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Lamarins A, Fririon V, Folio D, Vernier C, Daupagne L, Labonne J, Buoro M, Lefèvre F, Piou C, Oddou‐Muratorio S. Importance of interindividual interactions in eco-evolutionary population dynamics: The rise of demo-genetic agent-based models. Evol Appl 2022; 15:1988-2001. [PMID: 36540635 PMCID: PMC9753837 DOI: 10.1111/eva.13508] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 10/26/2022] [Accepted: 10/28/2022] [Indexed: 11/29/2022] Open
Abstract
The study of eco-evolutionary dynamics, that is of the intertwinning between ecological and evolutionary processes when they occur at comparable time scales, is of growing interest in the current context of global change. However, many eco-evolutionary studies overlook the role of interindividual interactions, which are hard to predict and yet central to selective values. Here, we aimed at putting forward models that simulate interindividual interactions in an eco-evolutionary framework: the demo-genetic agent-based models (DG-ABMs). Being demo-genetic, DG-ABMs consider the feedback loop between ecological and evolutionary processes. Being agent-based, DG-ABMs follow populations of interacting individuals with sets of traits that vary among the individuals. We argue that the ability of DG-ABMs to take into account the genetic heterogeneity-that affects individual decisions/traits related to local and instantaneous conditions-differentiates them from analytical models, another type of model largely used by evolutionary biologists to investigate eco-evolutionary feedback loops. Based on the review of studies employing DG-ABMs and explicitly or implicitly accounting for competitive, cooperative or reproductive interactions, we illustrate that DG-ABMs are particularly relevant for the exploration of fundamental, yet pressing, questions in evolutionary ecology across various levels of organization. By jointly modelling the effects of management practices and other eco-evolutionary processes on interindividual interactions and population dynamics, DG-ABMs are also effective prospective and decision support tools to evaluate the short- and long-term evolutionary costs and benefits of management strategies and to assess potential trade-offs. Finally, we provide a list of the recent practical advances of the ABM community that should facilitate the development of DG-ABMs.
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Affiliation(s)
- Amaïa Lamarins
- E2S UPPA, INRAE, ECOBIOPUniversité de Pau et des Pays de l'AdourSaint‐Pée‐sur‐NivelleFrance
- Management of Diadromous Fish in their Environment, OFB, INRAE, Institut AgroUniv Pau & Pays Adour/E2S UPPARennesFrance
| | - Victor Fririon
- INRAE, UR 629 Ecologie des Forêts Méditerranéennes, URFMAvignonFrance
| | - Dorinda Folio
- E2S UPPA, INRAE, ECOBIOPUniversité de Pau et des Pays de l'AdourSaint‐Pée‐sur‐NivelleFrance
| | - Camille Vernier
- CIRAD, UMR CBGP, INRAE, IRD, Montpellier SupAgroUniv. MontpellierMontpellierFrance
| | - Léa Daupagne
- E2S UPPA, INRAE, ECOBIOPUniversité de Pau et des Pays de l'AdourSaint‐Pée‐sur‐NivelleFrance
| | - Jacques Labonne
- E2S UPPA, INRAE, ECOBIOPUniversité de Pau et des Pays de l'AdourSaint‐Pée‐sur‐NivelleFrance
| | - Mathieu Buoro
- E2S UPPA, INRAE, ECOBIOPUniversité de Pau et des Pays de l'AdourSaint‐Pée‐sur‐NivelleFrance
| | - François Lefèvre
- INRAE, UR 629 Ecologie des Forêts Méditerranéennes, URFMAvignonFrance
| | - Cyril Piou
- CIRAD, UMR CBGP, INRAE, IRD, Montpellier SupAgroUniv. MontpellierMontpellierFrance
| | - Sylvie Oddou‐Muratorio
- E2S UPPA, INRAE, ECOBIOPUniversité de Pau et des Pays de l'AdourSaint‐Pée‐sur‐NivelleFrance
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Zapletal T, Šlapanský L, Grmela J. Potential Factors Limiting Brown Trout Catches by Anglers - A Case Study. ACTA UNIVERSITATIS AGRICULTURAE ET SILVICULTURAE MENDELIANAE BRUNENSIS 2021. [DOI: 10.11118/actaun.2021.031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Mammola S, Lunghi E, Bilandžija H, Cardoso P, Grimm V, Schmidt SI, Hesselberg T, Martínez A. Collecting eco-evolutionary data in the dark: Impediments to subterranean research and how to overcome them. Ecol Evol 2021; 11:5911-5926. [PMID: 34141192 PMCID: PMC8207145 DOI: 10.1002/ece3.7556] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Revised: 03/23/2021] [Accepted: 03/25/2021] [Indexed: 12/25/2022] Open
Abstract
Caves and other subterranean habitats fulfill the requirements of experimental model systems to address general questions in ecology and evolution. Yet, the harsh working conditions of these environments and the uniqueness of the subterranean organisms have challenged most attempts to pursuit standardized research.Two main obstacles have synergistically hampered previous attempts. First, there is a habitat impediment related to the objective difficulties of exploring subterranean habitats and our inability to access the network of fissures that represents the elective habitat for the so-called "cave species." Second, there is a biological impediment illustrated by the rarity of most subterranean species and their low physiological tolerance, often limiting sample size and complicating laboratory experiments.We explore the advantages and disadvantages of four general experimental setups (in situ, quasi in situ, ex situ, and in silico) in the light of habitat and biological impediments. We also discuss the potential of indirect approaches to research. Furthermore, using bibliometric data, we provide a quantitative overview of the model organisms that scientists have exploited in the study of subterranean life.Our over-arching goal is to promote caves as model systems where one can perform standardized scientific research. This is important not only to achieve an in-depth understanding of the functioning of subterranean ecosystems but also to fully exploit their long-discussed potential in addressing general scientific questions with implications beyond the boundaries of this discipline.
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Affiliation(s)
- Stefano Mammola
- Laboratory for Integrative Biodiversity Research (LIBRe)Finnish Museum of Natural History (LUOMUS)University of HelsinkiHelsinkiFinland
- Dark‐MEG: Molecular Ecology GroupWater Research Institute (IRSA)National Research Council (CNR)VerbaniaItaly
| | - Enrico Lunghi
- Key Laboratory of the Zoological Systematics and EvolutionInstitute of ZoologyChinese Academy of SciencesBeijingChina
- Museo di Storia Naturale dell'Università degli Studi di Firenze“La Specola”FirenzeItaly
| | - Helena Bilandžija
- Department of Molecular BiologyRudjer Boskovic InstituteZagrebCroatia
| | - Pedro Cardoso
- Laboratory for Integrative Biodiversity Research (LIBRe)Finnish Museum of Natural History (LUOMUS)University of HelsinkiHelsinkiFinland
| | - Volker Grimm
- Department of Ecological ModellingHelmholtz Centre for Environmental Research – UFZLeipzigGermany
- Plant Ecology and Nature ConservationUniversity of PotsdamPotsdamGermany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Susanne I. Schmidt
- Institute of HydrobiologyBiology Centre CASČeské BudějoviceCzech Republic
| | | | - Alejandro Martínez
- Dark‐MEG: Molecular Ecology GroupWater Research Institute (IRSA)National Research Council (CNR)VerbaniaItaly
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Ayllón D, Nicola GG, Elvira B, Almodóvar A. Climate change will render size‐selective harvest of cold‐water fish species unsustainable in Mediterranean freshwaters. J Appl Ecol 2020. [DOI: 10.1111/1365-2664.13805] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Daniel Ayllón
- Faculty of Biology Department of Biodiversity, Ecology and Evolution Complutense University of Madrid (UCM) Madrid Spain
| | - Graciela G. Nicola
- Department of Environmental Sciences University of Castilla‐La Mancha (UCLM) Toledo Spain
| | - Benigno Elvira
- Faculty of Biology Department of Biodiversity, Ecology and Evolution Complutense University of Madrid (UCM) Madrid Spain
| | - Ana Almodóvar
- Faculty of Biology Department of Biodiversity, Ecology and Evolution Complutense University of Madrid (UCM) Madrid Spain
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5
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Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models. Ecol Modell 2020. [DOI: 10.1016/j.ecolmodel.2020.109225] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Ayllón D, Railsback SF, Harvey BC, García Quirós I, Nicola GG, Elvira B, Almodóvar A. Mechanistic simulations predict that thermal and hydrological effects of climate change on Mediterranean trout cannot be offset by adaptive behaviour, evolution, and increased food production. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 693:133648. [PMID: 31634990 DOI: 10.1016/j.scitotenv.2019.133648] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 07/26/2019] [Accepted: 07/27/2019] [Indexed: 06/10/2023]
Abstract
Streamflow is a main driver of fish population dynamics and is projected to decrease in much of the northern hemisphere, especially in the Mediterranean region, due to climate change. However, predictions of future climate effects on cold-water freshwater fish populations have typically focused only on the ecological consequences of increasing temperatures, overlooking the concurrent and interacting effects of climate-driven changes in streamflow regimes. Here, we present simulations that contrasted the consequences of changes in thermal regime alone versus the combined effects of changes in thermal regime and streamflow for resident trout populations in distinct river types with different sensitivities to climatic change (low-altitude main river vs. high-altitude headwaters). We additionally assessed the buffering effect of increased food production that may be linked to warming. We used an eco-genetic individual-based model that integrates the behavioural and physiological effects of extrinsic environmental drivers -temperature and flow- with intrinsic dynamics -density-dependence, phenotypic plasticity and evolutionary responses - across the entire trout life cycle, with Mediterranean brown trout Salmo trutta as the model species. Our simulations indicated that: (1) Hydrological change is a critical dimension of climate change for the persistence of trout populations, in that neither river type supported viable populations under strong rates of flow change, even under scenarios of increased food production. (2) Climate-change-related environmental change most affects the largest, oldest trout via increased metabolic costs and decreased energy inputs. In both river types, populations persisted under extreme warming alone but became dominated by younger, smaller fish. (3) Density-dependent, plastic and evolutionary changes in phenology and life-history traits provide trout populations with important resilience to warming, but strong concurrent shifts in streamflow could exceed the buffering conferred by such intrinsic dynamics.
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Affiliation(s)
- Daniel Ayllón
- Complutense University of Madrid, Faculty of Biology, Department of Biodiversity, Ecology and Evolution, Madrid, Spain.
| | | | - Bret C Harvey
- Pacific Southwest Research Station, USDA Forest Service, Arcata, CA, USA
| | - Inmaculada García Quirós
- Helmholtz Centre for Environmental Research - UFZ, Department of Computational Hydrosystems, Leipzig, Germany
| | - Graciela G Nicola
- University of Castilla-La Mancha, Department of Environmental Sciences, Toledo, Spain
| | - Benigno Elvira
- Complutense University of Madrid, Faculty of Biology, Department of Biodiversity, Ecology and Evolution, Madrid, Spain
| | - Ana Almodóvar
- Complutense University of Madrid, Faculty of Biology, Department of Biodiversity, Ecology and Evolution, Madrid, Spain
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Production dynamics reveal hidden overharvest of inland recreational fisheries. Proc Natl Acad Sci U S A 2019; 116:24676-24681. [PMID: 31748272 DOI: 10.1073/pnas.1913196116] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Recreational fisheries are valued at $190B globally and constitute the predominant way in which people use wild fish stocks in developed countries, with inland systems contributing the main fraction of recreational fisheries. Although inland recreational fisheries are thought to be highly resilient and self-regulating, the rapid pace of environmental change is increasing the vulnerability of these fisheries to overharvest and collapse. Here we directly evaluate angler harvest relative to the biomass production of individual stocks for a major inland recreational fishery. Using an extensive 28-y dataset of the walleye (Sander vitreus) fisheries in northern Wisconsin, United States, we compare empirical biomass harvest (Y) and calculated production (P) and biomass (B) for 390 lake year combinations. Production overharvest occurs when harvest exceeds production in that year. Biomass and biomass turnover (P/B) declined by ∼30 and ∼20%, respectively, over time, while biomass harvest did not change, causing overharvest to increase. Our analysis revealed that ∼40% of populations were production-overharvested, a rate >10× higher than estimates based on population thresholds often used by fisheries managers. Our study highlights the need to adapt harvest to changes in production due to environmental change.
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Stubberud MW, Vindenes Y, Vøllestad LA, Winfield IJ, Stenseth NC, Langangen Ø. Effects of size- and sex-selective harvesting: An integral projection model approach. Ecol Evol 2019; 9:12556-12570. [PMID: 31788197 PMCID: PMC6875666 DOI: 10.1002/ece3.5719] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Revised: 08/07/2019] [Accepted: 09/15/2019] [Indexed: 01/20/2023] Open
Abstract
Harvesting is often size-selective, and in species with sexual size dimorphism, it may also be sex-selective. A powerful approach to investigate potential consequences of size- and/or sex-selective harvesting is to simulate it in a demographic population model. We developed a population-based integral projection model for a size- and sex-structured species, the commonly exploited pike (Esox lucius). The model allows reproductive success to be proportional to body size and potentially limited by both sexes. We ran all harvest simulations with both lower size limits and slot limits, and to quantify the effects of selective harvesting, we calculated sex ratios and the long-term population growth rate (λ). In addition, we quantified to what degree purely size-selective harvesting was sex-selective, and determined when λ shifted from being female to male limited under size- and sex-selective harvesting. We found that purely size-selective harvest can be sex-selective, and that it depends on the harvest limits and the size distributions of the sexes. For the size- and sex-selective harvest simulations, λ increased with harvest intensity up to a threshold as females limited reproduction. Beyond this threshold, males became the limiting sex, and λ decreased as more males were harvested. The peak in λ, and the corresponding sex ratio in harvest, varied with both the selectivity and the intensity of the harvest simulation. Our model represents a useful extension of size-structured population models as it includes both sexes, relaxes the assumption of female dominance, and accounts for size-dependent fecundity. The consequences of selective harvesting presented here are especially relevant for size- and sex-structured exploited species, such as commercial fisheries. Thus, our model provides a useful contribution toward the development of more sustainable harvesting regimes.
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Affiliation(s)
- Marlene Wæge Stubberud
- Department of BiosciencesCentre for Ecological and Evolutionary Synthesis (CEES)University of OsloOsloNorway
| | - Yngvild Vindenes
- Department of BiosciencesCentre for Ecological and Evolutionary Synthesis (CEES)University of OsloOsloNorway
| | - Leif Asbjørn Vøllestad
- Department of BiosciencesCentre for Ecological and Evolutionary Synthesis (CEES)University of OsloOsloNorway
| | - Ian J. Winfield
- Lake Ecosystems GroupCentre for Ecology & HydrologyLancaster Environment CentreLancasterUK
| | - Nils Christian Stenseth
- Department of BiosciencesCentre for Ecological and Evolutionary Synthesis (CEES)University of OsloOsloNorway
| | - Øystein Langangen
- Department of BiosciencesCentre for Ecological and Evolutionary Synthesis (CEES)University of OsloOsloNorway
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