electron storage. From 1st to 2nd batch cycle, vmax,Ac and KM,Ac, decreased from 0.0042-0.0051 mmol Ac- h-1 cm-2 to 0.0031-0.0037 mmol Ac- h-1 cm-2 and 1.02-2.61 mM Ac- to 0.28-0.42 mM Ac-, respectively. Furthermore, differences between KM,Ac/KM,I and vmax,Ac/vmax,I were observed providing insights into the physiology of Geobacter spp. enrichment biofilms. Notably, KM,I considerably scattered while vmax,Ac/vmax,I and KM,Ac remained rather stable indicating that acetate transport within biofilm only marginally affects reaction rates. The observed data variation mandates the requirement of a more detailed analysis with an improved experimental system, e.g., using flow conditions and a comparison with Geobacter spp. pure cultures.
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Affiliation(s)
- Benjamin Korth
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research—UFZ, Leipzig, Saxony, Germany
| | - Jörg Kretzschmar
- Biochemical Conversion Department, DBFZ Deutsches Biomasseforschungszentrum gemeinnützige GmbH, Leipzig, Saxony, Germany
| | - Manuel Bartz
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research—UFZ, Leipzig, Saxony, Germany
| | - Anne Kuchenbuch
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research—UFZ, Leipzig, Saxony, Germany
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research—UFZ, Leipzig, Saxony, Germany
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6
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Heidary N, Kornienko N, Kalathil S, Fang X, Ly KH, Greer HF, Reisner E. Disparity of Cytochrome Utilization in Anodic and Cathodic Extracellular Electron Transfer Pathways of Geobacter sulfurreducens Biofilms. J Am Chem Soc 2020; 142:5194-5203. [PMID: 32066233 PMCID: PMC7082794 DOI: 10.1021/jacs.9b13077] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Indexed: 12/18/2022]
Abstract
Extracellular electron transfer (EET) in microorganisms is prevalent in nature and has been utilized in functional bioelectrochemical systems. EET of Geobacter sulfurreducens has been extensively studied and has been revealed to be facilitated through c-type cytochromes, which mediate charge between the electrode and G. sulfurreducens in anodic mode. However, the EET pathway of cathodic conversion of fumarate to succinate is still under debate. Here, we apply a variety of analytical methods, including electrochemistry, UV-vis absorption and resonance Raman spectroscopy, quartz crystal microbalance with dissipation, and electron microscopy, to understand the involvement of cytochromes and other possible electron-mediating species in the switching between anodic and cathodic reaction modes. By switching the applied bias for a G. sulfurreducens biofilm coupled to investigating the quantity and function of cytochromes, as well as the emergence of Fe-containing particles on the cell membrane, we provide evidence of a diminished role of cytochromes in cathodic EET. This work sheds light on the mechanisms of G. sulfurreducens biofilm growth and suggests the possible existence of a nonheme, iron-involving EET process in cathodic mode.
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Affiliation(s)
- Nina Heidary
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
- Department
of Chemistry, Université de Montréal, Roger-Gaudry Building, Montreal, Quebec H3C 3J7, Canada
| | - Nikolay Kornienko
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
- Department
of Chemistry, Université de Montréal, Roger-Gaudry Building, Montreal, Quebec H3C 3J7, Canada
| | - Shafeer Kalathil
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
| | - Xin Fang
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
| | - Khoa H. Ly
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
- Fakultät
für Chemie und Lebensmittelchemie, Technische Universität Dresden, Dresden 01062, Germany
| | - Heather F. Greer
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
| | - Erwin Reisner
- Department
of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United
Kingdom
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7
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Buhrke D, Hildebrandt P. Probing Structure and Reaction Dynamics of Proteins Using Time-Resolved Resonance Raman Spectroscopy. Chem Rev 2019; 120:3577-3630. [PMID: 31814387 DOI: 10.1021/acs.chemrev.9b00429] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The mechanistic understanding of protein functions requires insight into the structural and reaction dynamics. To elucidate these processes, a variety of experimental approaches are employed. Among them, time-resolved (TR) resonance Raman (RR) is a particularly versatile tool to probe processes of proteins harboring cofactors with electronic transitions in the visible range, such as retinal or heme proteins. TR RR spectroscopy offers the advantage of simultaneously providing molecular structure and kinetic information. The various TR RR spectroscopic methods can cover a wide dynamic range down to the femtosecond time regime and have been employed in monitoring photoinduced reaction cascades, ligand binding and dissociation, electron transfer, enzymatic reactions, and protein un- and refolding. In this account, we review the achievements of TR RR spectroscopy of nearly 50 years of research in this field, which also illustrates how the role of TR RR spectroscopy in molecular life science has changed from the beginning until now. We outline the various methodological approaches and developments and point out current limitations and potential perspectives.
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Affiliation(s)
- David Buhrke
- Technische Universität Berlin, Institut für Chemie, Sekr. PC14, Straße des 17, Juni 135, D-10623 Berlin, Germany
| | - Peter Hildebrandt
- Technische Universität Berlin, Institut für Chemie, Sekr. PC14, Straße des 17, Juni 135, D-10623 Berlin, Germany
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8
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Golden J, Yates MD, Halsted M, Tender L. Application of electrochemical surface plasmon resonance (ESPR) to the study of electroactive microbial biofilms. Phys Chem Chem Phys 2018; 20:25648-25656. [PMID: 30289415 DOI: 10.1039/c8cp03898h] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Electrochemical surface plasmon resonance (ESPR) monitors faradaic processes optically by the change in refractive index that occurs with a change in redox state at the electrode surface. Here we apply ESPR to investigate the anode-grown Geobacter sulfurreducens biofilm (GSB), a model system used to study electroactive microbial biofilms (EABFs) which perform electrochemical reactions using electrodes as metabolic electron acceptors or donors. A substantial body of evidence indicates that electron transfer reactions among hemes of c-type cytochromes (c-Cyt) play major roles in the extracellular electron transfer (EET) pathways that connect intracellular metabolic processes of cells in an EABF to the electrode surface. The results reported here reveal that when the potential of the electrode is changed from relatively oxidizing (0.40 V vs. SHE) to reducing (-0.55 V vs. SHE) and then back to oxidizing, 70% of c-Cyt residing closest to the biofilm/electrode (within hundreds of nm from the electrode surface) appear to remain trapped in the reduced state, requiring as long as 12 hours to be re-oxidized. c-Cyt storing electrons cannot contribute to EET, yet turnover current resulting from cellular oxidation of acetate coupled with EET to the electrode surface is unaffected. This suggests that a relatively small fraction of c-Cyt residing closest to the biofilm/electrode interface is involved in EET while the majority store electrons. The results also reveal that biomass density at the biofilm/electrode interface increases rapidly during lag phase, reaching its maximum value at the onset of exponential biofilm growth when turnover current begins to rapidly increase.
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Affiliation(s)
- Joel Golden
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington DC, 20375, USA.
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9
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Lebedev N, Yates MD, Griva I, Tender LM. Internal Redox Polarity of an Individual G. sulfurreducens Bacterial Cell Attached to an Inorganic Substrate. Chemphyschem 2018; 19:1820-1829. [PMID: 29873443 DOI: 10.1002/cphc.201800289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Indexed: 11/09/2022]
Abstract
Bacterial cell polarity is an internal asymmetric distribution of subcellular components, including proteins, lipids, and other molecules that correlates with the cell ability to sense energy and metabolite sources, chemical signals, quorum signals, toxins, and movement in the desired directions. This ability also plays central role in cell attachment to various surfaces and biofilm formation. Mechanisms and factors controlling formation of this cell internal asymmetry are not completely understood. As a step in this direction, in the present work, we develop an approach for analyzing how information about inorganic substrate can be non-genetically coded inside an individual bacterial cell. As a model system, we use G. sulfurreducens cells attached to an inorganic mineral, mica. The approach utilizes confocal Raman microscopy, Gaussian deconvolution, and Principal Component Analysis (PCA) and allows for quick label-free identification of the molecular signature of cytochrome intracellular location and the cell to substrate binding down to the level of individual bacterial cells. Our results describe a spectroscopic signature of cell adhesion and how the information about cell adhesion can be coded inside individual bacterial cells.
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Affiliation(s)
- Nikolai Lebedev
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, Washington, DC, 20375, USA
| | - Matthew D Yates
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, Washington, DC, 20375, USA
| | - Igor Griva
- Department of Mathematical Sciences and Center of Simulation and Modeling, George Mason University, Fairfax, VA, 22030, USA
| | - Leonard M Tender
- Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, Washington, DC, 20375, USA
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10
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Katuri KP, Kalathil S, Ragab A, Bian B, Alqahtani MF, Pant D, Saikaly PE. Dual-Function Electrocatalytic and Macroporous Hollow-Fiber Cathode for Converting Waste Streams to Valuable Resources Using Microbial Electrochemical Systems. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1707072. [PMID: 29707854 DOI: 10.1002/adma.201707072] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Indexed: 06/08/2023]
Abstract
Dual-function electrocatalytic and macroporous hollow-fiber cathodes are recently proposed as promising advanced material for maximizing the conversion of waste streams such as wastewater and waste CO2 to valuable resources (e.g., clean freshwater, energy, value-added chemicals) in microbial electrochemical systems. The first part of this progress report reviews recent developments in this type of cathode architecture for the simultaneous recovery of clean freshwater and energy from wastewater. Critical insights are provided on suitable materials for fabricating these cathodes, as well as addressing some challenges in the fabrication process with proposed strategies to overcome them. The second and complementary part of the progress report highlights how the unique features of this cathode architecture can solve one of the intrinsic bottlenecks (gas-liquid mass transfer limitation) in the application of microbial electrochemical systems for CO2 reduction to value-added products. Strategies to further improve the availability of CO2 to microbial catalysts on the cathode are proposed. The importance of understanding microbe-cathode interactions, as well as electron transfer mechanisms at the cathode-cell and cell-cell interface to better design dual-function macroporous hollow-fiber cathodes, is critically discussed with insights on how the choice of material is important in facilitating direct electron transfer versus mediated electron transfer.
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Affiliation(s)
- Krishna P Katuri
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Shafeer Kalathil
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Ala'a Ragab
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Bin Bian
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Manal F Alqahtani
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
| | - Deepak Pant
- Separation and Conversion Technology, Flemish Institute for Technological Research (VITO), Boeretang 200, Mol, 2400, Belgium
| | - Pascal E Saikaly
- Biological and Environmental Sciences and Engineering (BESE) Division, Water Desalination and Reuse Center (WDRC), King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia
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11
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Schmidt I, Pieper A, Wichmann H, Bunk B, Huber K, Overmann J, Walla PJ, Schröder U. In Situ Autofluorescence Spectroelectrochemistry for the Study of Microbial Extracellular Electron Transfer. ChemElectroChem 2017. [DOI: 10.1002/celc.201700675] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Igor Schmidt
- Institute of Environmental and Sustainable Chemistry; Technische Universität Braunschweig; 38106 Braunschweig Germany
| | - Alexander Pieper
- Department of Biophysical Chemistry, Institute for Physical and Theoretical Chemistry; Technische Universität Braunschweig; 38106 Braunschweig, Germany
| | - Hilke Wichmann
- Institute of Environmental and Sustainable Chemistry; Technische Universität Braunschweig; 38106 Braunschweig Germany
| | - Boyke Bunk
- Department Microbial Ecology and Diversity Research; Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures; 38124 Braunschweig Germany
| | - Katharina Huber
- Department Microbial Ecology and Diversity Research; Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures; 38124 Braunschweig Germany
| | - Jörg Overmann
- Department Microbial Ecology and Diversity Research; Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures; 38124 Braunschweig Germany
| | - Peter Jomo Walla
- Department of Biophysical Chemistry, Institute for Physical and Theoretical Chemistry; Technische Universität Braunschweig; 38106 Braunschweig, Germany
| | - Uwe Schröder
- Institute of Environmental and Sustainable Chemistry; Technische Universität Braunschweig; 38106 Braunschweig Germany
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12
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Robuschi L, Tomba JP, Busalmen JP. Proving Geobacter biofilm connectivity with confocal Raman microscopy. J Electroanal Chem (Lausanne) 2017. [DOI: 10.1016/j.jelechem.2016.11.005] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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13
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Liu T, Wu Y, Li F, Li X, Luo X. Rapid Redox Processes ofc-Type Cytochromes in A Living Cell Suspension ofShewanella oneidensisMR-1. ChemistrySelect 2017. [DOI: 10.1002/slct.201602021] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Tongxu Liu
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 PR China
| | - Yundang Wu
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 PR China
| | - Fangbai Li
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 PR China
| | - Xiaomin Li
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 PR China
| | - Xiaobo Luo
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 PR China
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14
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Korth B, Harnisch F. Modeling Microbial Electrosynthesis. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2017; 167:273-325. [PMID: 29119203 DOI: 10.1007/10_2017_35] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Mathematical modeling is an overarching approach for assessing the complexity of microbial electrosynthesis (MES) and for complementing the relevant experimental research. By describing and linking compartments, components, and processes with appropriate mathematical equations, MES and the corresponding bioelectrodes and complete bioelectrochemical systems can be analyzed and predicted across several temporal and local scales. Thereby, insights into fundamental phenomena and mechanisms, in addition to process engineering and design can be obtained. However, a substantial lack of knowledge about extracellular electron transfer mechanisms and electrotrophic microorganisms presumably prevented the development of adequate models of MES, especially of biocathodes, so far. To propel efforts regarding this demanding task, this chapter provides a comprehensive overview of the relevant compartments, components and processes, appropriate model strategies, and a discussion on potential modeling pitfalls. By adapting an established approach to assessing the energetics of microorganism, an instruction for calculating stoichiometry, thermodynamics, and kinetics, with the example of electro-autotrophic growth at cathodes, is presented. Models of bioanodes and fundamental electrochemical equations are described to provided strategies for calculating cathodic electron-uptake reactions and connecting them to the microbial metabolism. Finally, differential equations are detailed for coupling the distinct compartments of a bioelectrochemical system. Although MES comprises anodic and cathodic reactions, the present chapter focuses on biocathodes representing a functional connection between cathode and electron-accepting microorganisms. Graphical Abstract.
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Affiliation(s)
- Benjamin Korth
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany.
| | - Falk Harnisch
- Department of Environmental Microbiology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany
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15
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Storck T, Virdis B, Batstone DJ. Modelling extracellular limitations for mediated versus direct interspecies electron transfer. THE ISME JOURNAL 2016; 10:621-31. [PMID: 26545286 PMCID: PMC4817672 DOI: 10.1038/ismej.2015.139] [Citation(s) in RCA: 110] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2014] [Revised: 06/15/2015] [Accepted: 07/01/2015] [Indexed: 12/21/2022]
Abstract
Interspecies electron transfer (IET) is important for many anaerobic processes, but is critically dependent on mode of transfer. In particular, direct IET (DIET) has been recently proposed as a metabolically advantageous mode compared with mediated IET (MIET) via hydrogen or formate. We analyse relative feasibility of these IET modes by modelling external limitations using a reaction-diffusion-electrochemical approach in a three-dimensional domain. For otherwise identical conditions, external electron transfer rates per cell pair (cp) are considerably higher for formate-MIET (317 × 10(3) e(-) cp(-1) s(-1)) compared with DIET (44.9 × 10(3) e(-) cp(-1) s(-1)) or hydrogen-MIET (5.24 × 10(3) e(-) cp(-1) s(-1)). MIET is limited by the mediator concentration gradient at which reactions are still thermodynamically feasible, whereas DIET is limited through redox cofactor (for example, cytochromes) activation losses. Model outcomes are sensitive to key parameters for external electron transfer including cofactor electron transfer rate constant and redox cofactor area, concentration or count per cell, but formate-MIET is generally more favourable for reasonable parameter ranges. Extending the analysis to multiple cells shows that the size of the network does not strongly influence relative or absolute favourability of IET modes. Similar electron transfer rates for formate-MIET and DIET can be achieved in our case with a slight (0.7 kJ mol(-1)) thermodynamic advantage for DIET. This indicates that close to thermodynamic feasibility, external limitations can be compensated for by improved metabolic efficiency when using direct electron transfer.
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Affiliation(s)
- Tomas Storck
- Advanced Water Management Centre, The University of Queensland, Brisbane, Queensland, Australia
| | - Bernardino Virdis
- Advanced Water Management Centre, The University of Queensland, Brisbane, Queensland, Australia
- Centre for Microbial Electrochemical Systems, The University of Queensland, Brisbane, Queensland, Australia
| | - Damien J Batstone
- Advanced Water Management Centre, The University of Queensland, Brisbane, Queensland, Australia
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16
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Virdis B, Millo D, Donose BC, Lu Y, Batstone DJ, Krömer JO. Analysis of electron transfer dynamics in mixed community electroactive microbial biofilms. RSC Adv 2016. [DOI: 10.1039/c5ra15676a] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Electrochemically active microbial biofilms are capable to produce electric current when grown onto electrodes. This work investigates the dynamics of electron transfer inside the biofilm as well as at the biofilm/electrode interface.
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Affiliation(s)
- Bernardino Virdis
- The University of Queensland
- Centre for Microbial Electrochemical Systems (CEMES)
- Brisbane
- Australia
- The University of Queensland
| | - Diego Millo
- Biomolecular Spectroscopy/LaserLaB Amsterdam
- Vrije Universiteit Amsterdam
- NL-1081 HV Amsterdam
- The Netherlands
| | - Bogdan C. Donose
- The University of Queensland
- Centre for Microbial Electrochemical Systems (CEMES)
- Brisbane
- Australia
- The University of Queensland
| | - Yang Lu
- The University of Queensland
- Advanced Water Management Centre (AWMC)
- Brisbane
- Australia
| | - Damien J. Batstone
- The University of Queensland
- Advanced Water Management Centre (AWMC)
- Brisbane
- Australia
| | - Jens O. Krömer
- The University of Queensland
- Centre for Microbial Electrochemical Systems (CEMES)
- Brisbane
- Australia
- The University of Queensland
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17
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In Situ Analysis of a Silver Nanoparticle-Precipitating Shewanella Biofilm by Surface Enhanced Confocal Raman Microscopy. PLoS One 2015; 10:e0145871. [PMID: 26709923 PMCID: PMC4692441 DOI: 10.1371/journal.pone.0145871] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2015] [Accepted: 12/09/2015] [Indexed: 11/19/2022] Open
Abstract
Shewanella oneidensis MR-1 is an electroactive bacterium, capable of reducing extracellular insoluble electron acceptors, making it important for both nutrient cycling in nature and microbial electrochemical technologies, such as microbial fuel cells and microbial electrosynthesis. When allowed to anaerobically colonize an Ag/AgCl solid interface, S. oneidensis has precipitated silver nanoparticles (AgNp), thus providing the means for a surface enhanced confocal Raman microscopy (SECRaM) investigation of its biofilm. The result is the in-situ chemical mapping of the biofilm as it developed over time, where the distribution of cytochromes, reduced and oxidized flavins, polysaccharides and phosphate in the undisturbed biofilm is monitored. Utilizing AgNp bio-produced by the bacteria colonizing the Ag/AgCl interface, we could perform SECRaM while avoiding the use of a patterned or roughened support or the introduction of noble metal salts and reducing agents. This new method will allow a spatially and temporally resolved chemical investigation not only of Shewanella biofilms at an insoluble electron acceptor, but also of other noble metal nanoparticle-precipitating bacteria in laboratory cultures or in complex microbial communities in their natural habitats.
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18
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Korth B, Rosa LF, Harnisch F, Picioreanu C. A framework for modeling electroactive microbial biofilms performing direct electron transfer. Bioelectrochemistry 2015; 106:194-206. [DOI: 10.1016/j.bioelechem.2015.03.010] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2014] [Revised: 03/24/2015] [Accepted: 03/30/2015] [Indexed: 01/01/2023]
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19
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Yuan Y, Li L, Zhou S. Axial Ligation of Heme in c-Type Cytochromes of LivingShewanella oneidensis: A New Insight into Enhanced Extracellular Electron Transfer. ChemElectroChem 2015. [DOI: 10.1002/celc.201500234] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Yong Yuan
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 China
| | - Laicai Li
- College of Chemistry and Material Science; Sichuan Normal University; Chengdu 610066 China
| | - Shungui Zhou
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control; Guangdong Institute of Eco-Environmental and Soil Sciences; Guangzhou 510650 China
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20
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Alves A, Ly HK, Hildebrandt P, Louro RO, Millo D. Nature of the Surface-Exposed Cytochrome-Electrode Interactions in Electroactive Biofilms of Desulfuromonas acetoxidans. J Phys Chem B 2015; 119:7968-74. [PMID: 26039558 DOI: 10.1021/acs.jpcb.5b03419] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Metal-respiring bacteria are microorganisms capable of oxidizing organic pollutants present in wastewater and transferring the liberated electrons to an electrode. This ability has led to their application as catalysts in bioelectrochemical systems (BESs), a sustainable technology coupling bioremediation to electricity production. Crucial for the functioning of these BESs is a complex protein architecture consisting of several surface-exposed multiheme proteins, called outer membrane cytochromes, wiring the cell metabolism to the electrode. Although the role of these proteins has been increasingly understood, little is known about the protein-electrode interactions and their impact on the performance of BESs. In this study, we used surface-enhanced resonance Raman spectroscopy in combination with electrochemical techniques to unravel the nature of the protein-electrode interaction for the outer membrane cytochrome OmcB from Desulfuromonas acetoxidans (Dace). Comparing the spectroelectrochemical properties of OmcB bound directly to the electrode surface with those of the same protein embedded inside an electroactive biofilm, we have shown that the surface-exposed cytochromes of Dace biofilms are in direct contact with the electrode surface. Even if direct binding causes protein denaturation, the biofilm possesses the ability to minimize the extent of the damage maximizing the amount of cells in direct electrical communication with the electrode.
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Affiliation(s)
- A Alves
- †Instituto de Tecnologia Quı́mica e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República-Estação Agronómica Nacional, 2780-157 Oeiras, Portugal
| | - H K Ly
- ‡Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - P Hildebrandt
- ‡Institut für Chemie, Technische Universität Berlin, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - R O Louro
- †Instituto de Tecnologia Quı́mica e Biológica António Xavier, Universidade Nova de Lisboa, Avenida da República-Estação Agronómica Nacional, 2780-157 Oeiras, Portugal
| | - D Millo
- §Department of Physics and Astronomy, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
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21
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Millo D, Ly HK. Towards the understanding of the effect of oxygen on the electrocatalytic activity of microbial biofilms: a spectroelectrochemical study. RSC Adv 2015. [DOI: 10.1039/c5ra17429e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Metal-respiring bacteria oxidize an organic substrate and transfer the liberated electrons to the electrode. Molecular oxygen interrupts the current flow by cutting the electrical circuit wiring the cell metabolism to the electrode.
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Affiliation(s)
- D. Millo
- Department of Physics and Astronomy
- VU University Amsterdam
- 1081 HV Amsterdam
- The Netherlands
| | - H. K. Ly
- Technische Universität Berlin
- Institut für Chemie
- Germany
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22
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Sharma M, Bajracharya S, Gildemyn S, Patil SA, Alvarez-Gallego Y, Pant D, Rabaey K, Dominguez-Benetton X. A critical revisit of the key parameters used to describe microbial electrochemical systems. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2014.02.111] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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23
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Virdis B, Millo D, Donose BC, Batstone DJ. Real-time measurements of the redox states of c-type cytochromes in electroactive biofilms: a confocal resonance Raman Microscopy study. PLoS One 2014; 9:e89918. [PMID: 24587123 PMCID: PMC3934938 DOI: 10.1371/journal.pone.0089918] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2013] [Accepted: 01/28/2014] [Indexed: 11/19/2022] Open
Abstract
Confocal Resonance Raman Microscopy (CRRM) was used to probe variations of redox state of c-type cytochromes embedded in living mixed-culture electroactive biofilms exposed to different electrode polarizations, under potentiostatic and potentiodynamic conditions. In the absence of the metabolic substrate acetate, the redox state of cytochromes followed the application of reducing and oxidizing electrode potentials. Real-time monitoring of the redox state of cytochromes during cyclic voltammetry (CV) in a potential window where cytochromes reduction occurs, evidenced a measurable time delay between the oxidation of redox cofactors probed by CV at the electrode interface, and oxidation of distal cytochromes probed by CRRM. This delay was used to tentatively estimate the diffusivity of electrons through the biofilm. In the presence of acetate, the resonance Raman spectra of young (10 days, j = 208±49 µA cm−2) and mature (57 days, j = 267±73 µA cm−2) biofilms show that cytochromes remained oxidized homogeneously even at layers as far as 70 µm from the electrode, implying the existence of slow metabolic kinetics that do not result in the formation of a redox gradient inside the biofilm during anode respiration. However, old biofilms (80 days, j = 190±37 µA cm−2) with thickness above 100 µm were characterized by reduced catalytic activity compared to the previous developing stages. The cytochromes in these biofilm were mainly in the reduced redox state, showing that only aged mixed-culture biofilms accumulate electrons during anode respiration. These results differ substantially from recent observations in pure Geobacter sulfurreducens electroactive biofilms, in which accumulation of reduced cytochromes is already observed in thinner biofilms, thus suggesting different bottlenecks in current production for mixed-culture and G. sulfurreducens biofilms.
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Affiliation(s)
- Bernardino Virdis
- Centre for Microbial Electrosynthesis (CEMES), The University of Queensland, Brisbane, Queensland, Australia
- Advanced Water Management Centre (AWMC), The University of Queensland, Brisbane, Queensland, Australia
- * E-mail:
| | - Diego Millo
- Biomolecular Spectroscopy/LaserLaB Amsterdam, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Bogdan C. Donose
- Centre for Microbial Electrosynthesis (CEMES), The University of Queensland, Brisbane, Queensland, Australia
- Advanced Water Management Centre (AWMC), The University of Queensland, Brisbane, Queensland, Australia
| | - Damien J. Batstone
- Advanced Water Management Centre (AWMC), The University of Queensland, Brisbane, Queensland, Australia
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24
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Rimboud M, Pocaznoi D, Erable B, Bergel A. Electroanalysis of microbial anodes for bioelectrochemical systems: basics, progress and perspectives. Phys Chem Chem Phys 2014; 16:16349-66. [DOI: 10.1039/c4cp01698j] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Over about the last ten years, microbial anodes have been the subject of a huge number of fundamental studies dealing with an increasing variety of possible application domains.
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Affiliation(s)
- M. Rimboud
- Laboratoire de Génie Chimique
- CNRS - Université de Toulouse
- 31432 Toulouse, France
| | - D. Pocaznoi
- Laboratoire de Génie Chimique
- CNRS - Université de Toulouse
- 31432 Toulouse, France
| | - B. Erable
- Laboratoire de Génie Chimique
- CNRS - Université de Toulouse
- 31432 Toulouse, France
| | - A. Bergel
- Laboratoire de Génie Chimique
- CNRS - Université de Toulouse
- 31432 Toulouse, France
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25
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Carmona-Martínez AA, Pierra M, Trably E, Bernet N. High current density via direct electron transfer by the halophilic anode respiring bacterium Geoalkalibacter subterraneus. Phys Chem Chem Phys 2013; 15:19699-707. [DOI: 10.1039/c3cp54045f] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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