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Bass AL, Bateman AW, Connors BM, Staton BA, Rondeau EB, Mordecai GJ, Teffer AK, Kaukinen KH, Li S, Tabata AM, Patterson DA, Hinch SG, Miller KM. Identification of infectious agents in early marine Chinook and Coho salmon associated with cohort survival. Facets (Ott) 2022. [DOI: 10.1139/facets-2021-0102] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Recent decades have seen an increased appreciation for the role infectious diseases can play in mass mortality events across a diversity of marine taxa. At the same time many Pacific salmon populations have declined in abundance as a result of reduced marine survival. However, few studies have explicitly considered the potential role pathogens could play in these declines. Using a multi-year dataset spanning 59 pathogen taxa in Chinook and Coho salmon sampled along the British Columbia coast, we carried out an exploratory analysis to quantify evidence for associations between pathogen prevalence and cohort survival and between pathogen load and body condition. While a variety of pathogens had moderate to strong negative correlations with body condition or survival for one host species in one season, we found that Tenacibaculum maritimum and Piscine orthoreovirus had consistently negative associations with body condition in both host species and seasons and were negatively associated with survival for Chinook salmon collected in the fall and winter. Our analyses, which offer the most comprehensive examination of associations between pathogen prevalence and Pacific salmon survival to date, suggest that pathogens in Pacific salmon warrant further attention, especially those whose distribution and abundance may be influenced by anthropogenic stressors.
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Affiliation(s)
- Arthur L. Bass
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Andrew W. Bateman
- Pacific Salmon Foundation, Vancouver, BC V6J 4S6, Canada
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
| | - Brendan M. Connors
- Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney, BC V8L 5T5, Canada
| | - Benjamin A. Staton
- Fisheries Science Department, Columbia River Inter-Tribal Fish Commission, Portland, OR 97232, USA
| | - Eric B. Rondeau
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Gideon J. Mordecai
- Institute for the Oceans and Fisheries, University of British Columbia, Vancouver, BC V9T 6N7, Canada
| | - Amy K. Teffer
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Karia H. Kaukinen
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Shaorong Li
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - Amy M. Tabata
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
| | - David A. Patterson
- Fisheries and Oceans Canada, School of Resource and Environmental Management, Simon Fraser University, Science Branch, Burnaby, BC V5A 1S6, Canada
| | - Scott G. Hinch
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Kristina M. Miller
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, BC, Canada
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2
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Gosselin JL, Buhle ER, Van Holmes C, Beer WN, Iltis S, Anderson JJ. Role of carryover effects in conservation of wild Pacific salmon migrating regulated rivers. Ecosphere 2021. [DOI: 10.1002/ecs2.3618] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Affiliation(s)
- Jennifer L. Gosselin
- School of Aquatic and Fishery Sciences University of Washington 1122 NE Boat Street Seattle Washington 98105 USA
| | - Eric R. Buhle
- Biomark Applied Biological Services Boise Idaho 83702 USA
| | - Christopher Van Holmes
- School of Aquatic and Fishery Sciences University of Washington 1122 NE Boat Street Seattle Washington 98105 USA
| | - W. Nicholas Beer
- School of Aquatic and Fishery Sciences University of Washington 1122 NE Boat Street Seattle Washington 98105 USA
| | - Susannah Iltis
- School of Aquatic and Fishery Sciences University of Washington 1122 NE Boat Street Seattle Washington 98105 USA
| | - James J. Anderson
- School of Aquatic and Fishery Sciences University of Washington 1122 NE Boat Street Seattle Washington 98105 USA
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3
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Environmentally triggered shifts in steelhead migration behavior and consequences for survival in the mid-Columbia River. PLoS One 2021; 16:e0250831. [PMID: 33970924 PMCID: PMC8109777 DOI: 10.1371/journal.pone.0250831] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 04/14/2021] [Indexed: 11/18/2022] Open
Abstract
The majority of Columbia River summer-run steelhead encounter high river temperatures (near or > 20°C) during their spawning migration. While some steelhead pass through the mid-Columbia River in a matter of days, others use tributary habitats as temperature refuges for periods that can last months. Using PIT tag detection data from adult return years 2004-2016, we fit 3-component mixture models to differentiate between "fast", "slow", and "overwintering" migration behaviors in five aggregated population groups. Fast fish migrated straight through the reach on average in ~7-9 days while slow fish delayed their migration for weeks to months, and overwintering fish generally took ~150-250 days. We then fit covariate models to examine what factors contributed to the probability of migration delay during summer months (slow or overwintering behaviors), and to explore how migration delay related to mortality. Finally, to account for the impact of extended residence times in the reach for fish that delayed, we compared patterns in estimated average daily rates of mortality between migration behaviors and across population groups. Results suggest that migration delay was primarily triggered by high river temperatures but temperature thresholds for delay were lowest just before the seasonal peak in river temperatures. While all populations groups demonstrated these general patterns, we documented substantial variability in temperature thresholds and length of average delays across population groups. Although migration delay was related to higher reach mortality, it was also related to lower average daily mortality rates due to the proportional increase in reach passage duration being larger than the associated increase in mortality. Lower daily mortality rates suggest that migration delay could help mitigate the impacts of harsh migration conditions, presumably through the use of thermal refuges, despite prolonged exposure to local fisheries. Future studies tracking individual populations from their migration through reproduction could help illuminate the full extent of the tradeoffs between different migration behaviors.
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Crozier LG, Burke BJ, Chasco BE, Widener DL, Zabel RW. Climate change threatens Chinook salmon throughout their life cycle. Commun Biol 2021; 4:222. [PMID: 33603119 PMCID: PMC7892847 DOI: 10.1038/s42003-021-01734-w] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Accepted: 12/03/2020] [Indexed: 11/09/2022] Open
Abstract
Widespread declines in Atlantic and Pacific salmon (Salmo salar and Oncorhynchus spp.) have tracked recent climate changes, but managers still lack quantitative projections of the viability of any individual population in response to future climate change. To address this gap, we assembled a vast database of survival and other data for eight wild populations of threatened Chinook salmon (O. tshawytscha). For each population, we evaluated climate impacts at all life stages and modeled future trajectories forced by global climate model projections. Populations rapidly declined in response to increasing sea surface temperatures and other factors across diverse model assumptions and climate scenarios. Strong density dependence limited the number of salmon that survived early life stages, suggesting a potentially efficacious target for conservation effort. Other solutions require a better understanding of the factors that limit survival at sea. We conclude that dramatic increases in smolt survival are needed to overcome the negative impacts of climate change for this threatened species.
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Affiliation(s)
- Lisa G Crozier
- Fish Ecology Division, Northwest Fisheries Science Center National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA.
| | - Brian J Burke
- Fish Ecology Division, Northwest Fisheries Science Center National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
| | - Brandon E Chasco
- Fish Ecology Division, Northwest Fisheries Science Center National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
| | - Daniel L Widener
- Ocean Associates, Inc. Under contract to Northwest Fisheries Science Center National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
| | - Richard W Zabel
- Fish Ecology Division, Northwest Fisheries Science Center National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
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5
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Chasco B, Burke B, Crozier L, Zabel R. Differential impacts of freshwater and marine covariates on wild and hatchery Chinook salmon marine survival. PLoS One 2021; 16:e0246659. [PMID: 33561177 PMCID: PMC7872236 DOI: 10.1371/journal.pone.0246659] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Accepted: 01/22/2021] [Indexed: 11/24/2022] Open
Abstract
Large-scale atmospheric conditions in the Northeast Pacific Ocean affect both the freshwater environment in the Columbia River Basin and marine conditions along the coasts of Oregon, Washington, and British Columbia, resulting in correlated conditions in the two environments. For migrating species, such as salmonids that move through multiple habitats, these correlations can amplify the impact of good or poor physical conditions on growth and survival, as movements among habitats may not alleviate effects of anomalous conditions. Unfortunately, identifying the mechanistic drivers of salmon survival in space and time is hindered by these cross-habitat correlations. To address this issue, we modeled the marine survival of Snake River spring/summer Chinook salmon with multiple indices of the marine environment and an explicit treatment of the effect of arrival timing from freshwater to the ocean, and found that both habitats contribute to marine survival rates. We show how this particular carryover effect of freshwater conditions on marine survival varies by year and rearing type (hatchery or wild), with a larger effect for wild fish. As environmental conditions change, incorporating effects from both freshwater and marine habitats into salmon survival models will become more important, and has the additional benefit of highlighting how management actions that affect arrival timing may improve marine survival.
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Affiliation(s)
- Brandon Chasco
- Fish Ecology Division, National Marine Fisheries Service, National Oceanic and Atmospheric Association, Newport, Oregon, United States of America
- * E-mail:
| | - Brian Burke
- Fish Ecology Division, National Marine Fisheries Service, National Oceanic and Atmospheric Association, Seattle, Washington, United States of America
| | - Lisa Crozier
- Fish Ecology Division, National Marine Fisheries Service, National Oceanic and Atmospheric Association, Seattle, Washington, United States of America
| | - Rich Zabel
- Fish Ecology Division, National Marine Fisheries Service, National Oceanic and Atmospheric Association, Seattle, Washington, United States of America
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6
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Munsch SH, Andrews KS, Crozier LG, Fonner R, Gosselin JL, Greene CM, Harvey CJ, Lundin JI, Pess GR, Samhouri JF, Satterthwaite WH. Potential for ecological nonlinearities and thresholds to inform Pacific salmon management. Ecosphere 2020. [DOI: 10.1002/ecs2.3302] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- Stuart H. Munsch
- Ocean Associates, Under Contract to Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
- Fish Ecology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Kelly S. Andrews
- Conservation Biology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Lisa G. Crozier
- Fish Ecology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Robert Fonner
- Conservation Biology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Jennifer L. Gosselin
- School of Aquatic and Fishery Sciences University of Washington Seattle Washington98105USA
| | - Correigh M. Greene
- Fish Ecology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Chris J. Harvey
- Conservation Biology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Jessica I. Lundin
- National Research Council Research Associateship Program, Under contract to Northwest Fisheries Science Center National Marine Fisheries ServiceNational Oceanic and Atmospheric Administration 2725 Montlake Boulevard East Seattle Washington98112USA
| | - George R. Pess
- Fish Ecology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - Jameal F. Samhouri
- Conservation Biology Division Northwest Fisheries Science Center National Marine Fisheries ServiceNOAA 2725 Montlake Boulevard East Seattle Washington98112USA
| | - William H. Satterthwaite
- Fisheries Ecology Division Southwest Fisheries Science Center National Marine Fisheries ServiceNOAA 110 McAllister Way Santa Cruz California95060USA
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7
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Snake River sockeye and Chinook salmon in a changing climate: Implications for upstream migration survival during recent extreme and future climates. PLoS One 2020; 15:e0238886. [PMID: 32997674 PMCID: PMC7526937 DOI: 10.1371/journal.pone.0238886] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 08/25/2020] [Indexed: 11/19/2022] Open
Abstract
In 2015, the Pacific marine heat wave, low river flows, and record high water temperatures in the Columbia River Basin contributed to a near-complete failure of the adult migration of endangered Snake River sockeye salmon (Oncorhynchus nerka, NOAA Fisheries 2016). These extreme weather events may become the new normal due to anthropogenic climate change, with catastrophic consequences for endangered species. Existing anthropogenic pressures may amplify vulnerability to climate change, but these potential synergies have rarely been quantified. We examined factors affecting survival of endangered sockeye (Oncorhynchus nerka) and threatened Chinook salmon (O. tshawytscha) as they migrated upstream through eight dams and reservoirs to spawning areas in the Snake River Basin. Our extensive database included histories of 17,279 individual fish that migrated since 2004. A comparison between conditions in 2015 and daily temperatures and flows in a regulated basin forced by output from global climate models showed that 2015 did have many characteristics of projected future mean conditions. To evaluate potential salmon responses, we modeled migration timing and apparent survival under historical and future climate scenarios (2040s). For Chinook salmon, adult survival from the first dam encountered to spawning grounds dropped by 4-15%, depending on the climate scenario. For sockeye, survival dropped by ~80% from their already low levels. Through sensitivity analyses, we observed that the adult sockeye migration would need to shift more than 2 weeks earlier than predicted to maintain survival rates typical of those seen during 2008-2017. Overall, the greater impacts of climate change on adult sockeye compared with adult Chinook salmon reflected differences in life history and environmental sensitivities, which were compounded for sockeye by larger effect sizes from other anthropogenic factors. Compared with Chinook, sockeye was more negatively affected by a history of juvenile transportation and by similar temperatures and flows. The largest changes in temperature and flow were projected to be upstream from the hydrosystem, where direct mitigation through hydrosystem management is not an option. Unfortunately, Snake River sockeye have likely lost much of their adaptive capacity with the loss of the wild population. Further work exploring habitat restoration or additional mitigation actions is urgently needed.
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8
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Hertz M, Jensen L, Pertoldi C, Aarestrup K, Thomsen S, Alstrup A, Asmus H, Madsen S, Svendsen J. Investigating fish migration, mortality, and physiology to improve conservation planning of anadromous salmonids: a case study on the endangered North Sea houting (Coregonus oxyrinchus). CAN J ZOOL 2019. [DOI: 10.1139/cjz-2019-0045] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Understanding migratory behavior, mortality, and physiology is essential for conservation of many species, particularly anadromous fish. In this study, freshwater and marine migrations of the endangered salmonid North Sea houting (Coregonus oxyrinchus (Linnaeus, 1758)) were investigated using telemetry. Furthermore, physiological samples were collected from North Sea houting and from resident and anadromous populations of the closely related European whitefish (Coregonus lavaretus (Linnaeus, 1758)) to compare hypo-osmotic tolerances. On average, North Sea houting spent 193 days at sea where the mortality was 36%. Most fish returned from sea in the autumn, and river entry correlated inversely with river temperature and positively with discharge. Fish spent an average of 49 days in the estuarine area. Artificial lakes negatively affected migration speeds. Migration speeds did not differ consistently between individuals (i.e., not a repeatable trait) but correlated positively with water temperature. Fish arrived at spawning areas in November. In the post-spawning state, Na+/K+-ATPase activities were elevated in North Sea houting and anadromous whitefish compared with resident whitefish, while osmolality was elevated only in North Sea houting. Our study provides important information for conservation planning related to the Habitat Directive of the European Union that lists the North Sea houting as critically endangered.
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Affiliation(s)
- M. Hertz
- Department of Chemistry and Bioscience, Section of Biology and Environmental Science, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg Ø, Denmark
| | - L.F. Jensen
- Department of Chemistry and Bioscience, Section of Biology and Environmental Science, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg Ø, Denmark
| | - C. Pertoldi
- Department of Chemistry and Bioscience, Section of Biology and Environmental Science, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg Ø, Denmark
- Aalborg Zoo, Mølleparkvej 63, 9000, Aalborg, Denmark
| | - K. Aarestrup
- National Institute of Aquatic Resources, Technical University of Denmark, Vejlsøvej 39, 8600 Silkeborg, Denmark
| | - S.N. Thomsen
- Department of Chemistry and Bioscience, Section of Biology and Environmental Science, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg Ø, Denmark
| | - A.K.O. Alstrup
- Department of Nuclear Medicine and PET Center, Institute of Clinical Medicine, Aarhus University Hospital, Nørrebrogade 44, 10C, 8000 Aarhus, Denmark
| | - H. Asmus
- Alfred Wegener Institute, Hafenstraße 43, D-25992 List, Sylt, Germany
| | - S.S. Madsen
- Department of Biology, University of Southern Denmark, Campusvej 55, 5230 Odense M, Denmark
| | - J.C. Svendsen
- National Institute of Aquatic Resources, Technical University of Denmark, Jægersborg Alle 1, 2920, Denmark
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9
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Gosselin JL, Zabel RW, Anderson JJ, Faulkner JR, Baptista AM, Sandford BP. Conservation planning for freshwater-marine carryover effects on Chinook salmon survival. Ecol Evol 2017; 8:319-332. [PMID: 29321874 PMCID: PMC5756849 DOI: 10.1002/ece3.3663] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 11/03/2017] [Indexed: 02/03/2023] Open
Abstract
Experiences of migratory species in one habitat may affect their survival in the next habitat, in what is known as carryover effects. These effects are especially relevant for understanding how freshwater experience affects survival in anadromous fishes. Here, we study the carryover effects of juvenile salmon passage through a hydropower system (Snake and Columbia rivers, northwestern United States). To reduce the direct effect of hydrosystem passage on juveniles, some fishes are transported through the hydrosystem in barges, while the others are allowed to migrate in-river. Although hydrosystem survival of transported fishes is greater than that of their run-of-river counterparts, their relative juvenile-to-adult survival (hereafter survival) can be less. We tested for carryover effects using generalized linear mixed effects models of survival with over 1 million tagged Chinook salmon, Oncorhynchus tshawytscha (Walbaum) (Salmonidae), migrating in 1999-2013. Carryover effects were identified with rear-type (wild vs. hatchery), passage-type (run-of-river vs. transported), and freshwater and marine covariates. Importantly, the Pacific Decadal Oscillation (PDO) index characterizing cool/warm (i.e., productive/nonproductive) ocean phases had a strong influence on the relative survival of rear- and passage-types. Specifically, transportation benefited wild Chinook salmon more in cool PDO years, while hatchery counterparts benefited more in warm PDO years. Transportation was detrimental for wild Chinook salmon migrating early in the season, but beneficial for later season migrants. Hatchery counterparts benefited from transportation throughout the season. Altogether, wild fish could benefit from transportation approximately 2 weeks earlier during cool PDO years, with still a benefit to hatchery counterparts. Furthermore, we found some support for hypotheses related to higher survival with increased river flow, high predation in the estuary and plume areas, and faster migration and development-related increased survival with temperature. Thus, pre- and within-season information on local- and broad-scale conditions across habitats can be useful for planning and implementing real-time conservation programs.
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Affiliation(s)
- Jennifer L Gosselin
- School of Aquatic and Fishery Sciences University of Washington Seattle WA USA
| | - Richard W Zabel
- Northwest Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration Seattle WA USA
| | - James J Anderson
- School of Aquatic and Fishery Sciences University of Washington Seattle WA USA
| | - James R Faulkner
- Northwest Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration Seattle WA USA
| | | | - Benjamin P Sandford
- Northwest Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration Pasco WA USA
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