The Copper(II)-Thiodiacetate (tda) Chelate as Efficient Receptor of N9-(2-Hydroxyethyl)Adenine (9heade): Synthesis, Molecular and Crystal Structures, Physical Properties and DFT Calculations of [Cu(tda)(9heade)(H2O)]·2H2O

Considering that Cu(tda) chelate (tda: dithioacetate) is a receptor for adenine and related 6-aminopurines, this study reports on the synthesis, molecular and crystal structures, thermal stability, spectral properties and DFT calculations related to [Cu(tda)(9heade)(H2O)]·2H2O (1) [9heade: N9-(2-hydroxyethyl)adenine]. Concerning the molecular recognition of (metal chelate)-(adenine synthetic nucleoside), 1 represents an unprecedented metal binding pattern (MBP) for 9heade. However, unprecedentedly, the Cu(tda)-9heade molecular recognition in 1 is essentially featured in the Cu-N1(9heade) bond, without any N6-H⋯O(carboxyl tda) interligand interaction. Nevertheless, N1 being the most basic donor for N9-substituted adenines, this Cu-N1 bond is now assisted by an O2-water-mediated interaction (N6-H⋯O2 and O2⋯Cu weak contact). Also, in the crystal packing, the O-H(ol) of 9heade interacts with its own adenine moiety as a result of an O3-water-mediated interaction (O(ol)-H⋯O3 plus O3-H36⋯π(adenine moiety)). Both water-mediated interactions seem to be responsible for serious alterations in the physical properties of crystalline or grounded samples. Density functional theory calculations were used to evaluate the interactions energetically. Moreover, the quantum theory of atoms-in-molecules (QTAIM), in combination with the noncovalent interaction plot (NCIPlot), was used to analyze the interactions and rationalize the existence and relative importance of hydrogen bonding, chalcogen bonding and π-stacking interactions. The novelty of this work resides in the discovery of a novel binding mode for N9-(2-hydroxyethyl)adenine. Moreover, the investigation of the important role of water in the solid state of 1 is also relevant, along with the chalcogen bonding interactions demonstrated by the density functional theory (DFT) study.

Blue-Emitting Ligand-Mediated Assembly of Rare-Earth MOFs toward White-Light Emission, Sensing, Magnetic, and Catalytic Studies

New lanthanide carboxylate compounds with two- (2D) and three-dimensional (3D) structures have been prepared by employing 2,5-bis(prop-2-yn-1-yloxy)terephthalic acid (2,5-BPTA) as an organic linker. The compounds, [Ln(C₁₄H₈O₆)(C₇O₃H₄)·2H₂O]·4(H₂O), Ln = Y, Pr, Nd, Sm, Eu, Gd, Tb, Dy and [Ln(C₇O₃H₄)₃·(C₃H₇ON)·(H₂O)]·2(H₂O)(C₃H₇NO), Ln = La, Ce, Pr, have two- and three-dimensional structures, respectively. In all compounds, lanthanide ions are connected together, forming a dimer, which is connected by the 2,5-BPTA ligand. In the two-dimensional structure, there are two 2,5-BPTA moieties present, and in the three-dimensional structure, there are three 2,5-BPTA moieties present. The lanthanide centers are nine-coordinated, the 2D structure has a tricapped trigonal prismatic arrangement, and the 3D structure has a monocapped distorted square antiprismatic arrangement. The Pr compound forms in both 2D and 3D structures, whose formation depends on the time of the reaction (2 days─2D and 5-6 days─3D). The ligand emits in the blue region, and using the characteristic emission of Eu³⁺ (red) and Tb³⁺ (green) ions, we achieve white light emission in the (Y_0.96Tb_0.02Eu_0.02) compound. The overall quantum yield for the white light emission is 28%. The strong green luminescence of the Tb³⁺-containing compound was employed to selectively sense the Cr³⁺ and Fe³⁺ ions in aqueous solution with limits of detection (LODs) at 0.41 and 8.6 ppm, respectively. The Tb compound was found to be a good heterogeneous catalyst for the Ullman-type O-arylation reaction between phenol and bromoarene with yields of 95%. Magnetic studies on the Gd-, Tb-, and Dy-containing compounds showed weak exchange interactions within the dimeric Ln₂ units. The present work demonstrates the many utilities of the rare-earth-containing MOFs, especially toward white-light emission, metal-ion sensing, and heterogeneous catalysis.

Recent advances in structures and applications of coordination polymers based on cyclohexanepolycarboxylate ligands

Coordination polymers (CPs) are emerging crystalline materials constructed by metal entities and organic ligands through coordination bonds, containing infinite coordination units in one, two, or three dimensions. Here an overview...

Dicopper(II)-EDTA Chelate as a Bicephalic Receptor Model for a Synthetic Adenine Nucleoside

In the extensive field of metal ions, their interactions with nucleic acids, and their constituents, the main aim of this work is to develop a metal chelate suitable to recognize two molecules of an adenine nucleoside. For this purpose, the dinuclear chelate Cu₂ (µ-EDTA) (ethylenediaminetetraacetate(4-) ion (EDTA)) is chosen as a bicephalic receptor model for N9-(2-hydroxyethyl)adenine (9heade). A one-pot synthesis is reported to obtain the compound [Cu₂(µ₂-EDTA)(9heade)₂(H₂O)₄]·3H₂O, which has been characterized by single-crystal X-ray diffraction and various spectral, thermal, and magnetic methods. The complex unit is a centro-symmetric molecule, where each Cu (II) center is chelated by a half-EDTA, and is further surrounded by an N7-dentate 9heade nucleoside and two non-equivalent trans-O-aqua molecules. The metal chelate-nucleoside molecular recognition is referred to as an efficient cooperation between the Cu-N7(9heade) coordination bond and a (9heade)N6-H···O(carboxyl, EDTA) interligand interaction. Theoretical calculations are also made to account for the relevance of this interaction. The extreme weakness with which each water molecule binds to the metal center disturbs the thermal stability and the infrared (FT-IR) and electron spin resonance (ESR) spectra of the compound.

Assembly of {Co14} nanoclusters from adenine-modified Co4-thiacalix[4]arene units

An adenine-modified Co₄-thiacalix[4]arene unit can serve as a second building unit for fabrication of three Co₁₄ clusters with different structures.

Tunable photoluminescence in flexible carboxylate ligand-based coordination polymers with interesting topologies and Fe3+ sensitivity

Complexes 1–5, showing different interesting topological networks from 1D ladder to 3D frameworks, exhibit selective and sensitive fluorescence quenching of Fe³⁺ ion.

Molecular and supramolecular recognition patterns in ternary copper(II) or zinc(II) complexes with selected rigid-planar chelators and a synthetic adenine-nucleoside

Four ternary metal-complexes with Cu(II) or Zn(II), 2,6-pyridine-dicarboxylate (pdc) or glycyl-glycinate (GG) and the synthetic nucleoside 9-(2-hydroxyethyl)adenine (9heade) have been synthesized and studied by single-crystal X-ray diffraction and other physical methods. Relevant supramolecular assemblies found in the solid state structures have been further studied using density functional theory (DFT) calculations. In addition, the energetic features of the non-covalent interactions as well as the cooperativity effects have been calculated and characterized using the non-covalent interaction plot computational tool. Compounds trans-[Cu(pdc)(9heade)(H₂O)₂]·3H₂O (1a) and [Cu(pdc)(9heade)(H₂O)]·H₂O (1b), trans-[Zn(pdc)(9heade)(H₂O)₂] (2), share the same molecular recognition pattern consisting in the cooperation of the metal-N7(9heade) bond and an interligand (9heade)N6-H···O(pdc) interaction, regardless of the nature of the metal, the coordination environment and the water content. At a supramolecular level, these compounds exhibit pairs of complex molecules linked by H-bonds and interesting anion-π/π-π/π-anion assemblies (in 1a and 1b) or the unprecedented π-π interactions (in 2), involving the purine moieties or the exocyclic -⁶NH₂ purine groups, respectively. Compound 3, {[Cu(GG)(9heade)(H₂O)·Cu(GG)(μ₂-9heade)]·8H₂O}_n, consists in asymmetric dinuclear complex units (Cu···Cu 7.83 Å) that connect with adjacent ones by pairs of very weak Cu-O(carboxylate) bonds (Cu···Cu 3.81 Å) building a polymeric chain. The supramolecular transition from a single molecule to dinuclear units and finally a polymeric chain is also observed in the electron paramagnetic resonance spectra and discussed from a structural point of view as well as by DFT calculations. The unprecedented N7 and μ-N7,O(ol) metal binding patterns of 9heade differs from that recently reported (μ-N1,N7) in a Cd(II) polymer.

7-Methyl-6-furylpurine forms dinuclear metal complexes with N3,N9 coordination

Two dinuclear metal complexes bearing the purine derivative 7-methyl-6-furylpurine (1b) as a ligand are reported. In [Ag2(1b)2(DMSO)2](ClO4)2·DMSO and [Cu2(1b)2(NO3)2], two bridging purine derivatives coordinate the two metal ions via their N3 and N9 positions. In the silver(I) complex, the coordination environment of each metal ion is completed by a DMSO ligand, whereas an additional nitrato ligand coordinates to each copper(I) ion. The intramolecular Ag···Ag distance of 3.1069(5) Å is in agreement with the presence of a weak argentophilic interaction, whereas the Cu···Cu distance of 2.9382(4) Å is too long to be indicative of a cuprophilic interaction. The compounds represent the first examples of dinuclear complexes comprising two N3,N9-bridging purine derivatives without any additional bridging ligand.

A highly emissive and stable zinc(ii) metal–organic framework as a host–guest chemopalette for approaching white-light-emission

A new adenine-containing metal–organic framework (MOF), [Zn₄O(adenine)₄(benzene-1,3-dicarboxylate)₄Zn₂] (named as ZnBDCA), was synthesized solvothermally.