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Lin Y, Xiang Y, Wei S, Zhang Q, Liu Y, Zhang Z, Tang S. Genetic diversity and population structure of an insect-pollinated and bird-dispersed dioecious tree Magnolia kwangsiensis in a fragmented karst forest landscape. Ecol Evol 2024; 14:e70094. [PMID: 39091326 PMCID: PMC11291554 DOI: 10.1002/ece3.70094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 06/24/2024] [Accepted: 07/10/2024] [Indexed: 08/04/2024] Open
Abstract
This study combined population genetics and parentage analysis to obtain foundational data for the conservation of Magnolia kwangsiensis. M. kwangsiensis is a Class I tree species that occurs in two disjunct regions in a biodiversity hotspot in southwest China. We assessed the genetic diversity and structure of this species across its distribution range to support its conservation management. Genetic diversity and population structure of 529 individuals sampled from 14 populations were investigated using seven nuclear simple sequence repeat (nSSR) markers and three chloroplast DNA (cpDNA) fragments. Parentage analysis was used to evaluate the pollen and seed dispersal distances. The nSSR marker analysis revealed a high genetic diversity in M. kwangsiensis, with an average observed (Ho) and expected heterozygosities (He) of 0.726 and 0.687, respectively. The mean and maximum pollen and seed dispersal distances were 66.4 and 95.7 m and 535.4 and 553.8 m, respectively. Our data revealed two distinct genetic groups, consistent with the disjunct geographical distribution of the M. kwangsiensis populations. Both pollen and seed dispersal movements help maintain genetic connectivity among M. kwangsiensis populations, contributing to high levels of genetic diversity. Both genetically differentiated groups corresponding to the two disjunct regions should be recognized as separate conservation units.
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Affiliation(s)
- Yanfang Lin
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
- Wuzhou No. 18 Middle SchoolWuzhouChina
| | - Yingying Xiang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
| | - Sujian Wei
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
| | - Qiwei Zhang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
| | - Yanhua Liu
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
| | - Zhiyong Zhang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
| | - Shaoqing Tang
- Key Laboratory of Ecology of Rare and Endangered Species and Environmental Protection, Ministry of EducationGuangxi Normal UniversityGuilinChina
- Guangxi Key Laboratory of Landscape Resources Conservation and Sustainable Utilization in Lijiang River BasinGuangxi Normal UniversityGuilinChina
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Martín-Hernanz S, Albaladejo RG, Lavergne S, Rubio E, Marín-Rodulfo M, Arroyo J, Aparicio A. Strong conservatism of floral morphology during the rapid diversification of the genus Helianthemum. AMERICAN JOURNAL OF BOTANY 2023; 110:e16155. [PMID: 36912727 DOI: 10.1002/ajb2.16155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 02/21/2023] [Accepted: 02/22/2023] [Indexed: 05/16/2023]
Abstract
PREMISE Divergence of floral morphology and breeding systems are often expected to be linked to angiosperm diversification and environmental niche divergence. However, available evidence for such relationships is not generalizable due to different taxonomic, geographical and time scales. The Palearctic genus Helianthemum shows the highest diversity of the family Cistaceae in terms of breeding systems, floral traits, and environmental conditions as a result of three recent evolutionary radiations since the Late Miocene. Here, we investigated the tempo and mode of evolution of floral morphology in the genus and its link with species diversification and environmental niche divergence. METHODS We quantified 18 floral traits from 83 taxa and applied phylogenetic comparative methods using a robust phylogenetic framework based on genotyping-by-sequencing data. RESULTS We found three different floral morphologies, putatively related to three different breeding systems: type I, characterized by small flowers without herkogamy and low pollen to ovule ratio; type II, represented by large flowers with approach herkogamy and intermediate pollen to ovule ratio; and type III, featured by small flowers with reverse herkogamy and the highest pollen to ovule ratio. Each morphology has been highly conserved across each radiation and has evolved independently of species diversification and ecological niche divergence. CONCLUSIONS The combined results of trait, niche, and species diversification ultimately recovered a pattern of potentially non-adaptive radiations in Helianthemum and highlight the idea that evolutionary radiations can be decoupled from floral morphology evolution even in lineages that diversified in heterogeneous environments as the Mediterranean Basin.
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Affiliation(s)
- Sara Martín-Hernanz
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
- Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK
| | - Rafael G Albaladejo
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
| | - Sébastien Lavergne
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, Laboratoire d'Ecologie Alpine (LECA), FR-38000, Grenoble, France
| | - Encarnación Rubio
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
| | - Macarena Marín-Rodulfo
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
- Departamento de Botánica, Facultad de Ciencias, Universidad de Granada, Granada, Spain
| | - Juan Arroyo
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Sevilla, Spain
| | - Abelardo Aparicio
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
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Martín-Hernanz S, Albaladejo RG, Lavergne S, Rubio E, Grall A, Aparicio A. Biogeographic history and environmental niche evolution in the palearctic genus Helianthemum (Cistaceae). Mol Phylogenet Evol 2021; 163:107238. [PMID: 34197899 DOI: 10.1016/j.ympev.2021.107238] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 05/27/2021] [Accepted: 06/24/2021] [Indexed: 11/30/2022]
Abstract
The biogeographic history and the degree of environmental niche conservatism provide essential clues to decipher the underlying macroevolutionary processes of species diversification and to understand contemporary patterns of biodiversity. The genus Helianthemum constitutes an excellent case study to investigate the impact of the geo-climatic changes and the environmental niche shifts on the origins of plant species diversity in the Mediterranean hotspot. It is a palearctic species-rich lineage with c. 140 species and subspecies mostly belonging to three distinct evolutionary radiations, almost confined to the Mediterranean region and occurring across varied environmental conditions. In this work, we studied the ample and rapid diversification of the genus Helianthemum across its whole distribution range by performing phylogenetic reconstructions of ancestral ranges and environmental niche evolution. We observed a striking synchrony of biogeographic movements with niche shifts between the three major clades of the genus Helianthemum, likely related to the geo-climatic events occurred in the Mediterranean Basin since the Upper Miocene. In particular, Late Miocene and Early Pliocene were dominated by episodes of range expansions, the Late Pliocene by range contraction and vicariance events, and Pleistocene by most intense environmental niche shifts and in-situ diversification. Our study also provides evidence for four main environmental niches in Helianthemum (i.e., Mediterranean, subdesert, humid-montane and subtropical-insular) and a tendency toward environmental niche conservatism within different subclades, with few niche shifts mostly occurring from Mediterranean ancestors. The relative longer time spent in Mediterranean areas by the ancestors of Helianthemum suggests that the larger species diversity observed in the Mediterranean (i.e. Northern Africa and Southern Europe) may have been generated by a time-for-speciation effect reinforced by environmental niche conservatism. Overall, our work highlights the role of the Mediterranean Basin as a 'cradle of diversity' and an 'evolutionary hub', facilitating the environmental transitions and determining the building up of a global plant biodiversity hotspot.
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Affiliation(s)
- Sara Martín-Hernanz
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain.
| | - Rafael G Albaladejo
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
| | - Sébastien Lavergne
- Laboratoire d'Ecologie Alpine (LECA), CNRS - Université Grenoble Alpes - Université Savoie Mont Blanc, FR-38000 Grenoble, France
| | - Encarnación Rubio
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
| | - Aurélie Grall
- Herbarium, Royal Botanic Gardens, Kew, Richmond, Surrey, United Kingdom
| | - Abelardo Aparicio
- Departamento de Biología Vegetal y Ecología, Facultad de Farmacia, Universidad de Sevilla, Sevilla, Spain
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Albaladejo RG, Martín-Hernanz S, Reyes-Betancort JA, Santos-Guerra A, Olangua-Corral M, Aparicio A. Reconstruction of the spatio-temporal diversification and ecological niche evolution of Helianthemum (Cistaceae) in the Canary Islands using genotyping-by-sequencing data. ANNALS OF BOTANY 2021; 127:597-611. [PMID: 32386290 PMCID: PMC8052925 DOI: 10.1093/aob/mcaa090] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 05/02/2020] [Indexed: 05/14/2023]
Abstract
BACKGROUND AND AIMS Several biogeographical models have been proposed to explain the colonization and diversification patterns of Macaronesian lineages. In this study, we calculated the diversification rates and explored what model best explains the current distribution of the 15 species endemic to the Canary Islands belonging to Helianthemum sect. Helianthemum (Cistaceae). METHODS We performed robust phylogenetic reconstructions based on genotyping-by-sequencing data and analysed the timing, biogeographical history and ecological niche conservatism of this endemic Canarian clade. KEY RESULTS Our phylogenetic analyses provided strong support for the monophyly of this clade, and retrieved five lineages not currently restricted to a single island. The pristine colonization event took place in the Pleistocene (~1.82 Ma) via dispersal to Tenerife by a Mediterranean ancestor. CONCLUSIONS The rapid and abundant diversification (0.75-1.85 species per million years) undergone by this Canarian clade seems the result of complex inter-island dispersal events followed by allopatric speciation driven mostly by niche conservatism, i.e. inter-island dispersal towards niches featuring similar environmental conditions. Nevertheless, significant instances of ecological niche shifts have also been observed in some lineages, making an important contribution to the overall diversification history of this clade.
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Affiliation(s)
- Rafael G Albaladejo
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
| | - Sara Martín-Hernanz
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
- For correspondence. E-mail
| | - J Alfredo Reyes-Betancort
- Jardín de Aclimatación de la Orotava (Instituto Canario de Investigaciones Agrarias - ICIA), Puerto de la Cruz, Santa Cruz de Tenerife, Spain
| | - Arnoldo Santos-Guerra
- Jardín de Aclimatación de la Orotava (Instituto Canario de Investigaciones Agrarias - ICIA), Puerto de la Cruz, Santa Cruz de Tenerife, Spain
| | - María Olangua-Corral
- Departamento de Biología Reproductiva y Micro-morfología, Jardín Botánico Canario ‘Viera y Clavijo’—Unidad Asociada CSIC (Cabildo de Gran Canaria), Las Palmas de Gran Canaria, Spain
| | - Abelardo Aparicio
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
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Mota J, Merlo E, Martínez-Hernández F, Mendoza-Fernández AJ, Pérez-García FJ, Salmerón-Sánchez E. Plants on Rich-Magnesium Dolomite Barrens: A Global Phenomenon. BIOLOGY 2021; 10:38. [PMID: 33429992 PMCID: PMC7826976 DOI: 10.3390/biology10010038] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2020] [Revised: 12/24/2020] [Accepted: 01/05/2021] [Indexed: 11/21/2022]
Abstract
For botanists and ecologists, the close link between some plants and substrates, such as serpentine or gypsum, is well known. However, the relationship between dolomite and its flora has been much less studied, due to various causes. Its diffuse separation from limestone and the use of a vague approach and terminology that, until now, no one has tried to harmonize are among these reasons. After carrying out an extensive review, completed with data on the distribution of plants linked to dolomite, the territories in which this type of flora appears at a global level were mapped using a geographic information system software. In addition, data on soils were collected, as well as on their influence on the ionomic profile of the flora. These data were completed with the authors' own information from previous research, which also served to assess these communities' degree of conservation and the genetic diversity of some of their characteristic species. The results showed that the so-called "dolomite phenomenon" is widely represented and is clearly manifested in the appearance of a peculiar flora, very rich in endemisms, on dry soils, poor in nutrients, and with a high Mg level. Although dolomite habitats cause adaptations in plants which are even more recognizable than those of other rock types, they have not been widely studied from an ecological, evolutionary, and conservation point of view because, so far, neither their characteristics nor their universal demarcation have been precisely defined.
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Affiliation(s)
- Juan Mota
- Departamento de Biología y Geología, CEI·MAR and CECOUAL, Universidad de Almería, 04120 Almería, Spain; (J.M.); (E.M.); (F.M.-H.); (A.J.M.-F.); (F.J.P.-G.)
| | - Encarna Merlo
- Departamento de Biología y Geología, CEI·MAR and CECOUAL, Universidad de Almería, 04120 Almería, Spain; (J.M.); (E.M.); (F.M.-H.); (A.J.M.-F.); (F.J.P.-G.)
| | - Fabián Martínez-Hernández
- Departamento de Biología y Geología, CEI·MAR and CECOUAL, Universidad de Almería, 04120 Almería, Spain; (J.M.); (E.M.); (F.M.-H.); (A.J.M.-F.); (F.J.P.-G.)
| | - Antonio J. Mendoza-Fernández
- Departamento de Biología y Geología, CEI·MAR and CECOUAL, Universidad de Almería, 04120 Almería, Spain; (J.M.); (E.M.); (F.M.-H.); (A.J.M.-F.); (F.J.P.-G.)
- Departamento de Botánica, Unidad de Conservación Vegetal, Universidad de Granada, 18071 Granada, Spain
| | - Francisco Javier Pérez-García
- Departamento de Biología y Geología, CEI·MAR and CECOUAL, Universidad de Almería, 04120 Almería, Spain; (J.M.); (E.M.); (F.M.-H.); (A.J.M.-F.); (F.J.P.-G.)
| | - Esteban Salmerón-Sánchez
- Departamento de Biología y Geología, CEI·MAR and CECOUAL, Universidad de Almería, 04120 Almería, Spain; (J.M.); (E.M.); (F.M.-H.); (A.J.M.-F.); (F.J.P.-G.)
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Corlett RT, Tomlinson KW. Climate Change and Edaphic Specialists: Irresistible Force Meets Immovable Object? Trends Ecol Evol 2020; 35:367-376. [PMID: 31959419 DOI: 10.1016/j.tree.2019.12.007] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 12/13/2019] [Accepted: 12/16/2019] [Indexed: 12/18/2022]
Abstract
Species exposed to anthropogenic climate change can acclimate, adapt, move, or be extirpated. It is often assumed that movement will be the dominant response, with populations tracking their climate envelopes in space, but the numerous species restricted to specialized substrates cannot easily move. In warmer regions of the world, such edaphic specialists appear to have accumulated in situ over millions of years, persisting despite climate change by local movements, plastic responses, and genetic adaptation. However, past climates were usually cooler than today and rates of warming slower, while edaphic islands are now exposed to multiple additional threats, including mining. Modeling studies that ignore edaphic constraints on climate change responses may therefore give misleading results for a significant proportion of all taxa.
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Affiliation(s)
- Richard T Corlett
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Mengla, Yunnan 666303, China.
| | - Kyle W Tomlinson
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, China; Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Mengla, Yunnan 666303, China
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Martín-Hernanz S, Aparicio A, Fernández-Mazuecos M, Rubio E, Reyes-Betancort JA, Santos-Guerra A, Olangua-Corral M, Albaladejo RG. Maximize Resolution or Minimize Error? Using Genotyping-By-Sequencing to Investigate the Recent Diversification of Helianthemum (Cistaceae). FRONTIERS IN PLANT SCIENCE 2019; 10:1416. [PMID: 31781140 PMCID: PMC6859804 DOI: 10.3389/fpls.2019.01416] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Accepted: 10/11/2019] [Indexed: 05/27/2023]
Abstract
A robust phylogenetic framework, in terms of extensive geographical and taxonomic sampling, well-resolved species relationships and high certainty of tree topologies and branch length estimations, is critical in the study of macroevolutionary patterns. Whereas Sanger sequencing-based methods usually recover insufficient phylogenetic signal, especially in recently diversified lineages, reduced-representation sequencing methods tend to provide well-supported phylogenetic relationships, but usually entail remarkable bioinformatic challenges due to the inherent trade-off between the number of SNPs and the magnitude of associated error rates. The genus Helianthemum (Cistaceae) is a species-rich and taxonomically complex Palearctic group of plants that diversified mainly since the Upper Miocene. It is a challenging case study since previous attempts using Sanger sequencing were unable to resolve the intrageneric phylogenetic relationships. Aiming to obtain a robust phylogenetic reconstruction based on genotyping-by-sequencing (GBS), we established a rigorous methodological workflow in which we i) explored how variable settings during dataset assembly have an impact on error rates and on the degree of resolution under concatenation and coalescent approaches, ii) assessed the effect of two extreme parameter configurations (minimizing error rates vs. maximizing phylogenetic resolution) on tree topology and branch lengths, and iii) evaluated the effects of these two configurations on estimates of divergence times and diversification rates. Our analyses produced highly supported topologically congruent phylogenetic trees for both configurations. However, minimizing error rates did produce more reliable branch lengths, critically affecting the accuracy of downstream analyses (i.e. divergence times and diversification rates). In addition to recommending a revision of intrageneric systematics, our results enabled us to identify three highly diversified lineages in Helianthemum in contrasting geographical areas and ecological conditions, which started radiating in the Upper Miocene.
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Affiliation(s)
- Sara Martín-Hernanz
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
| | - Abelardo Aparicio
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
| | | | - Encarnación Rubio
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
| | - J. Alfredo Reyes-Betancort
- Jardín de Aclimatación de la Orotava, Instituto Canario de Investigaciones Agrarias (ICIA), Santa Cruz de Tenerife, Spain
| | - Arnoldo Santos-Guerra
- Jardín de Aclimatación de la Orotava, Instituto Canario de Investigaciones Agrarias (ICIA), Santa Cruz de Tenerife, Spain
| | - María Olangua-Corral
- Departamento de Biología Reproductiva y Micro-morfología, Jardín Botánico Canario ‘Viera y Clavijo’—Unidad Asociada CSIC (Cabildo de Gran Canaria), Las Palmas de Gran Canaria, Spain
| | - Rafael G. Albaladejo
- Departamento de Biología Vegetal y Ecología, Universidad de Sevilla, Sevilla, Spain
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