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Musina E, Wittmann T, Latypov S, Kondrashova S, Lönnecke P, Litvinov I, Hey‐Hawkins E, Karasik A. Self‐Assembly of Chiral 1,8‐Diaza‐3,6,10,13‐tetraphosphacyclotetradecanes via Dynamic Transformation of 7‐ and 14‐Membered Aminomethylphosphines. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201900386] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Elvira Musina
- A. E. Arbuzov Institute of Organic and Physical Chemistry Kazan Scientific Center Russian Academy of Sciences Arbuzov, 8 420088 Kazan Russia
| | - Tatiana Wittmann
- A. E. Arbuzov Institute of Organic and Physical Chemistry Kazan Scientific Center Russian Academy of Sciences Arbuzov, 8 420088 Kazan Russia
| | - Shamil Latypov
- A. E. Arbuzov Institute of Organic and Physical Chemistry Kazan Scientific Center Russian Academy of Sciences Arbuzov, 8 420088 Kazan Russia
| | - Svetlana Kondrashova
- A. E. Arbuzov Institute of Organic and Physical Chemistry Kazan Scientific Center Russian Academy of Sciences Arbuzov, 8 420088 Kazan Russia
| | - Peter Lönnecke
- Faculty of Chemistry and Mineralogy Institute of Inorganic Chemistry Leipzig University Leipzig Germany
| | - Igor Litvinov
- A. E. Arbuzov Institute of Organic and Physical Chemistry Kazan Scientific Center Russian Academy of Sciences Arbuzov, 8 420088 Kazan Russia
| | - Evamarie Hey‐Hawkins
- Faculty of Chemistry and Mineralogy Institute of Inorganic Chemistry Leipzig University Leipzig Germany
| | - Andrey Karasik
- A. E. Arbuzov Institute of Organic and Physical Chemistry Kazan Scientific Center Russian Academy of Sciences Arbuzov, 8 420088 Kazan Russia
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Cysteine proteases as therapeutic targets: does selectivity matter? A systematic review of calpain and cathepsin inhibitors. Acta Pharm Sin B 2015; 5:506-19. [PMID: 26713267 PMCID: PMC4675809 DOI: 10.1016/j.apsb.2015.08.001] [Citation(s) in RCA: 165] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Revised: 07/09/2015] [Accepted: 07/14/2015] [Indexed: 01/17/2023] Open
Abstract
Cysteine proteases continue to provide validated targets for treatment of human diseases. In neurodegenerative disorders, multiple cysteine proteases provide targets for enzyme inhibitors, notably caspases, calpains, and cathepsins. The reactive, active-site cysteine provides specificity for many inhibitor designs over other families of proteases, such as aspartate and serine; however, a) inhibitor strategies often use covalent enzyme modification, and b) obtaining selectivity within families of cysteine proteases and their isozymes is problematic. This review provides a general update on strategies for cysteine protease inhibitor design and a focus on cathepsin B and calpain 1 as drug targets for neurodegenerative disorders; the latter focus providing an interesting query for the contemporary assumptions that irreversible, covalent protein modification and low selectivity are anathema to therapeutic safety and efficacy.
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Key Words
- AD, Alzheimer׳s disease
- ALS, amyotrophic lateral sclerosis
- APP, amyloid precursor protein
- APP/PS1, Aβ overexpressing mice APP (K670N/M671L) and PS1 (M146L) mutants
- Ala, alanine
- Alzheimer׳s disease
- AppLon, London familial amyloid precursor protein mutation, APP (V717I)
- AppSwe, Swedish amyloid precursor protein mutation, APP (K670N/M671L)
- Arg, arginine
- Aβ, amyloid β
- Aβ1-42, amyloid β, 42 amino acid protein
- BACE-1, β-amyloid cleaving enzyme
- BBB, blood–brain barrier
- CANP, calcium-activated neutral protease
- CNS, central nervous system
- CREB, cyclic adenosine monophosphate response element binding protein
- CaMKII, Ca2+/calmodulin-dependent protein kinases II
- Calpain
- Cathepsin
- Cdk5/p35, activator of cyclin-dependent kinase 5
- Cysteine protease
- DTT, dithioerythritol
- EGFR, epidermal growth factor receptor
- ERK1/2, extracellular signal-regulated kinase 1/2
- Enzyme inhibitors
- GSH, glutathione
- Gln, glutamine
- Glu, glutamic acid
- Gly, glutamine
- Hsp70.1, heat shock protein 70.1
- Ile, isoleucine
- KO, knockout
- Leu, leucine
- Lys, lysine
- MAP-2, microtubule-associated protein 2
- MMP-9, matrix metalloproteinase 9
- Met, methionine
- NFT, neurofibrilliary tangles
- Neurodegeneration
- Nle, norleucine
- PD, Parkinson׳s disease
- PK, pharmacokinetic
- PKC, protein kinase C
- PTP1B, protein-tyrosine phosphatase 1B
- Phe, phenylalanine
- Pro, proline
- SP, senile plaques
- TBI, traumatic brain injury
- TNF, tumor necrosis factor
- Thr, threonine
- Tyr, tyrosine
- Val, valine
- WRX, Trp-Arg containing epoxysuccinate cysteine protease inhibitor
- WT, wildtype
- isoAsp, isoaspartate
- pGlu, pyroglutamate
- pyroGluAβ, pyroglutamate-amyloid β
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Berhanu WM, Ibrahim MA, Pillai GG, Oliferenko AA, Khelashvili L, Jabeen F, Mirza B, Ansari FL, ul-Haq I, El-Feky SA, Katritzky AR. Similarity analysis, synthesis, and bioassay of antibacterial cyclic peptidomimetics. Beilstein J Org Chem 2012; 8:1146-60. [PMID: 23019443 PMCID: PMC3458733 DOI: 10.3762/bjoc.8.128] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2012] [Accepted: 06/01/2012] [Indexed: 12/04/2022] Open
Abstract
The chemical similarity of antibacterial cyclic peptides and peptidomimetics was studied in order to identify new promising cyclic scaffolds. A large descriptor space coupled with cluster analysis was employed to digitize known antibacterial structures and to gauge the potential of new peptidomimetic macrocycles, which were conveniently synthesized by acylbenzotriazole methodology. Some of the synthesized compounds were tested against an array of microorganisms and showed antibacterial activity against Bordetella bronchistepica, Micrococcus luteus, and Salmonella typhimurium.
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Affiliation(s)
- Workalemahu M Berhanu
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA
| | - Mohamed A Ibrahim
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA
- Department of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Zagazig University, Zagazig-44519, Egypt
- Department of Organic Chemistry, College of Pharmacy, Misr University for Science and Technology, Al-Motamayez District, P.O. Box: 77, Egypt
| | - Girinath G Pillai
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA
| | - Alexander A Oliferenko
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA
| | - Levan Khelashvili
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA
| | - Farukh Jabeen
- Department of Chemistry, Quaid i Azam University, Islamabad 45320, Pakistan
| | - Bushra Mirza
- Department of Biochemistry, Quaid i Azam University, Islamabad 45320, Pakistan
| | | | - Ihsan ul-Haq
- Department of Biochemistry, Quaid i Azam University, Islamabad 45320, Pakistan
| | - Said A El-Feky
- Department of Pharmaceutical Organic Chemistry, Faculty of Pharmacy, Zagazig University, Zagazig-44519, Egypt
| | - Alan R Katritzky
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611-7200, USA
- Department of Chemistry, King Abdulaziz University, Jeddah 21589, Saudi Arabia
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4
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Buckley DL, Van Molle I, Gareiss PC, Tae HS, Michel J, Noblin DJ, Jorgensen WL, Ciulli A, Crews CM. Targeting the von Hippel-Lindau E3 ubiquitin ligase using small molecules to disrupt the VHL/HIF-1α interaction. J Am Chem Soc 2012; 134:4465-8. [PMID: 22369643 PMCID: PMC3448299 DOI: 10.1021/ja209924v] [Citation(s) in RCA: 331] [Impact Index Per Article: 27.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
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E3 ubiquitin ligases, which bind protein targets, leading
to their
ubiquitination and subsequent degradation, are attractive drug targets
due to their exquisite substrate specificity. However, the development
of small-molecule inhibitors has proven extraordinarily challenging
as modulation of E3 ligase activities requires the targeting of protein–protein
interactions. Using rational design, we have generated the first small
molecule targeting the von Hippel–Lindau protein (VHL), the
substrate recognition subunit of an E3 ligase, and an important target
in cancer, chronic anemia, and ischemia. We have also obtained the
crystal structure of VHL bound to our most potent inhibitor, confirming
that the compound mimics the binding mode of the transcription factor
HIF-1α, a substrate of VHL. These results have the potential
to guide future development of improved lead compounds as therapeutics
for the treatment of chronic anemia and ischemia.
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Affiliation(s)
- Dennis L Buckley
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States
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Hydrophobic tag-assisted liquid-phase synthesis of a growth hormone-inhibiting peptide somatostatin. Bioorg Med Chem Lett 2011; 21:4476-9. [DOI: 10.1016/j.bmcl.2011.06.004] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2011] [Revised: 05/24/2011] [Accepted: 06/01/2011] [Indexed: 01/18/2023]
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Burguete MI, Clares MP, García-España E, Luis SV, Querol M, Martí-Centelles V. Azonia spiro polyaza macrocycles containing biphenyl subunits as anion and cation receptors. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.04.071] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Smith JM, Vitali F, Archer SA, Fasan R. Modular Assembly of Macrocyclic Organo-Peptide Hybrids Using Synthetic and Genetically Encoded Precursors. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201101331] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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8
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Smith JM, Vitali F, Archer SA, Fasan R. Modular assembly of macrocyclic organo-peptide hybrids using synthetic and genetically encoded precursors. Angew Chem Int Ed Engl 2011; 50:5075-80. [PMID: 21506227 DOI: 10.1002/anie.201101331] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2011] [Indexed: 02/01/2023]
Affiliation(s)
- Jessica M Smith
- Department of Chemistry, RC Box 270216, University of Rochester, Rochester, NY 14627, USA
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Donkor IO. Calpain inhibitors: a survey of compounds reported in the patent and scientific literature. Expert Opin Ther Pat 2011; 21:601-36. [DOI: 10.1517/13543776.2011.568480] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Beletskaya IP, Averin AD, Bessmertnykh AG, Denat F, Guilard R. Palladium-catalyzed amination in the synthesis of polyazamacrocycles. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2010. [DOI: 10.1134/s1070428010070018] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Pd-catalyzed amination of isomeric dibromobiphenyls: possibilities of one-step synthesis of macrocycles. MENDELEEV COMMUNICATIONS 2010. [DOI: 10.1016/j.mencom.2010.01.001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Affiliation(s)
- Albert Isidro-Llobet
- Institute for Research in Biomedicine, Barcelona Science Park, Baldiri Reixac 10, 08028 Barcelona, Spain
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Cheah WC, Black DS, Goh WK, Kumar N. Synthesis of anti-bacterial peptidomimetics derived from N-acylisatins. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.03.007] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Chicharro R, Alonso M, Arán VJ, Herradón B. Studies on calpain inhibitors. Synthesis of partially reduced isoquinoline-1-thione derivatives and conversion to functionalized 1-chloroisoquinolines. Tetrahedron Lett 2008. [DOI: 10.1016/j.tetlet.2008.02.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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