Habitat selection differs across hierarchical behaviors: selection of patches and intensity of patch use

Combined effects of landscape fragmentation and sampling frequency of movement data on the assessment of landscape connectivity

BACKGROUND

Network theory is largely applied in real-world systems to assess landscape connectivity using empirical or theoretical networks. Empirical networks are usually built from discontinuous individual movement trajectories without knowing the effect of relocation frequency on the assessment of landscape connectivity while theoretical networks generally rely on simple movement rules. We investigated the combined effects of relocation sampling frequency and landscape fragmentation on the assessment of landscape connectivity using simulated trajectories and empirical high-resolution (1 Hz) trajectories of Alpine ibex (Capra ibex). We also quantified the capacity of commonly used theoretical networks to accurately predict landscape connectivity from multiple movement processes.

METHODS

We simulated forager trajectories from continuous correlated biased random walks in simulated landscapes with three levels of landscape fragmentation. High-resolution ibex trajectories were reconstructed using GPS-enabled multi-sensor biologging data and the dead-reckoning technique. For both simulated and empirical trajectories, we generated spatial networks from regularly resampled trajectories and assessed changes in their topology and information loss depending on the resampling frequency and landscape fragmentation. We finally built commonly used theoretical networks in the same landscapes and compared their predictions to actual connectivity.

RESULTS

We demonstrated that an accurate assessment of landscape connectivity can be severely hampered (e.g., up to 66% of undetected visited patches and 29% of spurious links) when the relocation frequency is too coarse compared to the temporal dynamics of animal movement. However, the level of landscape fragmentation and underlying movement processes can both mitigate the effect of relocation sampling frequency. We also showed that network topologies emerging from different movement behaviours and a wide range of landscape fragmentation were complex, and that commonly used theoretical networks accurately predicted only 30-50% of landscape connectivity in such environments.

CONCLUSIONS

Very high-resolution trajectories were generally necessary to accurately identify complex network topologies and avoid the generation of spurious information on landscape connectivity. New technologies providing such high-resolution datasets over long periods should thus grow in the movement ecology sphere. In addition, commonly used theoretical models should be applied with caution to the study of landscape connectivity in real-world systems as they did not perform well as predictive tools.

Preference for ground cover when selecting burrow entrances in plateau pikas

Burrow-dwelling animals such as the plateau pika (Ochotona curzoniae) often seek sturdy entrances for their burrows, which can reduce the need for frequent maintenance. The toughness of the ground surface is often reinforced by the interweaving of plant roots and often varies with the root characteristics. To better understand ground cover preferences when selecting burrow entrances by plateau pikas, we investigated the ratios of different ground covers at the rear of the entrances, as well as their coverage and underlying soil compaction in an undegraded alpine meadow on the Qinghai-Xizang Plateau. The results indicated a clear preference hierarchy of sedges > forbs > grass > bare soil. This distribution was aligned with the soil compaction hierarchy of the topsoil layer beneath each cover type. The sedge coverage was significantly negatively correlated with burrow density, suggesting that plateau pikas opt for sturdy entrances with a natural inclination toward energy conservation. However, there is consensus that the population density of plateau pikas often reaches its maximum on almost nonvegetated "black soil beaches." We hypothesized that the survival benefits brought about by vegetation degradation would be higher than the maintenance costs of burrow entrances.

Multiscale assessment of habitat selection and avoidance of sympatric carnivores by the endangered ocelot

Habitat selection by animals is a complex, dynamic process that can vary across spatial and temporal scales. Understanding habitat selection is a vital component of managing endangered species. Ocelots (Leopardus pardalis), a medium-sized endangered felid, overlap in their northern range with bobcats (Lynx rufus) and coyotes (Canis latrans), with all three species sharing similar space and resource use. As the potential for competition between these three carnivores is high, understanding differences in habitat use and the effect of these potential competitors on habitat selection of ocelots is essential to conservation. Our objective was to compare habitat selection between species and examine if ocelots avoided areas used by competitors at broad and fine scales. We captured and collared 8 ocelots, 13 bobcats, and 5 coyotes on the East Foundation's El Sauz Ranch and the Yturria San Francisco Ranch in South Texas, USA from 2017 to 2021. We compared 2nd (position of home range) and 3rd (use within the home range) order selection across species and examined whether ocelots avoided areas categorized as high probability of use by bobcats and coyotes across both orders of selection. We found a preference for heterogeneous landscapes by bobcats and coyotes while ocelots were strongly tied to woody cover across both orders. At the 2nd order, ocelots selected areas with higher probability of use by bobcats and showed no response to higher probability of use by coyotes, suggesting ocelots did not avoid either species. However, at the 3rd order, ocelots avoided areas used by coyotes. Ocelots selected for areas of use by bobcats at the 2nd order and 3rd order. Results suggest that at the broader scale, placement of the home range is not affected by the presence of sympatric carnivores, however, at a finer scale, ocelots are avoiding coyotes but not bobcats. Our study emphasizes the importance of woody and herbaceous cover at the broad scale and dense vegetation at the finer scale to sustain ocelots. In addition, we show differing patterns of interspecific avoidance by ocelots across species and scales.

Stochastic dynamics of social patch foraging decisions

Animals typically forage in groups. Social foraging can help animals avoid predation and decrease their uncertainty about the richness of food resources. Despite this, theoretical mechanistic models of patch foraging have overwhelmingly focused on the behavior of single foragers. In this study, we develop a mechanistic model that accounts for the behavior of individuals foraging together and departing food patches following an evidence accumulation process. Each individual's belief about patch quality is represented by a stochastically accumulating variable, which is coupled to another's belief to represent the transfer of information. We consider a cohesive group, and model information sharing by considering both intermittent pulsatile coupling (only communicate decision to leave) and continuous diffusive coupling (communicate throughout the deliberation process). Groups employing pulsatile coupling can obtain higher foraging efficiency, which depends more strongly on the coupling parameter compared to those using diffusive coupling. Conversely, groups using diffusive coupling are more robust to changes and heterogeneities in belief weighting and departure criteria. Efficiency is measured by a reward rate function that balances the amount of energy accumulated against the time spent in a patch, computed by solving an ordered first passage time problem for the patch departures of each individual. Using synthetic departure time data, we can distinguish between the two modes of communication and identify the model parameters. Our model establishes a social patch foraging framework to identify deliberative decision strategies and forms of social communication, and to allow model fitting to field data from foraging animal groups.

Basking and retreat site selection of Phymaturus palluma, a rock-dwelling lizard in the Highlands of Aconcagua

Basking and retreat sites constitute a key resource in the habitat of any ectotherm. Identifying the elements that are used and modelling the microhabitat selection of species is crucial for assessing the impact of anthropogenic disturbances at the population level and, therefore, focusing on conservation efforts. We investigated how structural attributes of the microhabitat and biotic factors influence the probability of basking and retreat sites use by Phymaturus palluma, a rock-dwelling and viviparous lizard endemic to the Central Andes of Argentina. We measured the characteristics of a series of rocks (basking sites) and shelters (retreat sites) in the study area and compared lizard resource use versus availability using resource selection analyses (RSFs). According to our best RSF model, P. palluma select high and large rocks as basking sites and prefer those near their retreat sites and far from the basking sites of their neighbours. In contrast, retreat site selection is related to the length, depth, slope, and width of the shelter. Microhabitat site selection of P. palluma is associated with behavioural improvements such as enhancing basking capacity, reducing both intraspecific competition with neighbours and predation risk.

Fine-scale habitat selection limits trade-offs between foraging and temperature in a grassland bird

Many species are frequently faced with the decision about how to balance the use of thermal refuge against access to food resources. We evaluated the habitat use of female greater prairie chickens (Tympanuchus cupido) to assess the potential for trade-offs between thermal conditions and food resources during the habitat selection process. Our objectives were to 1) compare near-ground temperatures, invertebrate availability, and vegetation characteristics at sites used by greater prairie chickens to conditions at random landscape locations in various time since fire patches and 2) assess changes in conditions at used sites throughout the day to determine if selection for resources changes relative to ambient conditions, resulting in trade-offs between foraging sites and thermal refuge. We found that greater prairie chickens primarily used patches 0–12 months postfire that had relatively high abundances and biomasses of invertebrates compared to other time since fire patches. Greater prairie chickens further modified their selection at relatively fine spatial scales within these food-rich patches to select for areas with cooler temperatures during the hottest part of the day. The use of thermal refuge did not appear to influence the access to food resources as invertebrate abundance and biomass at used sites were consistent throughout the day. Our results show that food resources and thermal cover influences habitat selection for greater prairie chickens, but there was little evidence for trade-offs during the habitat selection process. Consideration of spatial and temporal scales is critical for evaluating trade-offs in habitat selection for animals and this research provides insights into the decision-making process by prairie chickens.

Seasonal habitat suitability models for a threatened species: the Gunnison sage-grouse

Abstract ContextThe Gunnison sage-grouse (Centrocercus minimus) has experienced range-wide declines and has been listed as Threatened by the USA Fish and Wildlife Service to receive protections under the USA Endangered Species Act. A draft Recovery Plan was recently completed. No seasonal habitat models have been developed for the small isolated populations. AimsTo develop a habitat suitability model that was collaboratively developed between modellers and conservation practitioners to predict the probability of use by Gunnison sage-grouse during the breeding and summer seasons in designated occupied critical habitat, and extrapolate to adjacent designated unoccupied critical habitat. MethodsWe captured, marked and tracked Gunnison sage-grouse in nine different studies spanning 25 years. We used a suite of biotic, abiotic and vegetation local-level and population-scale covariates in a use-available resource selection function to develop models that predict the probability of use by Gunnison sage-grouse. Key resultsWe used 9140 Gunnison sage-grouse locations from 406 individual birds to develop nine resource selection models for occupied habitat and extrapolated model predictions to adjacent unoccupied critical habitat in five small isolated Gunnison sage-grouse populations. A majority of our models validated well. ConclusionsWe report the first two-season resource use-based habitat suitability models for five of six small isolated Gunnison sage-grouse populations. Because of the unique habitat use by Gunnison sage-grouse in each population, we recommend that resource managers strategically target management actions in individual populations and avoid ‘one-size-fits-all’ habitat management prescriptions. ImplicationsOur models will assist managers in the identification of seasonal habitats within populations to target management actions for Gunnison sage-grouse recovery.

Ideal conditions for increased trapping success of pygmy rabbits (Brachylagus idahoensis) across the Great Basin

Sagebrush-steppe ecosystems are one of the most imperiled ecosystems in North America and many of the species that rely on these habitats are of great conservation concern. Pygmy rabbits (Brachylagus idahoensis) are one of these species. They rely on sagebrush year-round for food and cover, and are understudied across their range in the intermountain west due in part to their recalcitrance to standard capture techniques. Identifying an efficient and minimally biased trapping method therefore is a critical first step in learning more about this species. We assessed how trap orientation and weather characteristics influenced trap success for Tomahawk traps placed in and around pygmy rabbit burrows by carrying out trapping surveys at 16 occupied pygmy rabbit sites across the Great Basin from 2016 to 2018. We found that pygmy rabbits had a greater probability of being captured in traps with the open end facing away from burrow entrances. Pygmy rabbits also were more likely to be captured on clear days (0–5% cloud cover) and during periods of cooler temperatures during summer months (June–August). We found no evidence that sex or age ratios differed, or that individuals differed meaningfully, in their preference for certain trap orientations. To increase trap success for pygmy rabbits, we suggest maximizing trapping effort during summer months, at dawn, and maximizing the proportion of Tomahawk traps facing away from burrow entrances. We anticipate that our monitoring protocol will enable more effective research into the ecology and conservation of this cryptic and potentially imperiled species.

The effects of microhabitat specialization on mating communication in a wolf spider

Animal signals experience selection for detectability, which is determined in large part by the signal transmission properties of the habitat. Understanding the ecological context in which communication takes place is therefore critical to understanding selection on the form of communication signals. In order to determine the influence of environmental heterogeneity on signal transmission, we focus on a wolf spider species native to central Florida, Schizocosa floridana, in which males court females using a substrate-borne vibratory song. We test the hypothesis that S. floridana is a substrate specialist by 1) assessing substrate use by females and males in the field, 2) quantifying substrate-specific vibratory signal transmission in the laboratory, and 3) determining substrate-specific mating success in the laboratory. We predict a priori that 1) S. floridana restricts its signaling to oak litter, 2) oak litter best transmits their vibratory signal, and 3) S. floridana mates most readily on oak litter. We find that S. floridana is almost exclusively found on oak litter, which was found to attenuate vibratory courtship signals the least. Spiders mated with equal frequency on oak and pine, but did not mate at all on sand. Additionally, we describe how S. floridana song contains a novel component, chirps, which attenuate more strongly than its other display components on pine and sand, but not on oak, suggesting that the ways in which the environment relaxes restrictions on signal form may be as important as the ways in which it imposes them.

Seasonal temperature acclimatization in a semi-fossorial mammal and the role of burrows as thermal refuges

Small mammals in habitats with strong seasonal variation in the thermal environment often exhibit physiological and behavioral adaptations for coping with thermal extremes and reducing thermoregulatory costs. Burrows are especially important for providing thermal refuge when above-ground temperatures require high regulatory costs (e.g., water or energy) or exceed the physiological tolerances of an organism. Our objective was to explore the role of burrows as thermal refuges for a small endotherm, the pygmy rabbit (Brachylagus idahoensis), during the summer and winter by quantifying energetic costs associated with resting above and below ground. We used indirect calorimetry to determine the relationship between energy expenditure and ambient temperature over a range of temperatures that pygmy rabbits experience in their natural habitat. We also measured the temperature of above- and below-ground rest sites used by pygmy rabbits in eastern Idaho, USA, during summer and winter and estimated the seasonal thermoregulatory costs of resting in the two microsites. Although pygmy rabbits demonstrated seasonal physiological acclimatization, the burrow was an important thermal refuge, especially in winter. Thermoregulatory costs were lower inside the burrow than in above-ground rest sites for more than 50% of the winter season. In contrast, thermal heterogeneity provided by above-ground rest sites during summer reduced the role of burrows as a thermal refuge during all but the hottest periods of the afternoon. Our findings contribute to an understanding of the ecology of small mammals in seasonal environments and demonstrate the importance of burrows as thermal refuge for pygmy rabbits.