1
|
Hartman JD, Capistran D. Predicting 51V nuclear magnetic resonance observables in molecular crystals. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2024; 62:416-428. [PMID: 38114304 DOI: 10.1002/mrc.5420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 11/26/2023] [Accepted: 11/28/2023] [Indexed: 12/21/2023]
Abstract
Solid-state nuclear magnetic resonance (NMR) spectroscopy and quantum chemical density functional theory (DFT) calculations are widely used to characterize vanadium centers in biological and pharmaceutically relevant compounds. Several techniques have been recently developed to improve the accuracy of predicted NMR parameters obtained from DFT. Fragment-based and planewave-corrected methods employing hybrid density functionals are particularly effective tools for solid-state applications. A recent benchmark study involving molecular crystal compounds found that fragment-based NMR calculations using hybrid density functionals improve the accuracy of predicted 51V chemical shieldings by 20% relative to traditional planewave methods. This work extends the previous study, including a careful analysis of 51V chemical shift anisotropy, electric field gradient calculations, and a more extensive test set. The accuracy of planewave-corrected techniques and recently developed fragment-based methods using electrostatic embedding based on the polarized continuum model (PCM) are found to be highly competitive with previous methods. Planewave-corrected methods achieve a 34% improvement in the errors of predicted 51V chemical shieldings relative to planewave. Additionally, planewave-corrected and fragment-based calculations were performed using PCM embedding, improving the accuracy of predicted 51V chemical shielding (CS) tensor principal values by 30% andC q values by 15% relative to traditional planewave methods. The performance of these methods is further examined using a redox-active oxovandium complex and a common 51V NMR reference compound.
Collapse
Affiliation(s)
- Joshua D Hartman
- Department of Chemistry, University of California, Riverside, Riverside, California, USA
| | - Daniel Capistran
- Department of Chemistry, University of California, Riverside, Riverside, California, USA
| |
Collapse
|
2
|
Mathews A, Hartman JD. Accurate fragment-based 51-V chemical shift predictions in molecular crystals. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2021; 114:101733. [PMID: 34082261 DOI: 10.1016/j.ssnmr.2021.101733] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Revised: 04/28/2021] [Accepted: 04/28/2021] [Indexed: 06/12/2023]
Abstract
Nuclear magnetic resonance (NMR) spectroscopy plays a crucial role in determining molecular structure for complex biological and pharmaceutical compounds. NMR investigations are increasingly reliant on computation for mapping spectral features to chemical structures. Here we benchmark the accuracy of fragment-based 51V chemical shielding tensor calculations using a training set comprised of 10 biologically and pharmaceutically relevant oxovanadium complexes. Using our self-consistent reproduction of the Madelung potential (SCRMP) electrostatic embedding model, we demonstrate comparable performance between fragment methods and computationally demanding cluster-based techniques. Specifically, fragment methods employing hybrid density functionals are capable of reproducing the experimental 51V isotropic chemical shifts with a training set rms error of ~9 ppm, representing a 20% improvement over traditional plane wave techniques. We provide training set-derived linear regression models for mapping the absolute shieldings obtained from computation to the experimentally determined chemical shifts using four common density functionals; PBE0, B3LYP, PBE, and BLYP. Finally, we establish the utility of fragment methods and the reported regression parameters examining four oxovanadium structures excluded from the training set including the tetracoordinate oxovanadium silicate [Formula: see text] , VO15NGlySalbz which contains redox-active ligands, and the solid-state form of the common 51V NMR reference compound VOCl3.
Collapse
Affiliation(s)
- Amanda Mathews
- Department of Chemistry, Mt. San Jacinto College, Menifee, CA, USA
| | - Joshua D Hartman
- Department of Chemistry, Mt. San Jacinto College, Menifee, CA, USA.
| |
Collapse
|
3
|
Gupta R, Yehl J, Li M, Polenova T. 51V magic angle spinning NMR spectroscopy and quantum chemical calculations in vanadium bio-inorganic systems: current perspective. CAN J CHEM 2015. [DOI: 10.1139/cjc-2014-0557] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In recent years, 51V magic angle spinning (MAS) NMR spectroscopy has been widely used to characterize vanadium centers in biology, biomimetic complexes, and inorganic compounds of medicinal and industrial relevance. It has been demonstrated that 51V NMR parameters are sensitive probes of the coordination geometry and chemical environment of the metal center, beyond the first coordination sphere. To establish the relationships between NMR parameters and structure of the vanadium centers, over the past decade a large series of coordination complexes have been analyzed by MAS NMR spectroscopy. It has been demonstrated that the interpretation of the NMR parameters requires the use of theoretical methods, such as density functional (DFT) theory, whereby the experimental NMR observables are linked to the electronic and structural properties of a molecule. DFT calculations have been successfully employed to not only predict NMR parameters but to also yield valuable information regarding the structure and function of various vanadium compounds. In this report, we review the current state of the field, and present a survey of bioinorganic vanadium complexes as well as vanadium-dependent haloperoxidases analyzed using 51V MAS NMR spectroscopy and DFT calculations, to illustrate the rich information content available from such a combined approach.
Collapse
Affiliation(s)
- Rupal Gupta
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
| | - Jenna Yehl
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
| | - Mingyue Li
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
| | - Tatyana Polenova
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA
| |
Collapse
|
4
|
Pourpoint F, Yehl J, Li M, Gupta R, Trébosc J, Lafon O, Amoureux JP, Polenova T. NMR Crystallography of an Oxovanadium(V) Complex by an Approach Combining Multinuclear Magic Angle Spinning NMR, DFT, and Spin Dynamics Simulations. Chemphyschem 2015; 16:1619-26. [DOI: 10.1002/cphc.201500033] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2015] [Indexed: 11/08/2022]
|
5
|
Li M, Yehl J, Hou G, Chatterjee PB, Goldbourt A, Crans DC, Polenova T. NMR Crystallography for Structural Characterization of Oxovanadium(V) Complexes: Deriving Coordination Geometry and Detecting Weakly Coordinated Ligands at Atomic Resolution in the Solid State. Inorg Chem 2015; 54:1363-74. [DOI: 10.1021/ic5022388] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mingyue Li
- Department
of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Jenna Yehl
- Department
of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Guangjin Hou
- Department
of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| | - Pabitra B. Chatterjee
- Department
of Chemistry, Colorado State University, Fort Collins, Colorado 80523-1872, United States
| | - Amir Goldbourt
- School
of Chemistry, Tel Aviv University, Ramat Aviv 69978, Tel Aviv, Israel
| | - Debbie C. Crans
- Department
of Chemistry, Colorado State University, Fort Collins, Colorado 80523-1872, United States
| | - Tatyana Polenova
- Department
of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States
| |
Collapse
|
6
|
Ha Y, Murale DP, Yun C, Manjare ST, Kim H, Kwak J, Lee YS, Churchill DG. H+-Assisted fluorescent differentiation of Cu+ and Cu2+: effect of Al3+-induced acidity on chemical sensing and generation of two novel and independent logic gating pathways. Chem Commun (Camb) 2015; 51:6357-60. [DOI: 10.1039/c4cc10025e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel logic gate containing protecting groups interacts with various species (acetonitrile) with fluorescence responses relating to ligand non innocence.
Collapse
Affiliation(s)
- Yonghwang Ha
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| | - Dhiraj P. Murale
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| | - Changsuk Yun
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| | - Sudesh T. Manjare
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations
| | - Hyungjun Kim
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| | - Juhyoun Kwak
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| | - Yoon Sup Lee
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| | - David G. Churchill
- Department of Chemistry
- Korea Advanced Institute of Science and Technology (KAIST)
- Daejeon
- Republic of Korea
| |
Collapse
|
7
|
Drouza C, Vlasiou M, Keramidas AD. Synthesis, characterization of dinuclear vanadium(III) hydroquinonate–iminodiacetate complexes. Inorganica Chim Acta 2014. [DOI: 10.1016/j.ica.2013.12.033] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
8
|
Goncharova-Zapata O, Chatterjee PB, Hou G, Quinn LL, Li M, Yehl J, Crans DC, Polenova T. Effect of Ancillary Ligand on Electronic Structure as Probed by 51V Solid-State NMR Spectroscopy for Vanadium- o-Dioxolene Complexes. CrystEngComm 2013; 15. [PMID: 24353476 DOI: 10.1039/c3ce41322e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A series of vanadium(V) complexes with o-dioxolene (catecholato) ligands and an ancillary ligand, (N-(salicylideneaminato)ethylenediamine) (hensal), were investigated using 51V solid-state magic angle spinning NMR spectroscopy (51V MAS NMR) to assess the local environment of the vanadium(V). The solid-state 51V NMR parameters of vanadium(V) complexes with a related potentially tetradentate ancillary ligand (N-salicylidene-N'-(2-hydroxyethyl)ethylenediamine) (h2shed) were previously shown to be associated with the size of the HOMO-LUMO gap in the complex, and as such provide insights on the interaction between metal ion and ligand (P. B. Chatterjee, et al., Inorg. Chem 50 (2011) 9794). Our results show that the modification of the ancillary ligand does not impact the observed trend between complexes ranging from catechols with electron rich to electron poor substituents. However, the ancillary ligand does impact the size of the HOMO-LUMO separation in the parent complex and thus the solid-state vanadium NMR chemical shift of the unsubstituted vanadium complex. For these complexes significant changes observed in the isotropic shifts and more modest changes detected in the CQ reflect the electronic changes in the complex as the catechol is varied. However, no obvious trend was observed in the chemical shift anisotropies (δσ and ησ) with the variation in the catechol. The electronic changes in the coordination environment of the vanadium can be described using solid-state 51V NMR spectroscopy.
Collapse
Affiliation(s)
- Olga Goncharova-Zapata
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| | - Pabitra B Chatterjee
- Department of Chemistry, Colorado State University, Fort Collins, CO 80523-1872, USA. Tel. +1-970-491-7635
| | - Guangjin Hou
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| | - Laurence L Quinn
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| | - Mingyue Li
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| | - Jenna Yehl
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| | - Debbie C Crans
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| | - Tatyana Polenova
- Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA. ; Tel. +1-302-831-1968
| |
Collapse
|