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Brown K, Monk J, Williams J, Carroll A, Harasti D, Barrett N. Depth and benthic habitat influence shallow and mesophotic predatory fishes on a remote, high-latitude coral reef. PLoS One 2022; 17:e0265067. [PMID: 35324946 PMCID: PMC8947262 DOI: 10.1371/journal.pone.0265067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 02/22/2022] [Indexed: 11/18/2022] Open
Abstract
Predatory fishes on coral reefs continue to decline globally despite playing key roles in ecosystem functioning. Remote atolls and platform reefs provide potential refugia for predator populations, but quantitative information on their spatial distribution is required to establish accurate baselines for ongoing monitoring and conservation management. Current knowledge of predatory fish populations has been derived from targeted shallow diver-based surveys (<15 m). However, the spatial distribution and extent of predatory fishes on outer mesophotic shelf environments has remained under described. Middleton Reef is a remote, high-latitude, oceanic platform reef that is located within a no-take area in the Lord Howe Marine Park off eastern Australia. Here we used baited remote underwater stereo video to sample predatory fishes across lagoon and outer shelf habitats from depths 0–100 m, extending knowledge on use of mesophotic depths and habitats. Many predatory fish demonstrated clear depth and habitat associations over this depth range. Carcharhinid sharks and Carangid fishes were the most abundant predators sampled on Middleton Reef, with five predatory fishes accounting for over 90% of the predator fish biomass. Notably, Galapagos shark (Carcharhinus galapagensis) and the protected black rockcod (Epinephelus daemelii) dominated the predator fish assemblage. A higher richness of predator fish species was sampled on reef areas north and south of the lagoon. The more exposed southern aspect of the reef supported a different suite of predator fish across mesophotic habitats relative to the assemblage recorded in the north and lagoonal habitats, a pattern potentially driven by differences in hard coral cover. Biomass of predatory fishes in the more sheltered north habitats was twice that of other areas, predominantly driven by high abundances of Galapagos shark. This work adds to the growing body of literature highlighting the conservation value of isolated oceanic reefs and the need to ensure that lagoon, shallow and mesophotic habitats in these systems are adequately protected, as they support vulnerable ecologically and economically important predator fish assemblages.
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Affiliation(s)
- Kristy Brown
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
| | - Jacquomo Monk
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
- * E-mail:
| | - Joel Williams
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
- Fisheries Research, Port Stephens Fisheries Institute, NSW Department of Primary Industries, Taylors Beach, NSW, Australia
| | | | - David Harasti
- Fisheries Research, Port Stephens Fisheries Institute, NSW Department of Primary Industries, Taylors Beach, NSW, Australia
| | - Neville Barrett
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
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Lester EK, Langlois TJ, McCormick MI, Simpson SD, Bond T, Meekan MG. Relative influence of predators, competitors and seascape heterogeneity on behaviour and abundance of coral reef mesopredators. OIKOS 2021. [DOI: 10.1111/oik.08463] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Emily K. Lester
- School of Biological Sciences and the UWA Oceans Inst., Univ. of Western Australia Crawley WA Australia
- Australian Inst. of Marine Science, UWA Oceans Inst. Crawley WA Australia
| | - Tim J. Langlois
- School of Biological Sciences and the UWA Oceans Inst., Univ. of Western Australia Crawley WA Australia
| | - Mark I. McCormick
- Coastal Marine Field Station, School of Science, Univ of Waikato Tauranga New Zealand
| | | | - Todd Bond
- School of Biological Sciences and the UWA Oceans Inst., Univ. of Western Australia Crawley WA Australia
| | - Mark G. Meekan
- Australian Inst. of Marine Science, UWA Oceans Inst. Crawley WA Australia
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Birt MJ, Cure K, Wilson S, Newman SJ, Harvey ES, Meekan M, Speed C, Heyward A, Goetze J, Gilmour J. Isolated reefs support stable fish communities with high abundances of regionally fished species. Ecol Evol 2021; 11:4701-4718. [PMID: 33976841 PMCID: PMC8093692 DOI: 10.1002/ece3.7370] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 12/22/2020] [Accepted: 02/18/2021] [Indexed: 12/31/2022] Open
Abstract
Anthropogenic impacts at isolated and inaccessible reefs are often minimal, offering rare opportunities to observe fish assemblages in a relatively undisturbed state. The remote Rowley Shoals are regarded as one of the healthiest reef systems in the Indian Ocean with demonstrated resilience to natural disturbance, no permanent human population nearby, low visitation rates, and large protected areas where fishing prohibitions are enforced. We used baited remote underwater video systems (BRUVS) to quantify fish assemblages and the relative abundance of regionally fished species within the lagoon, on the slope and in the mesophotic habitat at the Rowley Shoals at three times spanning 14 years and compared abundances of regionally fished species and the length distributions of predatory species to other isolated reefs in the northeast Indian Ocean. Fish assemblage composition and the relative abundance of regionally fished species were remarkably stable through time. We recorded high abundances of regionally fished species relative to other isolated reefs, including globally threatened humphead Maori wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum). Length distributions of fish differed among habitats at the Rowley Shoals, suggesting differences in ontogenetic shifts among species. The Cocos (Keeling) Islands typically had larger-bodied predatory species than at the Rowley Shoals. Differences in geomorphology, lagoonal habitats, and fishing history likely contribute to the differences among remote reefs. Rowley Shoals is a rare example of a reef system demonstrating ecological stability in reef fish assemblages during a time of unprecedented degradation of coral reefs.
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Affiliation(s)
- Matthew J. Birt
- The Australian Institute of Marine ScienceIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
| | - Katherine Cure
- The Australian Institute of Marine ScienceIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
| | - Shaun Wilson
- Marine Science ProgramDepartment of Biodiversity, Conservation and AttractionsGovernment of Western Australia17 Dick Perry AveKensingtonWA6151Australia
- Oceans InstituteThe University of Western AustraliaIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
| | - Stephen J. Newman
- Western Australian Fisheries and Marine Research LaboratoriesDepartment of Primary Industries and Regional DevelopmentGovernment of Western AustraliaP.O Box 20North BeachWA6920Australia
| | - Euan S. Harvey
- School of Molecular and Life SciencesCurtin UniversityPerthWAAustralia
| | - Mark Meekan
- The Australian Institute of Marine ScienceIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
| | - Conrad Speed
- The Australian Institute of Marine ScienceIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
| | - Andrew Heyward
- The Australian Institute of Marine ScienceIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
- Oceans InstituteThe University of Western AustraliaIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
| | - Jordan Goetze
- Marine Science ProgramDepartment of Biodiversity, Conservation and AttractionsGovernment of Western Australia17 Dick Perry AveKensingtonWA6151Australia
- School of Molecular and Life SciencesCurtin UniversityPerthWAAustralia
| | - James Gilmour
- The Australian Institute of Marine ScienceIndian Ocean Marine Research Centre, Cnr of Fairway and Service Road 4PerthWA6009Australia
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Eisele MH, Madrigal-Mora S, Espinoza M. Drivers of reef fish assemblages in an upwelling region from the Eastern Tropical Pacific Ocean. JOURNAL OF FISH BIOLOGY 2021; 98:1074-1090. [PMID: 33274754 DOI: 10.1111/jfb.14639] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 12/01/2020] [Indexed: 06/12/2023]
Abstract
Reef fish assemblages are exposed to a wide range of anthropogenic threats as well as chronic natural disturbances. In upwelling regions, for example, there is a seasonal influx of cool nutrient-rich waters that may shape the structure and composition of reef fish assemblages. Given that climate change may disrupt the natural oceanographic processes by altering the frequency and strength of natural disturbances, understanding how fish assemblages respond to upwelling events is essential to effectively manage reef ecosystems under changing ocean conditions. This study used the baited remote underwater video stations (BRUVS) and the traditional underwater visual census (UVC) to investigate the spatiotemporal patterns of reef fish assemblages in an upwelling region in the North Pacific of Costa Rica. A total of 183 reef fish species from 60 families were recorded, of which 166 species were detected using BRUVS and 122 using UVC. Only 66% of all species were detected using both methods. This study showed that the upwelling had an important role in shaping reef fish assemblages in this region, but there was also a significant interaction between upwelling and location. In addition, other drivers such as habitat complexity and habitat composition had an effect on reef fish abundances and species. To authors' knowledge, this is the first study in the Eastern Tropical Pacific that combines BRUVS and UVC to monitor reef fish assemblages in an upwelling region, which provides more detailed information to assess the state of reef ecosystems in response to multiple threats and changing ocean conditions.
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Affiliation(s)
- Marius H Eisele
- Evolutionary Ecology and Conservation Genomics, Faculty of Natural Sciences, Ulm University, Ulm, Germany
- Computer Science, Faculty of Science, University of Tübingen, Tübingen, Germany
| | - Sergio Madrigal-Mora
- Centro de Investigación en Ciencias del Mar y Limnología (CIMAR), Universidad de Costa Rica, San José, Costa Rica
- Escuela de Biología, Universidad de Costa Rica, San José, Costa Rica
| | - Mario Espinoza
- Centro de Investigación en Ciencias del Mar y Limnología (CIMAR), Universidad de Costa Rica, San José, Costa Rica
- Escuela de Biología, Universidad de Costa Rica, San José, Costa Rica
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Espinoza M, Araya-Arce T, Chaves-Zamora I, Chinchilla I, Cambra M. Monitoring elasmobranch assemblages in a data-poor country from the Eastern Tropical Pacific using baited remote underwater video stations. Sci Rep 2020; 10:17175. [PMID: 33057085 PMCID: PMC7560706 DOI: 10.1038/s41598-020-74282-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Accepted: 09/03/2020] [Indexed: 11/18/2022] Open
Abstract
Understanding how threatened species are distributed in space and time can have direct applications to conservation planning. However, implementing standardized methods to monitor populations of wide-ranging species is often expensive and challenging. In this study, we used baited remote underwater video stations (BRUVS) to quantify elasmobranch abundance and distribution patterns across a gradient of protection in the Pacific waters of Costa Rica. Our BRUVS survey detected 29 species, which represents 54% of the entire elasmobranch diversity reported to date in shallow waters (< 60 m) of the Pacific of Costa Rica. Our data demonstrated that elasmobranchs benefit from no-take MPAs, yet large predators are relatively uncommon or absent from open-fishing sites. We showed that BRUVS are capable of providing fast and reliable estimates of the distribution and abundance of data-poor elasmobranch species over large spatial and temporal scales, and in doing so, they can provide critical information for detecting population-level changes in response to multiple threats such as overfishing, habitat degradation and climate change. Moreover, given that 66% of the species detected are threatened, a well-designed BRUVS survey may provide crucial population data for assessing the conservation status of elasmobranchs. These efforts led to the establishment of a national monitoring program focused on elasmobranchs and key marine megafauna that could guide monitoring efforts at a regional scale.
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Affiliation(s)
- Mario Espinoza
- Centro de Investigación en Ciencias del Mar y Limnología, Universidad de Costa Rica, 2060-11501, San José, Costa Rica.
- Escuela de Biologia, Universidad de Costa Rica, 2060-11501, San José, Costa Rica.
- Museo de Zoología, Universidad de Costa Rica, 2060-11501, San José, Costa Rica.
| | - Tatiana Araya-Arce
- Centro de Investigación en Ciencias del Mar y Limnología, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
- Escuela de Biologia, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
| | - Isaac Chaves-Zamora
- Centro de Investigación en Ciencias del Mar y Limnología, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
- Escuela de Biologia, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
- Centro de Investigación en Estructuras Microscópicas, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
| | - Isaac Chinchilla
- Área de Conservación Marina Cocos (ACMCO), Sistema Nacional de Áreas de Conservación, Costa Rica, 2060-11501, San José, Costa Rica
| | - Marta Cambra
- Centro de Investigación en Ciencias del Mar y Limnología, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
- Escuela de Biologia, Universidad de Costa Rica, 2060-11501, San José, Costa Rica
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Patel E, Bernard AM, Mehlrose M, Harned S, Finnegan KA, Fitzpatrick CK, Lea JS, Shivji MS. The complete mitochondrial genome of a gray reef shark, Carcharhinus amblyrhynchos (Carcharhiniformes: Carcharhinidae), from the Western Indian Ocean. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:3498-3499. [PMID: 33458217 PMCID: PMC7782100 DOI: 10.1080/23802359.2020.1827064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
We present the mitochondrial genome sequence of a gray reef shark, Carcharhinus amblyrhynchos (Bleeker 1856), a coral reef associated species. This is the first mitogenome for this species from the western Indian Ocean. The mitogenome is 16,705 bp in length, has 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and a non-coding control region, and demonstrates a gene arrangement congruent with other shark and most vertebrate species. This mitogenome provides a genomic resource for assisting with population, evolutionary and conservation studies for the gray reef shark, which is increasingly under threat from fisheries.
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Affiliation(s)
- Ela Patel
- Save Our Seas Foundation Shark Research Center, Nova Southeastern University, Florida, USA.,Trinity Preparatory School, Florida, USA
| | - Andrea M Bernard
- Save Our Seas Foundation Shark Research Center, Nova Southeastern University, Florida, USA
| | - Marissa Mehlrose
- Save Our Seas Foundation Shark Research Center, Nova Southeastern University, Florida, USA
| | - Sydney Harned
- Save Our Seas Foundation Shark Research Center, Nova Southeastern University, Florida, USA
| | - Kimberly A Finnegan
- Save Our Seas Foundation Shark Research Center, Nova Southeastern University, Florida, USA
| | - Cristín K Fitzpatrick
- State Fisheries Genomics Lab, Department of Fisheries and Wildlife, Oregon State University, Oregon, USA
| | - James S Lea
- Save Our Seas Foundation, Geneva, Switzerland.,Department of Zoology, University of Cambridge, Cambridge, UK
| | - Mahmood S Shivji
- Save Our Seas Foundation Shark Research Center, Nova Southeastern University, Florida, USA
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7
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Langlois T, Goetze J, Bond T, Monk J, Abesamis RA, Asher J, Barrett N, Bernard ATF, Bouchet PJ, Birt MJ, Cappo M, Currey‐Randall LM, Driessen D, Fairclough DV, Fullwood LAF, Gibbons BA, Harasti D, Heupel MR, Hicks J, Holmes TH, Huveneers C, Ierodiaconou D, Jordan A, Knott NA, Lindfield S, Malcolm HA, McLean D, Meekan M, Miller D, Mitchell PJ, Newman SJ, Radford B, Rolim FA, Saunders BJ, Stowar M, Smith ANH, Travers MJ, Wakefield CB, Whitmarsh SK, Williams J, Harvey ES. A field and video annotation guide for baited remote underwater stereo‐video surveys of demersal fish assemblages. Methods Ecol Evol 2020. [DOI: 10.1111/2041-210x.13470] [Citation(s) in RCA: 68] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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