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Lin RC, Rausher MD. Absence of long-term balancing selection on variation in EuMYB3, an R2R3-MYB gene responsible for the anther-color polymorphism in Erythronium umbilicatum. Sci Rep 2024; 14:5364. [PMID: 38438787 PMCID: PMC10912454 DOI: 10.1038/s41598-024-56117-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Accepted: 02/29/2024] [Indexed: 03/06/2024] Open
Abstract
Balancing selection has been shown to be common in plants for several different types of traits, such as self-incompatibility and heterostyly. Generally, for these traits balancing selection is generated by interactions among individuals or between individuals and other species (e.g., pathogens or pollinators). However, there are phenotypic polymorphisms in plants that do not obviously involve types of interactions that generate balancing selection. Little is known about the extent to which balancing selection also acts to preserve these polymorphisms. Here we ask whether balancing selection preserves an anther-color polymorphism in Erythronium umbilicatum (Liliaceae). We identified a major gene underlying this polymorphism. We then attempted to detect signatures of balancing selection on that gene by developing a new coalescence test for balancing selection. We found that variation in anther color is in large part caused by variation in a paralog of EuMYB3, an anthocyanin-regulating R2R3-MYB transcription factor. However, we found little evidence for balancing selection having acted historically on EuMYB3. Our results thus suggest that plant polymorphisms, especially those not involved in interactions that are likely to generate negative frequency-dependent selection, may reflect a transient state in which one morph will eventually be fixed by either genetic drift or directional selection. Our results also suggest that regulation of the anthocyanin pathway is more evolutionarily labile than is generally believed.
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Affiliation(s)
- Rong-Chien Lin
- Department of Biology, Duke University, Durham, NC, 27708, USA.
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, 06269, USA.
| | - Mark D Rausher
- Department of Biology, Duke University, Durham, NC, 27708, USA
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Lv Y, Amanullah S, Liu S, Zhang C, Liu H, Zhu Z, Zhang X, Gao P, Luan F. Comparative Transcriptome Analysis Identified Key Pathways and Genes Regulating Differentiated Stigma Color in Melon ( Cucumis melo L.). Int J Mol Sci 2022; 23:ijms23126721. [PMID: 35743161 PMCID: PMC9224399 DOI: 10.3390/ijms23126721] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 06/08/2022] [Accepted: 06/14/2022] [Indexed: 11/27/2022] Open
Abstract
Stigma color is an important morphological trait in many flowering plants. Visual observations in different field experiments have shown that a green stigma in melons is more attractive to natural pollinators than a yellow one. In the current study, we evaluated the characterization of two contrasted melon lines (MR-1 with a green stigma and M4-7 with a yellow stigma). Endogenous quantification showed that the chlorophyll and carotenoid content in the MR-1 stigmas was higher compared to the M4-7 stigmas. The primary differences in the chloroplast ultrastructure at different developmental stages depicted that the stigmas of both melon lines were mainly enriched with granum, plastoglobulus, and starch grains. Further, comparative transcriptomic analysis was performed to identify the candidate pathways and genes regulating melon stigma color during key developmental stages (S1–S3). The obtained results indicated similar biological processes involved in the three stages, but major differences were observed in light reactions and chloroplast pathways. The weighted gene co-expression network analysis (WGCNA) of differentially expressed genes (DEGs) uncovered a “black” network module (655 out of 5302 genes), mainly corresponding to light reactions, light harvesting, the chlorophyll metabolic process, and the chlorophyll biosynthetic process, and exhibited a significant contribution to stigma color. Overall, the expression of five key genes of the chlorophyll synthesis pathway—CAO (MELO03C010624), CHLH (MELO03C007233), CRD (MELO03C026802), HEMA (MELO03C011113), POR (MELO03C016714)—were checked at different stages of stigma development in both melon lines using quantitative real time polymerase chain reaction (qRT-PCR). The results exhibited that the expression of these genes gradually increased during the stigma development of the MR-1 line but decreased in the M4-7 line at S2. In addition, the expression trends in different stages were the same as RNA-seq, indicating data accuracy. To sum up, our research reveals an in-depth molecular mechanism of stigma coloration and suggests that chlorophyll and related biological activity play an important role in differentiating melon stigma color.
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Affiliation(s)
- Yuanzuo Lv
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Sikandar Amanullah
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Shi Liu
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Chen Zhang
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Hongyu Liu
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Zicheng Zhu
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
| | - Xian Zhang
- Horticulture College of Northwest A&F University, Yangling, Xianyang 712100, China;
| | - Peng Gao
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
- Correspondence: (P.G.); (F.L.)
| | - Feishi Luan
- Key Laboratory of Biology and Genetic Improvement of Horticulture Crops (Northeast Region), Ministry of Agriculture and Rural Affairs, Northeast Agricultural University, Harbin 150030, China; (Y.L.); (S.A.); (S.L.); (C.Z.); (H.L.); (Z.Z.)
- College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China
- Correspondence: (P.G.); (F.L.)
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Laitly A, Callaghan CT, Delhey K, Cornwell WK. Is color data from citizen science photographs reliable for biodiversity research? Ecol Evol 2021; 11:4071-4083. [PMID: 33976795 PMCID: PMC8093748 DOI: 10.1002/ece3.7307] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 01/09/2021] [Accepted: 01/12/2021] [Indexed: 12/31/2022] Open
Abstract
Color research continuously demands better methods and larger sample sizes. Citizen science (CS) projects are producing an ever-growing geo- and time-referenced set of photographs of organisms. These datasets have the potential to make a huge contribution to color research, but the reliability of these data need to be tested before widespread implementation.We compared the difference between color extracted from CS photographs with that of color extracted from controlled lighting conditions (i.e., the current gold standard in spectrometry) for both birds and plants. First, we tested the ability of CS photographs to quantify interspecific variability by assessing > 9,000 CS photographs of 537 Australian bird species with controlled museum spectrometry data. Second, we tested the ability of CS photographs to quantify intraspecific variability by measuring petal color data for two plant species using seven methods/sources with varying levels of control.For interspecific questions, we found that by averaging out variability through a large sample size, CS photographs capture a large proportion of across species variation in plumage color within the visual part of the spectrum (R2 = 0.68-0.71 for RGB space and 0.72-0.77 for CIE-LAB space). Between 12 and 14 photographs per species are necessary to achieve this averaging effect for interspecific studies. Unsurprisingly, the CS photographs taken with commercial cameras failed to capture information in the UV part of the spectrum. For intraspecific questions, decreasing levels of control increase the color variation but averaging larger sample sizes can partially mitigate this, aside from particular issues related to saturation and irregularities in light capture.CS photographs offer a very large sample size across space and time which offers statistical power for many color research questions. This study shows that CS photographs contain data that lines up closely with controlled measurements within the visual spectrum if the sample size is large enough, highlighting the potential of CS photographs for both interspecific and intraspecific ecological or biological questions. With regard to analyzing color in CS photographs, we suggest, as a starting point, to measure multiple random points within the ROI of each photograph for both patterned and unpatterned patches and approach the recommended sample size of 12-14 photographs per species for interspecific studies. Overall, this study provides groundwork in analyzing the reliability of a novel method, which can propel the field of studying color forward.
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Affiliation(s)
- Alexandra Laitly
- Evolution and Ecology Research CentreSchool of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNSWAustralia
| | - Corey T. Callaghan
- Evolution and Ecology Research CentreSchool of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNSWAustralia
| | - Kaspar Delhey
- Max Planck Institute for OrnithologySeewiesenGermany
- School of Biological SciencesMonash UniversityClaytonVic.Australia
| | - William K. Cornwell
- Evolution and Ecology Research CentreSchool of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNSWAustralia
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Koski MH. The role of sensory drive in floral evolution. THE NEW PHYTOLOGIST 2020; 227:1012-1024. [PMID: 32112572 DOI: 10.1111/nph.16510] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 02/17/2020] [Indexed: 05/25/2023]
Abstract
Sensory drive theory posits that the evolution of communication signals is shaped by the sensory systems of receivers and the habitat conditions under which signals are received. It has inspired an enormous body of research, advancing our understanding of signal evolution and speciation in animals. In plants, the extreme diversification of floral signals has fascinated biologists for over a century. While processes involved in sensory drive probably play out in plant-pollinator communication, the theory has not been formally synthesized in this context. However, it has untapped potential to explain mechanisms underlying variation in pollinator preferences across populations, and how environmental conditions impact floral signal transmission and perception. Here I develop a framework of sensory drive for plant-pollinator interactions, identifying similarities and differences from its original conception. I then summarize studies that shed light on how the primary processes of sensory drive - habitat transmission, perceptual tuning, and signal matching - apply to the evolution of floral color and scent. Throughout, I propose research avenues and approaches to assess how sensory drive shapes floral diversity. This framework will be important for explaining patterns of extant floral diversity and examining how altered signaling conditions under global change will impact the evolutionary trajectory of floral traits.
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Affiliation(s)
- Matthew H Koski
- Department of Biological Sciences, Clemson University, Clemson, SC, 29631, USA
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Koski MH, Berardi AE, Galloway LF. Pollen colour morphs take different paths to fitness. J Evol Biol 2020; 33:388-400. [PMID: 32012387 DOI: 10.1111/jeb.13599] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2019] [Revised: 12/04/2019] [Accepted: 01/24/2020] [Indexed: 01/23/2023]
Abstract
Colour phenotypes are often involved in communication and are thus under selection by species interactions. However, selection may also act on colour through correlated traits or alternative functions of biochemical pigments. Such forms of selection are instrumental in maintaining petal colour diversity in plants. Pollen colour also varies markedly, but the maintenance of this variation is little understood. In Campanula americana, pollen ranges from white to dark purple, with darker morphs garnering more pollinator visits and exhibiting elevated pollen performance under heat stress. Here, we generate an F2 population segregating for pollen colour and measure correlations with floral traits, pollen attributes and plant-level traits related to fitness. We determine the pigment biochemistry of colour variants and evaluate maternal and paternal fitness of light and dark morphs by crossing within and between morphs. Pollen colour was largely uncorrelated with floral traits (petal colour, size, nectar traits) suggesting it can evolve independently. Darker pollen grains were larger and had higher anthocyanin content (cyanidin and peonidin) which may explain why they outperform light pollen under heat stress. Overall, pollen-related fitness metrics were greater for dark pollen, and dark pollen sires generated seeds with higher germination potential. Conversely, light pollen plants produce 61% more flowers than dark, and 18% more seeds per fruit, suggesting a seed production advantage. Results indicate that light and dark morphs may achieve fitness through different means-dark morphs appear to have a pollen advantage whereas light morphs have an ovule advantage-helping to explain the maintenance of pollen colour variation.
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Affiliation(s)
- Matthew H Koski
- Department of Biological Sciences, Clemson University, Clemson, SC, USA.,Department of Biology, University of Virginia, Charlottesville, VA, USA
| | - Andrea E Berardi
- Institute of Plant Sciences, University of Bern, Bern, Switzerland
| | - Laura F Galloway
- Department of Biology, University of Virginia, Charlottesville, VA, USA
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Xiong YZ, Jia LB, Zhang C, Huang SQ. Color-matching between pollen and corolla: hiding pollen via visual crypsis? THE NEW PHYTOLOGIST 2019; 224:1142-1150. [PMID: 31225909 DOI: 10.1111/nph.16012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Accepted: 06/14/2019] [Indexed: 06/09/2023]
Abstract
Visual signals attractive to friends may also attract enemies. The bright colors of anthers and pollen have generally been thought to attract pollinators. We hypothesize that visual crypsis of anthers, and particularly pollen, should be favored in flowering plants because protection from pollen collectors reduces the loss of male gametes. To understand adaptive strategies relating to the color of pollen, we measured the color of pollen, undehisced anther sacs, and their background, the corolla, with a spectrometer for 104 insect-pollinated flowering species from a natural community in Hengduan Mountains, southwest China. The colors of anthers, pollen and corollas were diverse in these species. The color diversity of exposed pollen was significantly higher than that of concealed pollen (i.e. where anthers are enclosed or shielded by corollas). The color contrast between pollen and corolla was significantly smaller in species with exposed pollen than in those with concealed pollen. Unlike anther color, exposed pollen color tended to match its background corolla color. Our phylogenetic comparative analysis showed contrasting effects of pollen color patterns between flowers with exposed pollen and those with concealed pollen, revealing a strategy of hiding pollen from pollen thieves via visual crypsis.
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Affiliation(s)
- Ying-Ze Xiong
- Institute of Evolution and Ecology, School of Life Sciences, Central China Normal University, Wuhan, New England Biolabs, 430079, China
| | - Li-Bing Jia
- Institute of Evolution and Ecology, School of Life Sciences, Central China Normal University, Wuhan, New England Biolabs, 430079, China
| | - Chuan Zhang
- Institute of Evolution and Ecology, School of Life Sciences, Central China Normal University, Wuhan, New England Biolabs, 430079, China
| | - Shuang-Quan Huang
- Institute of Evolution and Ecology, School of Life Sciences, Central China Normal University, Wuhan, New England Biolabs, 430079, China
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Ison JL, Tuan ESL, Koski MH, Whalen JS, Galloway LF. The role of pollinator preference in the maintenance of pollen colour variation. ANNALS OF BOTANY 2019; 123:951-960. [PMID: 30566588 PMCID: PMC6589511 DOI: 10.1093/aob/mcy211] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Accepted: 11/12/2018] [Indexed: 05/26/2023]
Abstract
BACKGROUND AND AIMS Pollinators often drive the evolution of floral traits, but their capacity to influence the evolution of pollen colour remains unclear. Pollen colour in Campanula americana is variable and displays a longitudinal cline from prevalence of deep purple in western populations to white and light-purple pollen in eastern populations. While selection for thermal tolerance probably underlies darker pollen in the west, factors contributing to the predominance of light pollen in eastern populations and the maintenance of colour variation within populations throughout the range are unknown. Here we examine whether pollinators contribute to the maintenance of pollen colour variation in C. americana. METHODS In a flight cage experiment, we assessed whether Bombus impatiens foragers can use pollen colour as a reward cue. We then established floral arrays that varied in the frequency of white- and purple-pollen plants in two naturally occurring eastern populations. We observed foraging patterns of wild bees, totalling >1100 individual visits. KEY RESULTS We successfully trained B. impatiens to prefer one pollen colour morph. In natural populations, the specialist pollinator, Megachile campanulae, displayed a strong and consistent preference for purple-pollen plants regardless of morph frequency. Megachile also exhibited a bias toward pollen-bearing male-phase flowers, and this bias was more pronounced for purple pollen. The other main pollinators, Bombus spp. and small bees, did not display pollen colour preference. CONCLUSIONS Previous research found that Megachile removes twice as much pollen per visit as other bees and can deplete pollen from natural populations. Taken together, these results suggest that Megachile could reduce the reproductive success of plants with purple pollen, resulting in the prevalence of light-coloured pollen in eastern populations of C. americana. Our research demonstrates that pollinator preferences may play a role in the maintenance of pollen colour variation in natural populations.
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Affiliation(s)
- Jennifer L Ison
- The College of Wooster, Department of Biology, Wooster, OH, USA
| | | | - Matthew H Koski
- University of Virginia, Department of Biology, Charlottesville, VA, USA
| | - Jack S Whalen
- The College of Wooster, Department of Biology, Wooster, OH, USA
| | - Laura F Galloway
- University of Virginia, Department of Biology, Charlottesville, VA, USA
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